jgi.p|Nanoce1779_2|576080, mRNA_61 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576080
Unique NamemRNA_61
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length988
Alignment locationscaffold_3:172712..173878 -

Link to JBrowse

Properties
Property NameValue
TranscriptId576166
TrackFilteredModels2
ProteinId576080
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:172712..173878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576080gene_61Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576080mRNA_61-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_61CDS_61Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_61 ID=mRNA_61|Name=jgi.p|Nanoce1779_2|576080|organism=Nannochloropsis oceanica|type=mRNA|length=988bp
GTTCCCAGCCCTTGCGTGTCCCTCTCCCTCCCGTCTCCCTCCTGCCCTTC
ATAATCATCATCATCACCACATCCCCAAGATAAGCGCGCATCATGAGCTC
AACCACGACCGCAGGCTCCGCCGCCTCAGCCGTCTACACCCGCCTGACTA
TGACAGTCAAGGATGCGGCATTGGAAGCTGCCAAGAAGGCCCGGCCGCAA
TGGCATTTGATCGATGCGAAGGACCAGGTCGTCGGCCGCATCGCCAGTCA
AATCGCCCCTATCCTCCGTGGACAGCACAAGCCCTTCTTCAGCCCCAACA
CCGACTGTGGTGACTTTGTCGTGGTCGTCAATGCCCGGCACATCGCCTTC
ACGGGCCGAAAAATGAAGGATAAGCTGTACTATTGGCATACAATGCACCC
TGGCGGACTCAAGTCGCGGACCCCGCAGCAACTGATAGAAAGAGGACAGA
GCGAGGAGATACTCCGACATGCGGTGCTAGGTATGTTGCCCAAGAACAGT
CTTAGACACCAGGTGATCAAGAAACTGAGGGTGTTTCCCGAGAAATACCA
CATTTATGAGGACCAGTTGCGGGGGAAGCAGCCACTCATGTAGAGAGGGG
GGGGGAGGAAAGACAAGAGCACGTGAATCTGACAAATTCCTTACTTTCCC
CTTAAGGATGATGTTTCTAGGGGGGGAAAGGCATGACAACTGTTTATTTT
ATGTTTCTTTGTGAAGAAGGAAGGTGCATTTTTGCTTTGTTTTGTTTGTC
GGTAGAATTTCTGCTATCCGTCGTGTTTTGTTCTGTGGTTTTGTCGCGAG
CGGCGCCGTCCTAGAGAATGTCTGTACGTATATACGGAGATGGAATGCAT
AAGATAACTTGAATGAAAAAGGAAAGTCAACCACTCGGCAGAAGTCATAT
GCAACTTCCAGATTCTCCTTTACATTGCCGAGCATCGACATTTATTTTGC
GGATCGAATCGAATCAAATCAAATCAATGCCGGCTGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|576080

>mRNA_61-protein ID=mRNA_61-protein|Name=jgi.p|Nanoce1779_2|576080|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MSSTTTAGSAASAVYTRLTMTVKDAALEAAKKARPQWHLIDAKDQVVGRI
ASQIAPILRGQHKPFFSPNTDCGDFVVVVNARHIAFTGRKMKDKLYYWHT
MHPGGLKSRTPQQLIERGQSEEILRHAVLGMLPKNSLRHQVIKKLRVFPE
KYHIYEDQLRGKQPLM*
back to top

mRNA from alignment at scaffold_3:172712..173878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_61 ID=mRNA_61|Name=jgi.p|Nanoce1779_2|576080|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at scaffold_3:172712..173878- (Nannochloropsis oceanica)
GTTCCCAGCCCTTGCGTGTCCCTCTCCCTCCCGTCTCCCTCCTGCCCTTC
ATAATCATCATCATCACCACATCCCCAAGATAAGCGCGCATCATGAGCTC
AACCACGACCGCAGGCTCCGCCGCCTCAGCCGTCTACACCCGCCTGACTA
TGACAGTCAAGGATGCGGCATTGGAAGCTGCCAAGAAGGCCCGGCCGCAA
TGGCATTTGATCGATGCGAAGGACCAGGTATATGTGGGATCTGTTGACCC
TCCCTTCACCCCTTCCTCCCTCCCTTTGTCCCGTCCTCATTTTCCCTTGC
CTTACAGTTGTAGACCCTGTTTGCACGAATGAAAGATATCTTGCTGCCGG
GAAATCCCTCCCTACCTGTATCTTCTCACTCCTCTCCATTCCTCCCATTC
TCCAAGGTCGTCGGCCGCATCGCCAGTCAAATCGCCCCTATCCTCCGTGG
ACAGCACAAGCCCTTCTTCAGCCCCAACACCGACTGTGGTGACTTTGTCG
TGGTCGTCAATGCCCGGCACATCGCCTTCACGGGCCGAAAAATGAAGGAT
AAGCTGTACTATTGGCATACAATGCACCCTGGCGGACTCAAGTCGCGGAC
CCCGCAGCAACTGATAGAAAGAGGACAGAGCGAGGAGATACTCCGACATG
CGGTGCTAGGTATGTTGCCCAAGAACAGTCTTAGACACCAGGTGATCAAG
AAACTGAGGGTGTTTCCCGAGAAATACCACATTTATGAGGACCAGTTGCG
GGGGAAGCAGCCACTCATGTAGAGAGGGGGGGGGAGGAAAGACAAGAGCA
CGTGAATCTGACAAATTCCTTACTTTCCCCTTAAGGATGATGTTTCTAGG
GGGGGAAAGGCATGACAACTGTTTATTTTATGTTTCTTTGTGAAGAAGGA
AGGTGCATTTTTGCTTTGTTTTGTTTGTCGGTAGAATTTCTGCTATCCGT
CGTGTTTTGTTCTGTGGTTTTGTCGCGAGCGGCGCCGTCCTAGAGAATGT
CTGTACGTATATACGGAGATGGAATGCATAAGATAACTTGAATGAAAAAG
GAAAGTCAACCACTCGGCAGAAGTCATATGCAACTTCCAGATTCTCCTTT
ACATTGCCGAGCATCGACATTTATTTTGCGGATCGAATCGAATCAAATCA
AATCAATGCCGGCTGGG
back to top

Coding sequence (CDS) from alignment at scaffold_3:172712..173878-

>mRNA_61 ID=mRNA_61|Name=jgi.p|Nanoce1779_2|576080|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_3:172712..173878- (Nannochloropsis oceanica)
GTCGTCGGCCGCATCGCCAGTCAAATCGCCCCTATCCTCCGTGGACAGCA
CAAGCCCTTCTTCAGCCCCAACACCGACTGTGGTGACTTTGTCGTGGTCG
TCAATGCCCGGCACATCGCCTTCACGGGCCGAAAAATGAAGGATAAGCTG
TACTATTGGCATACAATGCACCCTGGCGGACTCAAGTCGCGGACCCCGCA
GCAACTGATAGAAAGAGGACAGAGCGAGGAGATACTCCGACATGCGGTGC
TAGGTATGTTGCCCAAGAACAGTCTTAGACACCAGGTGATCAAGAAACTG
AGGGTGTTTCCCGAGAAATACCACATTTATGAGGACCAGTTGCGGGGGAA
GCAGCCACTCATGTAGATGAGCTCAACCACGACCGCAGGCTCCGCCGCCT
CAGCCGTCTACACCCGCCTGACTATGACAGTCAAGGATGCGGCATTGGAA
GCTGCCAAGAAGGCCCGGCCGCAATGGCATTTGATCGATGCGAAGGACCA
GGTCGTCGGCCGCATCGCCAGTCAAATCGCCCCTATCCTCCGTGGACAGC
ACAAGCCCTTCTTCAGCCCCAACACCGACTGTGGTGACTTTGTCGTGGTC
GTCAATGCCCGGCACATCGCCTTCACGGGCCGAAAAATGAAGGATAAGCT
GTACTATTGGCATACAATGCACCCTGGCGGACTCAAGTCGCGGACCCCGC
AGCAACTGATAGAAAGAGGACAGAGCGAGGAGATACTCCGACATGCGGTG
CTAGGTATGTTGCCCAAGAACAGTCTTAGACACCAGGTGATCAAGAAACT
GAGGGTGTTTCCCGAGAAATACCACATTTATGAGGACCAGTTGCGGGGGA
AGCAGCCACTCATGTAGATGAGCTCAACCACGACCGCAGGCTCCGCCGCC
TCAGCCGTCTACACCCGCCTGACTATGACAGTCAAGGATGCGGCATTGGA
AGCTGCCAAGAAGGCCCGGCCGCAATGGCATTTGATCGATGCGAAGGACC
AG
back to top
Synonyms
Publications