jgi.p|Nanoce1779_2|566898, mRNA_6097 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566898
Unique NamemRNA_6097
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1086
Alignment locationscaffold_14:508376..509612 -

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Properties
Property NameValue
TranscriptId566984
TrackFilteredModels2
ProteinId566898
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:508376..509612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566898gene_6097Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566898mRNA_6097-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6097CDS_6097Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6097 ID=mRNA_6097|Name=jgi.p|Nanoce1779_2|566898|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGGAAGAGGAATACGGCCTCGACAGCGCGCACCTTATCCGTGTCCGCTT
GGAAGGGGAAGTGGCTTGCTCGCCCATGGAGCAACTGGCCGCCATGCGCG
AGGCAGAGCAATATCAAAACTGGATGCCGTTGTGCCAGCTATCTGCCCTA
CTCCACCGCGAAGGGAACGCAGATCAGGTCCTGTGGTGGTCGATGGGCAT
ACCGGGAATGTTCACGTGGGACGTCTTGCTCCACGCCTGGGGGGCTGACT
GCATGCTCGAAGACGGGTCTGTTGTCATCATCGGAGGATCCATTCTCACC
TCGGACAAGGTCAAGACAGCGGACCTTCCCCCTCCCCCAAAGGGATGGGC
GTCATGGCGCATTTCTCTGCATCAGTTTCGGATTCGTTTCAAGGTGACTT
CACCCAACACCAGTCACACCACAGTGTCATTTGTCTTAGATCCGAAGCTG
CGGGCGAAGTCCCTCGTCAATTATGTCATCAAAAAGGGAGCCGCTCTCAG
CCTTACTTTTCTGCGCCGGCACGCCGAGCGCGTCCTCACGGCGGGACCTG
CCCATCCCCTCTTCCCCACCCTCCTCTCTGACCCCTTTTATACGACGTTT
ATGGCGCCCCGAGTTTTGTGGTACGTTCAGCAACACCACCTCTCCAGCAC
CAGGGAGGGAGGGGGGAAGGAAGAGAGGAAAGGGGAGGTGCCAGCGGTCT
TGCGGTTGTTGAAAGTTGACCTGGCCAAGGCGGAGGCATCGAACCCATAC
CCGGACTATCGGGCAAACTCTTCCTCTCTCCACTCCTTTCCCTCTTTTCC
CTCCTCCTCCTTCTTCTCCTCCTTCTCCTTAAGAGATGCAGAGACGGGAA
AGGATGCAGATGAAGTGGCGTCGATGCAGCATGTGACCAAAGTGGTGGAG
GAGGACATGGAGACAAAGGGAGGGAGCGAAAGCGAGAAGTTGGCAAGTAC
GACGGAGGCAACAGCCATGGAGGAGCCGCTTGAATATACGAAGACGCTCT
TTATATGGCGGCGTGTATTGCTGATGTTTTTGGGCGTGTGCTGCTGTGTC
GGGATCTTGGTATACTATGTGGTTGTGTGGTCATAA
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protein sequence of jgi.p|Nanoce1779_2|566898

>mRNA_6097-protein ID=mRNA_6097-protein|Name=jgi.p|Nanoce1779_2|566898|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MEEEYGLDSAHLIRVRLEGEVACSPMEQLAAMREAEQYQNWMPLCQLSAL
LHREGNADQVLWWSMGIPGMFTWDVLLHAWGADCMLEDGSVVIIGGSILT
SDKVKTADLPPPPKGWASWRISLHQFRIRFKVTSPNTSHTTVSFVLDPKL
RAKSLVNYVIKKGAALSLTFLRRHAERVLTAGPAHPLFPTLLSDPFYTTF
MAPRVLWYVQQHHLSSTREGGGKEERKGEVPAVLRLLKVDLAKAEASNPY
PDYRANSSSLHSFPSFPSSSFFSSFSLRDAETGKDADEVASMQHVTKVVE
EDMETKGGSESEKLASTTEATAMEEPLEYTKTLFIWRRVLLMFLGVCCCV
GILVYYVVVWS*
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mRNA from alignment at scaffold_14:508376..509612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6097 ID=mRNA_6097|Name=jgi.p|Nanoce1779_2|566898|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp|location=Sequence derived from alignment at scaffold_14:508376..509612- (Nannochloropsis oceanica)
ATGGAAGAGGAATACGGCCTCGACAGCGCGCACCTTATCCGTGTCCGCTT
GGAAGGGGAAGTGGCTTGCTCGCCCATGGAGCAACTGGCCGCCATGCGCG
AGGCAGAGCAATATCAAAACTGGATGCCGTTGTGCCAGCTATCTGCCCTA
CTCCACCGCGAAGGGAACGCAGATCAGGTCCTGTGGTGGTCGATGGGCAT
ACCGGGAATGTTCACGTGGGACGTCTTGCTCCACGCCTGGGGGGCTGACT
GCATGCTCGAAGACGGGTCTGTTGTCATCATCGGAGGATCCATTCTCACC
TCGGACAAGGTCAAGACAGCGGACCTTCCCCCTCCCCCAAAGGGATGGGC
GTCATGGCGCATTTCTCTGCATCAGTTTCGGATTCGTTTCAAGGTGACTT
CACCCAACACCAGTCACACCACAGTGTCATTTGTCTTAGATCCGAAGCTG
CGGGCGAAGGTAAGGGATGGAAGTGTGTAGTAGCGCGCAACCTGACGTGT
TCCCTTTTGCCTTTCGCCGTGTTTCCTTTCCACAGCGCATGGTAACACGC
TGCAAGACACATGTTCACCTCATTCCCTCCTTTCCTCCTTCCTTCGCCTC
CCTCCCACAGTCCCTCGTCAATTATGTCATCAAAAAGGGAGCCGCTCTCA
GCCTTACTTTTCTGCGCCGGCACGCCGAGCGCGTCCTCACGGCGGGACCT
GCCCATCCCCTCTTCCCCACCCTCCTCTCTGACCCCTTTTATACGACGTT
TATGGCGCCCCGAGTTTTGTGGTACGTTCAGCAACACCACCTCTCCAGCA
CCAGGGAGGGAGGGGGGAAGGAAGAGAGGAAAGGGGAGGTGCCAGCGGTC
TTGCGGTTGTTGAAAGTTGACCTGGCCAAGGCGGAGGCATCGAACCCATA
CCCGGACTATCGGGCAAACTCTTCCTCTCTCCACTCCTTTCCCTCTTTTC
CCTCCTCCTCCTTCTTCTCCTCCTTCTCCTTAAGAGATGCAGAGACGGGA
AAGGATGCAGATGAAGTGGCGTCGATGCAGCATGTGACCAAAGTGGTGGA
GGAGGACATGGAGACAAAGGGAGGGAGCGAAAGCGAGAAGTTGGCAAGTA
CGACGGAGGCAACAGCCATGGAGGAGCCGCTTGAATATACGAAGACGCTC
TTTATATGGCGGCGTGTATTGCTGATGTTTTTGGGCGTGTGCTGCTGTGT
CGGGATCTTGGTATACTATGTGGTTGTGTGGTCATAA
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Coding sequence (CDS) from alignment at scaffold_14:508376..509612-

>mRNA_6097 ID=mRNA_6097|Name=jgi.p|Nanoce1779_2|566898|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_14:508376..509612- (Nannochloropsis oceanica)
TCCCTCGTCAATTATGTCATCAAAAAGGGAGCCGCTCTCAGCCTTACTTT
TCTGCGCCGGCACGCCGAGCGCGTCCTCACGGCGGGACCTGCCCATCCCC
TCTTCCCCACCCTCCTCTCTGACCCCTTTTATACGACGTTTATGGCGCCC
CGAGTTTTGTGGTACGTTCAGCAACACCACCTCTCCAGCACCAGGGAGGG
AGGGGGGAAGGAAGAGAGGAAAGGGGAGGTGCCAGCGGTCTTGCGGTTGT
TGAAAGTTGACCTGGCCAAGGCGGAGGCATCGAACCCATACCCGGACTAT
CGGGCAAACTCTTCCTCTCTCCACTCCTTTCCCTCTTTTCCCTCCTCCTC
CTTCTTCTCCTCCTTCTCCTTAAGAGATGCAGAGACGGGAAAGGATGCAG
ATGAAGTGGCGTCGATGCAGCATGTGACCAAAGTGGTGGAGGAGGACATG
GAGACAAAGGGAGGGAGCGAAAGCGAGAAGTTGGCAAGTACGACGGAGGC
AACAGCCATGGAGGAGCCGCTTGAATATACGAAGACGCTCTTTATATGGC
GGCGTGTATTGCTGATGTTTTTGGGCGTGTGCTGCTGTGTCGGGATCTTG
GTATACTATGTGGTTGTGTGGTCATAAATGGAAGAGGAATACGGCCTCGA
CAGCGCGCACCTTATCCGTGTCCGCTTGGAAGGGGAAGTGGCTTGCTCGC
CCATGGAGCAACTGGCCGCCATGCGCGAGGCAGAGCAATATCAAAACTGG
ATGCCGTTGTGCCAGCTATCTGCCCTACTCCACCGCGAAGGGAACGCAGA
TCAGGTCCTGTGGTGGTCGATGGGCATACCGGGAATGTTCACGTGGGACG
TCTTGCTCCACGCCTGGGGGGCTGACTGCATGCTCGAAGACGGGTCTGTT
GTCATCATCGGAGGATCCATTCTCACCTCGGACAAGGTCAAGACAGCGGA
CCTTCCCCCTCCCCCAAAGGGATGGGCGTCATGGCGCATTTCTCTGCATC
AGTTTCGGATTCGTTTCAAGGTGACTTCACCCAACACCAGTCACACCACA
GTGTCATTTGTCTTAGATCCGAAGCTGCGGGCGAAGTCCCTCGTCAATTA
TGTCATCAAAAAGGGAGCCGCTCTCAGCCTTACTTTTCTGCGCCGGCACG
CCGAGCGCGTCCTCACGGCGGGACCTGCCCATCCCCTCTTCCCCACCCTC
CTCTCTGACCCCTTTTATACGACGTTTATGGCGCCCCGAGTTTTGTGGTA
CGTTCAGCAACACCACCTCTCCAGCACCAGGGAGGGAGGGGGGAAGGAAG
AGAGGAAAGGGGAGGTGCCAGCGGTCTTGCGGTTGTTGAAAGTTGACCTG
GCCAAGGCGGAGGCATCGAACCCATACCCGGACTATCGGGCAAACTCTTC
CTCTCTCCACTCCTTTCCCTCTTTTCCCTCCTCCTCCTTCTTCTCCTCCT
TCTCCTTAAGAGATGCAGAGACGGGAAAGGATGCAGATGAAGTGGCGTCG
ATGCAGCATGTGACCAAAGTGGTGGAGGAGGACATGGAGACAAAGGGAGG
GAGCGAAAGCGAGAAGTTGGCAAGTACGACGGAGGCAACAGCCATGGAGG
AGCCGCTTGAATATACGAAGACGCTCTTTATATGGCGGCGTGTATTGCTG
ATGTTTTTGGGCGTGTGCTGCTGTGTCGGGATCTTGGTATACTATGTGGT
TGTGTGGTCATAAATGGAAGAGGAATACGGCCTCGACAGCGCGCACCTTA
TCCGTGTCCGCTTGGAAGGGGAAGTGGCTTGCTCGCCCATGGAGCAACTG
GCCGCCATGCGCGAGGCAGAGCAATATCAAAACTGGATGCCGTTGTGCCA
GCTATCTGCCCTACTCCACCGCGAAGGGAACGCAGATCAGGTCCTGTGGT
GGTCGATGGGCATACCGGGAATGTTCACGTGGGACGTCTTGCTCCACGCC
TGGGGGGCTGACTGCATGCTCGAAGACGGGTCTGTTGTCATCATCGGAGG
ATCCATTCTCACCTCGGACAAGGTCAAGACAGCGGACCTTCCCCCTCCCC
CAAAGGGATGGGCGTCATGGCGCATTTCTCTGCATCAGTTTCGGATTCGT
TTCAAGGTGACTTCACCCAACACCAGTCACACCACAGTGTCATTTGTCTT
AGATCCGAAGCTGCGGGCGAAG
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Synonyms
Publications