jgi.p|Nanoce1779_2|593752, mRNA_6101 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593752
Unique Name	mRNA_6101
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2201
Alignment location	scaffold_14:516972..519438 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593838
Track	FilteredModels2
ProteinId	593752

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:516972..519438 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593752	gene_6101	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593752	mRNA_6101-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6101	CDS_6101	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:516972..519438+
coding sequence from alignment at scaffold_14:516972..519438+

mRNA sequence

>mRNA_6101 ID=mRNA_6101|Name=jgi.p|Nanoce1779_2|593752|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp
AACAGGTGGCGCAAAGAGCTCGCTTGTAGCAGCTAGCCGTCCTTGTTCCC
TTTCATCTGGGTCGCGACAGCCCGACATCCAACCACCAAGCCATGTCCTG
CAGTCTGTAACAATACAAACACACACCACACGTCTACCTCGCCCGCCTGC
CGATCAGCTCATACCCTCTGTCTGGCAAAAACTTCAGAAAGGTCCAACAA
CCCTCCGCACGACTTCACACAAGCAATTATGGCTTGGACCAGACCCTCCA
CCACCAGCGGCAGTATCCTCCGTCACCACCGGTGCCCGGTGCTAGCTCTG
CTACTATGCCTCTATGCGGTTGTCATCGACTCTTTCATGGTGCCTGCCCA
CACCAAGGCTTCATCAAGCCGGAGATCAAGAGTCGCTGGCGCAGCGCCCA
CCTCGCGGCTAATTCGTGGATCAACGGTGCAAGCCCGTGAGCCCAAGGTG
AGCACCAGCACCAGCACCAGCACTACTCCTACGAGCAACCCTCCTAACAC
CCCTTCCGCCGCTCAACCCCCCGTGGTCGCCCCCGTTGTTCCTCAAGAAG
CCTTGCTACCGGCATCCTTTTTCCAATCATTGCCTTGGTCTCGCTCTATC
AACGGCGATGGTGCTGAGACATTGTTGTACATGCCTTTCTTGGAGGCGCA
GATGCGACATCTCGAGGTCCATGGTGGCTTTGTCCGCGAGCTGCCGGTGC
CTGAGTCTGTCTCTTACACACGAGCTGCGAAAAAGGCGTCGCATATGGGT
AAGAAATGAGAAAGGATGAAGGGGCCGAGGGAGGAGAAATGGAAGGAAAT
AAAGAGGGCATAAAAAAGCGCACGCTTTCTTTTCCATCTGCATTTTCGAC
ACTCCCTCACCCTTCTCTCTTTCTCCCTCCCTCCCTCACTCCCTCCCTTC
GCACAGCGAGCTTCTGCGTGGAGACTGAAGACTTCAGAAAGATCCGCTTC
ACCTACATGGACGGAGGGAAGGGCCTGCAGGTTTTCAACTCTGTGTGGTA
TCCGCGCTTCGACACGGACGCTCCCATACTGGGCATCGACTTGTTGTTGT
TCGGAGGGCACAAGATGTTGGCCGTGGTGGACTTCCAGCCCTTATCCCAG
GAGGAGGAGTACAAGGAGAGGTTCATTTCCCAGCTGGGTCCGATCAAGGC
CAAGTATCCGGCATTGAGTGAGTCGATGAGCAACCGGTATTACGAGGACA
CACGGTGGTTCTCGGAGCATATGCTTTTTGGGCGGTTGCAGGAGACGAGC
CAAGTGGAGAGCACGTTATTCCCTGCGTTCAATGAGTACATTGCTGTGTA
TTCGGACACGGTCAAGAGGTCGAGGGGGTCGGTGAAGGACGAGGAGAAGG
TCTTGGCCAGGCATCGGGCTTATGACGAGTACCAGCTAGTCCATGACCCG
GCCCACGGGTTGTTCACTGGCTACTTCGGTCCCAAATTCGCGCATGACAT
GCTGACGTTCCAGTTCGACCTAGCGGACCCGGCGTTGTTGCAGCAACAAA
AGAAGAAGGCTGGCATGGGAGGAGGAGGAGGTGCAGGAGGAAATCCGCAT
GGGCAGGGAGGAGGTAACCCGCATGCGTAGCAGCAGCAGGAGGGGAAAAT
TGAGGGCGGTGTGTCGTCAACATCTGTGGCGCAATGACGAAAAACGGCGG
CGGTGGGGTGAATAGAGTAGATGAAGGGCCATTGTGAAGACTGATAACGC
GTGTGAAACAAGAGAAGAAAGAGATAGGAACAGACAGAGGATCGGGCAAT
CGGCTTTGGGGCGCCTACTAGGCGTGTGTGTGACACAAGTTTAAATGAAG
AGAGAGAGCCGCGATTTGTTCGCCGTAGCTCTCCTGTTCCTTATAATTCG
TCACGTGATAAAAACGGCAATTTCCGCTCGCTGGTGTGTGTCTTATGTGC
GATTAAGAAACGGTGGAAATTAAAGGCACGGAGTGCGTCTGCCTGTGAGT
GCATACACTTTCCCGGTTTTTCCGCTGCATACGCGCGACAGCAGCAGATC
CATCACCGCCACCAGCACGATAGTGGGAAAGATGCAATTGACCGTTCAAT
ATACCCTTCAAGAAAGTGCTCTTAAAATTCTGAGGAGGATAGTAAAACAT
GCTCAGCCTGGCCACCATGTCATGATAAAATATTGAAAACAAAAAATAAG
CTGTAAACAAATATGAATGGGCTGAAAATGATATAATTTTGGTCACCAGG
A

protein sequence of jgi.p|Nanoce1779_2|593752

>mRNA_6101-protein ID=mRNA_6101-protein|Name=jgi.p|Nanoce1779_2|593752|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MRKDEGAEGGEMEGNKEGIKKRTLSFPSAFSTLPHPSLFLPPSLTPSLRT
ASFCVETEDFRKIRFTYMDGGKGLQVFNSVWYPRFDTDAPILGIDLLLFG
GHKMLAVVDFQPLSQEEEYKERFISQLGPIKAKYPALSESMSNRYYEDTR
WFSEHMLFGRLQETSQVESTLFPAFNEYIAVYSDTVKRSRGSVKDEEKVL
ARHRAYDEYQLVHDPAHGLFTGYFGPKFAHDMLTFQFDLADPALLQQQKK
KAGMGGGGGAGGNPHGQGGGNPHA*

mRNA from alignment at scaffold_14:516972..519438+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6101 ID=mRNA_6101|Name=jgi.p|Nanoce1779_2|593752|organism=Nannochloropsis oceanica|type=mRNA|length=2467bp|location=Sequence derived from alignment at scaffold_14:516972..519438+ (Nannochloropsis oceanica)
AACAGGTGGCGCAAAGAGCTCGCTTGTAGCAGCTAGCCGTCCTTGTTCCC
TTTCATCTGGGTCGCGACAGCCCGACATCCAACCACCAAGCCATGTCCTG
CAGTCTGTAACAATACAAACACACACCACACGTCTACCTCGCCCGCCTGC
CGATCAGCTCATACCCTCTGTCTGGCAAAAACTTCAGAAAGGTCCAACAA
CCCTCCGCACGACTTCACACAAGCAATTATGGCTTGGACCAGACCCTCCA
CCACCAGCGGCAGTATCCTCCGTCACCACCGGTGCCCGGTGCTAGCTCTG
CTACTATGCCTCTATGCGGTTGTCATCGACTCTTTCATGGTGCCTGCCCA
CACCAAGGCTTCATCAAGCCGGAGATCAAGAGTCGCTGGCGCAGCGCCCA
CCTCGCGGCTAATTCGTGGATCAACGGTACGTCGGTTTTGCGAATGCCCT
TCTGGTTCACGTCTTGGGAACGAGGGAAAGGGAGGAGACAAGGTTACTCA
CACTCATTGAGCAGCGTCCCTTCCCTCCTTCCCTTGCCTCGCTCCCTCCG
GCTTTCTGGATACCCACTCTGCTCCATTACCGCCTGTCACCCTCTCCCGT
CAGATCCTTTCACTCACTTATTCAAATGGAGACCAACAGAGTGGAATGCC
TGACACTTCCCTTCTTCTCCCCACATGCACATGAACACTCAGGTGCAAGC
CCGTGAGCCCAAGGTGAGCACCAGCACCAGCACCAGCACTACTCCTACGA
GCAACCCTCCTAACACCCCTTCCGCCGCTCAACCCCCCGTGGTCGCCCCC
GTTGTTCCTCAAGAAGCCTTGCTACCGGCATCCTTTTTCCAATCATTGCC
TTGGTCTCGCTCTATCAACGGCGATGGTGCTGAGACATTGTTGTACATGC
CTTTCTTGGAGGCGCAGATGCGACATCTCGAGGTCCATGGTGGCTTTGTC
CGCGAGCTGCCGGTGCCTGAGTCTGTCTCTTACACACGAGCTGCGAAAAA
GGCGTCGCATATGGGTAAGAAATGAGAAAGGATGAAGGGGCCGAGGGAGG
AGAAATGGAAGGAAATAAAGAGGGCATAAAAAAGCGCACGCTTTCTTTTC
CATCTGCATTTTCGACACTCCCTCACCCTTCTCTCTTTCTCCCTCCCTCC
CTCACTCCCTCCCTTCGCACAGCGAGCTTCTGCGTGGAGACTGAAGACTT
CAGAAAGATCCGCTTCACCTACATGGACGGAGGGAAGGGCCTGCAGGTTT
TCAACTCTGTGTGGTATCCGCGCTTCGACACGGACGCTCCCATACTGGGC
ATCGACTTGTTGTTGTTCGGAGGGCACAAGATGTTGGCCGTGGTGGACTT
CCAGCCCTTATCCCAGGAGGAGGAGTACAAGGAGAGGTTCATTTCCCAGC
TGGGTCCGATCAAGGCCAAGTATCCGGCATTGAGTGAGTCGATGAGCAAC
CGGTATTACGAGGACACACGGTGGTTCTCGGAGCATATGCTTTTTGGGCG
GTTGCAGGAGACGAGCCAAGTGGAGAGCACGTTATTCCCTGCGTTCAATG
AGTACATTGCTGTGTATTCGGACACGGTCAAGAGGTCGAGGGGGTCGGTG
AAGGACGAGGAGAAGGTCTTGGCCAGGCATCGGGCTTATGACGAGTACCA
GCTAGTCCATGACCCGGCCCACGGGTTGTTCACTGGCTACTTCGGTCCCA
AATTCGCGCATGACATGCTGACGTTCCAGTTCGACCTAGCGGACCCGGCG
TTGTTGCAGCAACAAAAGAAGAAGGCTGGCATGGGAGGAGGAGGAGGTGC
AGGAGGAAATCCGCATGGGCAGGGAGGAGGTAACCCGCATGCGTAGCAGC
AGCAGGAGGGGAAAATTGAGGGCGGTGTGTCGTCAACATCTGTGGCGCAA
TGACGAAAAACGGCGGCGGTGGGGTGAATAGAGTAGATGAAGGGCCATTG
TGAAGACTGATAACGCGTGTGAAACAAGAGAAGAAAGAGATAGGAACAGA
CAGAGGATCGGGCAATCGGCTTTGGGGCGCCTACTAGGCGTGTGTGTGAC
ACAAGTTTAAATGAAGAGAGAGAGCCGCGATTTGTTCGCCGTAGCTCTCC
TGTTCCTTATAATTCGTCACGTGATAAAAACGGCAATTTCCGCTCGCTGG
TGTGTGTCTTATGTGCGATTAAGAAACGGTGGAAATTAAAGGCACGGAGT
GCGTCTGCCTGTGAGTGCATACACTTTCCCGGTTTTTCCGCTGCATACGC
GCGACAGCAGCAGATCCATCACCGCCACCAGCACGATAGTGGGAAAGATG
CAATTGACCGTTCAATATACCCTTCAAGAAAGTGCTCTTAAAATTCTGAG
GAGGATAGTAAAACATGCTCAGCCTGGCCACCATGTCATGATAAAATATT
GAAAACAAAAAATAAGCTGTAAACAAATATGAATGGGCTGAAAATGATAT
AATTTTGGTCACCAGGA

Coding sequence (CDS) from alignment at scaffold_14:516972..519438+

>mRNA_6101 ID=mRNA_6101|Name=jgi.p|Nanoce1779_2|593752|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_14:516972..519438+ (Nannochloropsis oceanica)
ATGAGAAAGGATGAAGGGGCCGAGGGAGGAGAAATGGAAGGAAATAAAGA
GGGCATAAAAAAGCGCACGCTTTCTTTTCCATCTGCATTTTCGACACTCC
CTCACCCTTCTCTCTTTCTCCCTCCCTCCCTCACTCCCTCCCTTCGCACA
GCGAGCTTCTGCGTGGAGACTGAAGACTTCAGAAAGATCCGCTTCACCTA
CATGGACGGAGGGAAGGGCCTGCAGGTTTTCAACTCTGTGTGGTATCCGC
GCTTCGACACGGACGCTCCCATACTGGGCATCGACTTGTTGTTGTTCGGA
GGGCACAAGATGTTGGCCGTGGTGGACTTCCAGCCCTTATCCCAGGAGGA
GGAGTACAAGGAGAGGTTCATTTCCCAGCTGGGTCCGATCAAGGCCAAGT
ATCCGGCATTGAGTGAGTCGATGAGCAACCGGTATTACGAGGACACACGG
TGGTTCTCGGAGCATATGCTTTTTGGGCGGTTGCAGGAGACGAGCCAAGT
GGAGAGCACGTTATTCCCTGCGTTCAATGAGTACATTGCTGTGTATTCGG
ACACGGTCAAGAGGTCGAGGGGGTCGGTGAAGGACGAGGAGAAGGTCTTG
GCCAGGCATCGGGCTTATGACGAGTACCAGCTAGTCCATGACCCGGCCCA
CGGGTTGTTCACTGGCTACTTCGGTCCCAAATTCGCGCATGACATGCTGA
CGTTCCAGTTCGACCTAGCGGACCCGGCGTTGTTGCAGCAACAAAAGAAG
AAGGCTGGCATGGGAGGAGGAGGAGGTGCAGGAGGAAATCCGCATGGGCA
GGGAGGAGGTAACCCGCATGCGTAG

Synonyms

Publications