jgi.p|Nanoce1779_2|593759, mRNA_6103 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593759
Unique NamemRNA_6103
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1524
Alignment locationscaffold_14:522231..523754 -

Link to JBrowse

Properties
Property NameValue
TranscriptId593845
TrackFilteredModels2
ProteinId593759
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:522231..523754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593759gene_6103Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593759mRNA_6103-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6103CDS_6103Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6103 ID=mRNA_6103|Name=jgi.p|Nanoce1779_2|593759|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
CGATGATCAATATTATTGCTTGTTTCTTATTTTTACGATCTTGATTATTC
TCTCCTTTCTTGTTTCTCACATCGTTTTCTTGCGCCACTGTTAATTATTT
CAACTGTCGTTGTCGTTGTCGTCATCGTCTCTGTAGCAACCGTGACAGAA
GCCTCCAATTTCTACACGTCATCACACACCATCGTACATGTGCTACCGGA
CAGACATCCACACAATAAATGCCCCACCCCCTGGCTGCTGTTCGCTGTTT
TGCCGTCAATTACTCGCGCCGTGGTACCCTCGTGTCTTTTTTTAGTTGTT
CCTCGCCTCCCTCTTTCACTTCTTCTTTTTCATATGTTTAGTGTAGCTCT
TGTCCTCGGTCTTCACCTCCCACCCCACGGTATTAGAGAACAGTTGTTAT
TATTGTTTTTGTTATGGTTGTTGTGGCTGTAGTTGTCGTGGTTGATGTGG
TTGACGATGTACTATTGTTGGTGTTTTTCAGGTGCATGGTTGTCGTTCTT
CATCCTCCGAGAGCACACACCGCACACACGCAGGCTCCCTATCCACTTCC
TCTTCCCCTCTTTACCCTCCTCTGTTATTTCATCTCTACATCTTTTTTCC
CTCCATTTGTTTGTGGAGAAAGGGCAAAAGAGGCGTTCTCGAGAAGATGC
CATGAGACATACATGCTCTCCTTCGATTTGACAAATTTCTTTCTTGTGCT
CTTGCAGATCCTGATATTGGTACTGGTGCTCGGGGTGTGGTAGTGATGAT
GGGAGAGGTCTCACACATGTACCCACACATACTTAAACATGACAAAACAA
ACACTACAGTTGATATCCACCTTTTTTTCTTCCATATATATGTATGTATA
CACGGAATCCTCATTTCTCCTTACCCGCGAAAATATACCCCATTTCACAC
TTTTTTCGGGCAAATTTGTTTTACCCCTGTCATTGTTTAACAACCGACCG
CTTCCTTTTTTCTTGGACGATATACACACATAGAACGCTACGAACACAGT
CTCTCCTTCCCTTCCTCCCCCCTCAATAAGAGCCAGGAGGAGGAGCCATG
CTCGCCTGTTGCACCGTCGTCGTGATCATCCCTCGTGCCACCTCCGCACA
GTAAACAGGCCCTTCAATTGCCACGACCCTATTTTGCGTCCCCGGGGCGT
ATTCGCCTCGTTTCGAGATCGTAATTCGAGCTCCTGATTGAGACTGAAAC
TTTTTAAGAGTCGCCCCGGATTTACCCAGAATGGAGCCTATGAGTTTGTC
GGGGACTTGGAGGGTCAGGGTAGTGTTGGCGAACTGCTGGTGCTGGAGCT
GCTGCTGCAAGGCGACGAGGGAGGAATTTGAGGAGGGAGGTTGTTGTATG
TGGTGGTGGTGGACGTGTTGCGGCTGCTGGGGGTGGTGGGAGAGGGAGTT
ATGAACGTGCGCGTATCTTCCTCCTCCTTCTCCACCACCTCCTCCTCTTC
CTCTTCCTCCTCCACCCCTTCCTCCGTGAAGAGGGACAGGAGGGTGCGCA
GCGTGGGGGTGCGACTGGTGTAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|593759

>mRNA_6103-protein ID=mRNA_6103-protein|Name=jgi.p|Nanoce1779_2|593759|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MVVVAVVVVVDVVDDVLLLVFFRCMVVVLHPPRAHTAHTQAPYPLPLPLF
TLLCYFISTSFFPPFVCGERAKEAFSRRCHETYMLSFDLTNFFLVLLQIL
ILVLVLGVW*
back to top

mRNA from alignment at scaffold_14:522231..523754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6103 ID=mRNA_6103|Name=jgi.p|Nanoce1779_2|593759|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at scaffold_14:522231..523754- (Nannochloropsis oceanica)
CGATGATCAATATTATTGCTTGTTTCTTATTTTTACGATCTTGATTATTC
TCTCCTTTCTTGTTTCTCACATCGTTTTCTTGCGCCACTGTTAATTATTT
CAACTGTCGTTGTCGTTGTCGTCATCGTCTCTGTAGCAACCGTGACAGAA
GCCTCCAATTTCTACACGTCATCACACACCATCGTACATGTGCTACCGGA
CAGACATCCACACAATAAATGCCCCACCCCCTGGCTGCTGTTCGCTGTTT
TGCCGTCAATTACTCGCGCCGTGGTACCCTCGTGTCTTTTTTTAGTTGTT
CCTCGCCTCCCTCTTTCACTTCTTCTTTTTCATATGTTTAGTGTAGCTCT
TGTCCTCGGTCTTCACCTCCCACCCCACGGTATTAGAGAACAGTTGTTAT
TATTGTTTTTGTTATGGTTGTTGTGGCTGTAGTTGTCGTGGTTGATGTGG
TTGACGATGTACTATTGTTGGTGTTTTTCAGGTGCATGGTTGTCGTTCTT
CATCCTCCGAGAGCACACACCGCACACACGCAGGCTCCCTATCCACTTCC
TCTTCCCCTCTTTACCCTCCTCTGTTATTTCATCTCTACATCTTTTTTCC
CTCCATTTGTTTGTGGAGAAAGGGCAAAAGAGGCGTTCTCGAGAAGATGC
CATGAGACATACATGCTCTCCTTCGATTTGACAAATTTCTTTCTTGTGCT
CTTGCAGATCCTGATATTGGTACTGGTGCTCGGGGTGTGGTAGTGATGAT
GGGAGAGGTCTCACACATGTACCCACACATACTTAAACATGACAAAACAA
ACACTACAGTTGATATCCACCTTTTTTTCTTCCATATATATGTATGTATA
CACGGAATCCTCATTTCTCCTTACCCGCGAAAATATACCCCATTTCACAC
TTTTTTCGGGCAAATTTGTTTTACCCCTGTCATTGTTTAACAACCGACCG
CTTCCTTTTTTCTTGGACGATATACACACATAGAACGCTACGAACACAGT
CTCTCCTTCCCTTCCTCCCCCCTCAATAAGAGCCAGGAGGAGGAGCCATG
CTCGCCTGTTGCACCGTCGTCGTGATCATCCCTCGTGCCACCTCCGCACA
GTAAACAGGCCCTTCAATTGCCACGACCCTATTTTGCGTCCCCGGGGCGT
ATTCGCCTCGTTTCGAGATCGTAATTCGAGCTCCTGATTGAGACTGAAAC
TTTTTAAGAGTCGCCCCGGATTTACCCAGAATGGAGCCTATGAGTTTGTC
GGGGACTTGGAGGGTCAGGGTAGTGTTGGCGAACTGCTGGTGCTGGAGCT
GCTGCTGCAAGGCGACGAGGGAGGAATTTGAGGAGGGAGGTTGTTGTATG
TGGTGGTGGTGGACGTGTTGCGGCTGCTGGGGGTGGTGGGAGAGGGAGTT
ATGAACGTGCGCGTATCTTCCTCCTCCTTCTCCACCACCTCCTCCTCTTC
CTCTTCCTCCTCCACCCCTTCCTCCGTGAAGAGGGACAGGAGGGTGCGCA
GCGTGGGGGTGCGACTGGTGTAGG
back to top

Coding sequence (CDS) from alignment at scaffold_14:522231..523754-

>mRNA_6103 ID=mRNA_6103|Name=jgi.p|Nanoce1779_2|593759|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_14:522231..523754- (Nannochloropsis oceanica)
ATGGTTGTTGTGGCTGTAGTTGTCGTGGTTGATGTGGTTGACGATGTACT
ATTGTTGGTGTTTTTCAGGTGCATGGTTGTCGTTCTTCATCCTCCGAGAG
CACACACCGCACACACGCAGGCTCCCTATCCACTTCCTCTTCCCCTCTTT
ACCCTCCTCTGTTATTTCATCTCTACATCTTTTTTCCCTCCATTTGTTTG
TGGAGAAAGGGCAAAAGAGGCGTTCTCGAGAAGATGCCATGAGACATACA
TGCTCTCCTTCGATTTGACAAATTTCTTTCTTGTGCTCTTGCAGATCCTG
ATATTGGTACTGGTGCTCGGGGTGTGGTAG
back to top
Synonyms
Publications