jgi.p|Nanoce1779_2|649293, mRNA_6099 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|649293
Unique Name	mRNA_6099
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1211
Alignment location	scaffold_14:512341..513938 -

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Properties


Property Name	Value
TranscriptId	649379
Track	FilteredModels2
ProteinId	649293

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:512341..513938 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649293	gene_6099	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649293	mRNA_6099-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6099	CDS_6099	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:512341..513938-
coding sequence from alignment at scaffold_14:512341..513938-

mRNA sequence

>mRNA_6099 ID=mRNA_6099|Name=jgi.p|Nanoce1779_2|649293|organism=Nannochloropsis oceanica|type=mRNA|length=1211bp
GATGGTTTAAGCGACGCATTTCTCACAGCCACCTCCCGACTCCTGCAGCT
AAGCCCAAGGCATCTCTCTATTCTATACTTAAAACAACACAAGCCACAGG
ACATTCATCGGTATGAGAATAAGAAATGTATGAATCTCGTACTGATGGCT
ACGCCAGTTGCTTTCGGTGTGGGTGCCACGGGCCTGCTGCATTACCTGGC
TAGATACTCATCTACGTCCCAGCGCCAATAGACACCTCATTTCTTGCCAA
AAAACATACACACCCAAACATAACGTAGGAATCATCCATGATGATGCTTG
CAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGCCGTTTGTTGGCGCGT
GCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTCCCCTCATCATCTTCA
CCCCAGCAGCACCACAACCAATACTGCGATAGCCTCTGCACTTGGTAGCC
GTCGGCACATTTCGGACAAACTTTTTATTCGAATTGTCCCTGAATCCACC
ACCACCGACTCTCTCCACGACTTCTTCCGTTCCTATGGGCCTATCCGCGA
CGTGAGGATTGTGACCCCACCACGAGAAGACCGCCCGCCTTATGCTTTCG
TTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGATGGAGGAAATGGAA
TTTAGGCGTTTCGCGGGCCGTCTTATTTTCCCCATTTTCCACGCCGAGAA
GAGTAGCAACAACAGCAGCGGAGGTGTTCGTGGTGGTTGGGGCAGCAAGG
ACGGAGATCGACGTGGCCGCGACAGGAGGAACCAAGGAAAGGACTACTAT
TACAACAGGGACAGTAGAGGAGGAAAGGGTGGAGTGGAAGGGTATCAGAA
CTCGACGTCGCTCAACAGCAGTAACAGTACGGATCGAAAAGGTCATCAGC
AGCCGCAATATCAACACCAGCACCAACACCAGCATCAAAATGAACAACGA
AGACAGAACCAGAGACAGCCGGCAGTTGCTGAGAGTGGGGAAAGATGGGC
TCAGAGCACTGCTGCTGTTGCTGCTTCGTCGGCAGAGACGCCAGCGGTGG
CGGAAGATCTAGAAGGAACATTTACTTCTGGCAAAAGCGGGACCGATACC
CAAGGGCAGCCAACAGGGAAGAATAGTGGGAAGAAAAGGGGTTGGTACCG
GAAGAAGAAGCAGCAAGCAGAGGGAGGGGGAGGAGGAGGCGGAGGGGGAG
GGGGGGAGTGA

protein sequence of jgi.p|Nanoce1779_2|649293

>mRNA_6099-protein ID=mRNA_6099-protein|Name=jgi.p|Nanoce1779_2|649293|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MMMLAGCRSAGSGSSCRLLARAGAQAGATSPSSPHHLHPSSTTTNTAIAS
ALGSRRHISDKLFIRIVPESTTTDSLHDFFRSYGPIRDVRIVTPPREDRP
PYAFVEFENVKSALAAMEEMEFRRFAGRLIFPIFHAEKSSNNSSGGVRGG
WGSKDGDRRGRDRRNQGKDYYYNRDSRGGKGGVEGYQNSTSLNSSNSTDR
KGHQQPQYQHQHQHQHQNEQRRQNQRQPAVAESGERWAQSTAAVAASSAE
TPAVAEDLEGTFTSGKSGTDTQGQPTGKNSGKKRGWYRKKKQQAEGGGGG
GGGGGGE*

mRNA from alignment at scaffold_14:512341..513938-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6099 ID=mRNA_6099|Name=jgi.p|Nanoce1779_2|649293|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_14:512341..513938- (Nannochloropsis oceanica)
GATGGTTTAAGCGACGCATTTCTCACAGCCACCTCCCGACTCCTGCAGCT
AAGCCCAAGGCATCTCTCTATTCTATACTTAAAACAACACAAGCCACAGG
ACATTCATCGGTATGAGAATAAGAAATGTATGAATCTCGTACTGATGGCT
ACGCCAGTTGCTTTCGGTGTGGGTGCCACGGGCCTGCTGCATTACCTGGC
TAGATACTCATCTACGTCCCAGCGCCAATAGACACCTCATTTCTTGCCAA
AAAACATACACACCCAAACATAACGTAGGAATCATCCATGATGATGCTTG
CAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGCCGTTTGTTGGCGCGT
GCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTCCCCTCATCATCTTCA
CCCCAGCAGCACCACAACCAATACTGCGATAGCCTCTGCACTTGGTAGCC
GTCGGCACATTTCGGACAAACTTTTTATTCGAAGTACGTTGTGAAGTGTT
GAAAATGCTCTTGATTTAGTGGACGTGCAGAATTATGAGGTGAGCGCACG
TGACTCATACTTCCCCCGCCCTCCCCCCTTTTTGACCATACGCCCACAGT
TGTCCCTGAATCCACCACCACCGACTCTCTCCACGACTTCTTCCGTTCCT
ATGGGCCTATCCGCGACGGTACGTACACTCTCATTCCTTCTTTGTTTCGT
GAGTCAAATTGACTCATCCTTCTTTCCTCCTTTCCCTGTCAAACCACCTT
GGAACAGTGAGGATTGTGACCCCACCACGAGAAGACCGCCCGCCTTATGC
TTTCGTTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGATGGAGGAAA
TGGAATTTAGGGTACGGCTTGTTCAGTTTGTATATCTGTGTGTATTTCTA
TGTTATGTATGCGTGTATCTGTGGGCGTGCATGTATGTACGCGTCTTTGG
TGAGGTACAATGCAAGCGGGAGAGTCACCGCCAAGAAACTAACCAATTTT
CAATCTCCACCTCTCAACACCACGTAAACGACCACCCGCACAGCGTTTCG
CGGGCCGTCTTATTTTCCCCATTTTCCACGCCGAGAAGAGTAGCAACAAC
AGCAGCGGAGGTGTTCGTGGTGGTTGGGGCAGCAAGGACGGAGATCGACG
TGGCCGCGACAGGAGGAACCAAGGAAAGGACTACTATTACAACAGGGACA
GTAGAGGAGGAAAGGGTGGAGTGGAAGGGTATCAGAACTCGACGTCGCTC
AACAGCAGTAACAGTACGGATCGAAAAGGTCATCAGCAGCCGCAATATCA
ACACCAGCACCAACACCAGCATCAAAATGAACAACGAAGACAGAACCAGA
GACAGCCGGCAGTTGCTGAGAGTGGGGAAAGATGGGCTCAGAGCACTGCT
GCTGTTGCTGCTTCGTCGGCAGAGACGCCAGCGGTGGCGGAAGATCTAGA
AGGAACATTTACTTCTGGCAAAAGCGGGACCGATACCCAAGGGCAGCCAA
CAGGGAAGAATAGTGGGAAGAAAAGGGGTTGGTACCGGAAGAAGAAGCAG
CAAGCAGAGGGAGGGGGAGGAGGAGGCGGAGGGGGAGGGGGGGAGTGA

Coding sequence (CDS) from alignment at scaffold_14:512341..513938-

>mRNA_6099 ID=mRNA_6099|Name=jgi.p|Nanoce1779_2|649293|organism=Nannochloropsis oceanica|type=CDS|length=3696bp|location=Sequence derived from alignment at scaffold_14:512341..513938- (Nannochloropsis oceanica)
CGTTTCGCGGGCCGTCTTATTTTCCCCATTTTCCACGCCGAGAAGAGTAG
CAACAACAGCAGCGGAGGTGTTCGTGGTGGTTGGGGCAGCAAGGACGGAG
ATCGACGTGGCCGCGACAGGAGGAACCAAGGAAAGGACTACTATTACAAC
AGGGACAGTAGAGGAGGAAAGGGTGGAGTGGAAGGGTATCAGAACTCGAC
GTCGCTCAACAGCAGTAACAGTACGGATCGAAAAGGTCATCAGCAGCCGC
AATATCAACACCAGCACCAACACCAGCATCAAAATGAACAACGAAGACAG
AACCAGAGACAGCCGGCAGTTGCTGAGAGTGGGGAAAGATGGGCTCAGAG
CACTGCTGCTGTTGCTGCTTCGTCGGCAGAGACGCCAGCGGTGGCGGAAG
ATCTAGAAGGAACATTTACTTCTGGCAAAAGCGGGACCGATACCCAAGGG
CAGCCAACAGGGAAGAATAGTGGGAAGAAAAGGGGTTGGTACCGGAAGAA
GAAGCAGCAAGCAGAGGGAGGGGGAGGAGGAGGCGGAGGGGGAGGGGGGG
AGTGATGAGGATTGTGACCCCACCACGAGAAGACCGCCCGCCTTATGCTT
TCGTTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGATGGAGGAAATG
GAATTTAGGTTGTCCCTGAATCCACCACCACCGACTCTCTCCACGACTTC
TTCCGTTCCTATGGGCCTATCCGCGACGATGATGATGCTTGCAGGCTGTC
GGAGCGCAGGTAGCGGCAGCAGCTGCCGTTTGTTGGCGCGTGCCGGGGCT
CAAGCTGGCGCCACCTCCCCCTCGTCCCCTCATCATCTTCACCCCAGCAG
CACCACAACCAATACTGCGATAGCCTCTGCACTTGGTAGCCGTCGGCACA
TTTCGGACAAACTTTTTATTCGAACGTTTCGCGGGCCGTCTTATTTTCCC
CATTTTCCACGCCGAGAAGAGTAGCAACAACAGCAGCGGAGGTGTTCGTG
GTGGTTGGGGCAGCAAGGACGGAGATCGACGTGGCCGCGACAGGAGGAAC
CAAGGAAAGGACTACTATTACAACAGGGACAGTAGAGGAGGAAAGGGTGG
AGTGGAAGGGTATCAGAACTCGACGTCGCTCAACAGCAGTAACAGTACGG
ATCGAAAAGGTCATCAGCAGCCGCAATATCAACACCAGCACCAACACCAG
CATCAAAATGAACAACGAAGACAGAACCAGAGACAGCCGGCAGTTGCTGA
GAGTGGGGAAAGATGGGCTCAGAGCACTGCTGCTGTTGCTGCTTCGTCGG
CAGAGACGCCAGCGGTGGCGGAAGATCTAGAAGGAACATTTACTTCTGGC
AAAAGCGGGACCGATACCCAAGGGCAGCCAACAGGGAAGAATAGTGGGAA
GAAAAGGGGTTGGTACCGGAAGAAGAAGCAGCAAGCAGAGGGAGGGGGAG
GAGGAGGCGGAGGGGGAGGGGGGGAGTGATGAGGATTGTGACCCCACCAC
GAGAAGACCGCCCGCCTTATGCTTTCGTTGAGTTCGAAAACGTCAAGTCT
GCCTTGGCGGCGATGGAGGAAATGGAATTTAGGTTGTCCCTGAATCCACC
ACCACCGACTCTCTCCACGACTTCTTCCGTTCCTATGGGCCTATCCGCGA
CGATGATGATGCTTGCAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGC
CGTTTGTTGGCGCGTGCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTC
CCCTCATCATCTTCACCCCAGCAGCACCACAACCAATACTGCGATAGCCT
CTGCACTTGGTAGCCGTCGGCACATTTCGGACAAACTTTTTATTCGAACG
TTTCGCGGGCCGTCTTATTTTCCCCATTTTCCACGCCGAGAAGAGTAGCA
ACAACAGCAGCGGAGGTGTTCGTGGTGGTTGGGGCAGCAAGGACGGAGAT
CGACGTGGCCGCGACAGGAGGAACCAAGGAAAGGACTACTATTACAACAG
GGACAGTAGAGGAGGAAAGGGTGGAGTGGAAGGGTATCAGAACTCGACGT
CGCTCAACAGCAGTAACAGTACGGATCGAAAAGGTCATCAGCAGCCGCAA
TATCAACACCAGCACCAACACCAGCATCAAAATGAACAACGAAGACAGAA
CCAGAGACAGCCGGCAGTTGCTGAGAGTGGGGAAAGATGGGCTCAGAGCA
CTGCTGCTGTTGCTGCTTCGTCGGCAGAGACGCCAGCGGTGGCGGAAGAT
CTAGAAGGAACATTTACTTCTGGCAAAAGCGGGACCGATACCCAAGGGCA
GCCAACAGGGAAGAATAGTGGGAAGAAAAGGGGTTGGTACCGGAAGAAGA
AGCAGCAAGCAGAGGGAGGGGGAGGAGGAGGCGGAGGGGGAGGGGGGGAG
TGATGAGGATTGTGACCCCACCACGAGAAGACCGCCCGCCTTATGCTTTC
GTTGAGTTCGAAAACGTCAAGTCTGCCTTGGCGGCGATGGAGGAAATGGA
ATTTAGGTTGTCCCTGAATCCACCACCACCGACTCTCTCCACGACTTCTT
CCGTTCCTATGGGCCTATCCGCGACGATGATGATGCTTGCAGGCTGTCGG
AGCGCAGGTAGCGGCAGCAGCTGCCGTTTGTTGGCGCGTGCCGGGGCTCA
AGCTGGCGCCACCTCCCCCTCGTCCCCTCATCATCTTCACCCCAGCAGCA
CCACAACCAATACTGCGATAGCCTCTGCACTTGGTAGCCGTCGGCACATT
TCGGACAAACTTTTTATTCGAACGTTTCGCGGGCCGTCTTATTTTCCCCA
TTTTCCACGCCGAGAAGAGTAGCAACAACAGCAGCGGAGGTGTTCGTGGT
GGTTGGGGCAGCAAGGACGGAGATCGACGTGGCCGCGACAGGAGGAACCA
AGGAAAGGACTACTATTACAACAGGGACAGTAGAGGAGGAAAGGGTGGAG
TGGAAGGGTATCAGAACTCGACGTCGCTCAACAGCAGTAACAGTACGGAT
CGAAAAGGTCATCAGCAGCCGCAATATCAACACCAGCACCAACACCAGCA
TCAAAATGAACAACGAAGACAGAACCAGAGACAGCCGGCAGTTGCTGAGA
GTGGGGAAAGATGGGCTCAGAGCACTGCTGCTGTTGCTGCTTCGTCGGCA
GAGACGCCAGCGGTGGCGGAAGATCTAGAAGGAACATTTACTTCTGGCAA
AAGCGGGACCGATACCCAAGGGCAGCCAACAGGGAAGAATAGTGGGAAGA
AAAGGGGTTGGTACCGGAAGAAGAAGCAGCAAGCAGAGGGAGGGGGAGGA
GGAGGCGGAGGGGGAGGGGGGGAGTGATGAGGATTGTGACCCCACCACGA
GAAGACCGCCCGCCTTATGCTTTCGTTGAGTTCGAAAACGTCAAGTCTGC
CTTGGCGGCGATGGAGGAAATGGAATTTAGGTTGTCCCTGAATCCACCAC
CACCGACTCTCTCCACGACTTCTTCCGTTCCTATGGGCCTATCCGCGACG
ATGATGATGCTTGCAGGCTGTCGGAGCGCAGGTAGCGGCAGCAGCTGCCG
TTTGTTGGCGCGTGCCGGGGCTCAAGCTGGCGCCACCTCCCCCTCGTCCC
CTCATCATCTTCACCCCAGCAGCACCACAACCAATACTGCGATAGCCTCT
GCACTTGGTAGCCGTCGGCACATTTCGGACAAACTTTTTATTCGAA

Synonyms

Publications