jgi.p|Nanoce1779_2|593734, mRNA_6096 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593734
Unique NamemRNA_6096
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length512
Alignment locationscaffold_14:507199..507710 +

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Properties
Property NameValue
TranscriptId593820
TrackFilteredModels2
ProteinId593734
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:507199..507710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593734gene_6096Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593734mRNA_6096-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6096CDS_6096Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6096 ID=mRNA_6096|Name=jgi.p|Nanoce1779_2|593734|organism=Nannochloropsis oceanica|type=mRNA|length=512bp
AGAAACGATAGGCTCATGGACGGGCTCAAGGTTACCTTGGAGAAGGCATT
ACCACCGTCCGCCCTCCTTCGGACATGCAAGATGTGTCACACGCAGTTCA
ACGTCAAGACAAACAACGCGCGGGCCTGTCGGTACCATCCCCACAGCTTC
ACAGGCGAGACGGCCCAACGATGGCTGCCACCTGGGCAAAACAATGGGGA
GGGGCGACGCGTTGTATTTCATTGGTGGTGTTGTAGCTCTGAAGATGAGA
ATGCACCAGGGTGTGAGACGAGGGCGCATGAGAGCTATGACTGAATTAAG
AAAGGAGTGGGGGTTCCTCGCTTTGTAATTTTCCTTGGTAAATTTGATGT
GCGAGTGAAATGCAGGGTGCTTTCCTCTCTGCTTTTCGAGAGTACATGTA
TAGCCATATGACCGCTGTGATGTGGCTGAAAAGAAACGAATCGGATCAAG
TGTGTCGCAAAGACAGACGCGAGACTTGAAAGGAAGACCATGGGGAGCCA
AACCATTTCCGT
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protein sequence of jgi.p|Nanoce1779_2|593734

>mRNA_6096-protein ID=mRNA_6096-protein|Name=jgi.p|Nanoce1779_2|593734|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MDGLKVTLEKALPPSALLRTCKMCHTQFNVKTNNARACRYHPHSFTGETA
QRWLPPGQNNGEGRRVVFHWWCCSSEDENAPGCETRAHESYD*
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mRNA from alignment at scaffold_14:507199..507710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6096 ID=mRNA_6096|Name=jgi.p|Nanoce1779_2|593734|organism=Nannochloropsis oceanica|type=mRNA|length=512bp|location=Sequence derived from alignment at scaffold_14:507199..507710+ (Nannochloropsis oceanica)
AGAAACGATAGGCTCATGGACGGGCTCAAGGTTACCTTGGAGAAGGCATT
ACCACCGTCCGCCCTCCTTCGGACATGCAAGATGTGTCACACGCAGTTCA
ACGTCAAGACAAACAACGCGCGGGCCTGTCGGTACCATCCCCACAGCTTC
ACAGGCGAGACGGCCCAACGATGGCTGCCACCTGGGCAAAACAATGGGGA
GGGGCGACGCGTTGTATTTCATTGGTGGTGTTGTAGCTCTGAAGATGAGA
ATGCACCAGGGTGTGAGACGAGGGCGCATGAGAGCTATGACTGAATTAAG
AAAGGAGTGGGGGTTCCTCGCTTTGTAATTTTCCTTGGTAAATTTGATGT
GCGAGTGAAATGCAGGGTGCTTTCCTCTCTGCTTTTCGAGAGTACATGTA
TAGCCATATGACCGCTGTGATGTGGCTGAAAAGAAACGAATCGGATCAAG
TGTGTCGCAAAGACAGACGCGAGACTTGAAAGGAAGACCATGGGGAGCCA
AACCATTTCCGT
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Coding sequence (CDS) from alignment at scaffold_14:507199..507710+

>mRNA_6096 ID=mRNA_6096|Name=jgi.p|Nanoce1779_2|593734|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_14:507199..507710+ (Nannochloropsis oceanica)
ATGGACGGGCTCAAGGTTACCTTGGAGAAGGCATTACCACCGTCCGCCCT
CCTTCGGACATGCAAGATGTGTCACACGCAGTTCAACGTCAAGACAAACA
ACGCGCGGGCCTGTCGGTACCATCCCCACAGCTTCACAGGCGAGACGGCC
CAACGATGGCTGCCACCTGGGCAAAACAATGGGGAGGGGCGACGCGTTGT
ATTTCATTGGTGGTGTTGTAGCTCTGAAGATGAGAATGCACCAGGGTGTG
AGACGAGGGCGCATGAGAGCTATGACTGA
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Synonyms
Publications