jgi.p|Nanoce1779_2|556947, mRNA_6094 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556947
Unique Name	mRNA_6094
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1847
Alignment location	scaffold_14:501631..503531 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557033
Track	FilteredModels2
ProteinId	556947

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:501631..503531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556947	gene_6094	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556947	mRNA_6094-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6094	CDS_6094	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:501631..503531+
coding sequence from alignment at scaffold_14:501631..503531+

mRNA sequence

>mRNA_6094 ID=mRNA_6094|Name=jgi.p|Nanoce1779_2|556947|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp
GCGTTGGTTGCCACGGATTTTGTCTCTTCTTTGTACATTTATATCGACCT
CGCATCTCCCGTTTGCTTTATTCGATTCAACCCCTGGTGCGGACATTTAA
TCAAGCCATGGCCGCATCAGATCGTTAATTATGCAAGATCGAGATCAAAG
TACATTGTGGTAATATTGTCTATGCGCCGTGGCATATTTTCTGGTGCAGC
TCATGCGCATGAGCTGATGCGCATGTCGCTGACGTTCATCCATTTTCTGA
ATCCCCCTTCATGAACCACCTACAGGTTTGCTTCCTTTTCCGCCGCCCAG
TTATGTCATACACCACTGAGCGAGCCTCGTCCTGGACCGCCAATGGCTCT
CAGCACCACAAGCCGACGCCCGAAGAGGCTGTTGAAAGGCTCTCCCATTA
CCACCCGGCGCATCGCCACTTCCACCGGGCCAAGAGCATGTTGAGATCTT
CGGGTCGCATCCTGATTGCTGGTTGTGGGTTTCTGGCTGACAGCTATGAT
GTGTTTGTCATTAATATTGCCCTTGAAATGATGGAACAGAATGACTATGG
AGTTCCTCTAACCCCATCTATTCGAGCTGCGGTATCTATGATGACGGTGG
TCGGCGCCTTGGCAGGCCAGCTCATTTTTGGTGTGTGCGGCGACCAATTT
GGCCGGAAATGGACCTTTATCAGCACTGCAGCTCTCACCATCCTCGGTAC
CGTCTTACAATCCGCTGCACAACCTCGCATGATGGGTCTCAATATCTGGC
AGCAGCTGATGCTCTTTCGCTTTTTCATGGGGGTCGGTGTGGGAGGAGAG
TATCCGATGGCGTCGACCGTGACTTCTGAAGGCTCGGCCGCGGCCCATCG
TGGACGAAATCTGGCCATGGTGTTCAGTATGCAAGGTGTGGGTCGAGTAT
TGTGTGCCCTCGTCCTCTTGTTCTCTGTGCATGTGATCACCGACACGAAT
TGGCAGTGGCGTTTCTCTATTTTGTTCGGGGCCGTGCCCATGATGGCTTG
TTTCAAATTTCGGTGGATGCCGGAGTCAGAGGTGTTTTTGGAAGATGTTG
GAGACAAGACCCCACCTGCTGAGCGGATGTATGTTATCCTGCATACGGTT
TGGGACAACCGGATGAAGCTGCTTGGAACAGCGGGATCCTGGTTTATTCT
CGATGTCGTTTTTTATGGCAATTCGTTGTTCTCTTCCGATGTAACGGCAG
CGATGGGTGGGGCAAATGCGAACTTGCCTGGGAATGCCTTGACAAATTTA
TATATTCAATTGATGGCCATGCCTGGATATATTTGTGGTGTGATATTCAT
GGAGCGCATAGGAAGAAAGAGGTTGCAGATGTCCGGATTCGCCGGCCAAG
CTGTCATTTTTGCGATTATGGCAATTTTTTATAAGGAGTTGAAGGGCTTG
ACGGGCCTTTTTGTGTTGCTCTATGCCTTGACGTTCTTCTTTGATGATTT
TGGCCCGAATCTTACGACGTTTGTGATTCCTGCCGAGATCTTTCCGACGG
CTGCCCGTTCGACTTGTCATGGAATCAGTGCTGCGTGTGGCAAGGCCGGT
GCTGCTGTGGGTGCGGCTGCTTTTTTGGAGATCACCAACATGGGTGTTCG
GGCTGTGTTTATTATTTGTTCGTGCCTGGCTGTGGTGGGATTGATTTGGA
CGAAGGTCTTTGTAGATGACCGGCCGCATGAGTCATTGGCCGAGGTAGAG
AATGCAGATGAGATTGAACCCGCGAAACCCGGGGAGGTGGAGGAATTGGA
AGACGCGGTGGTAGAAGGATTTGAGATGGGCAAGTTGCAGAAGCCTGAGG
GGTATGAGATCCCGTCCCGCCAGCCATCGGCGCGAGCGATCGAGTAG

protein sequence of jgi.p|Nanoce1779_2|556947

>mRNA_6094-protein ID=mRNA_6094-protein|Name=jgi.p|Nanoce1779_2|556947|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MNHLQVCFLFRRPVMSYTTERASSWTANGSQHHKPTPEEAVERLSHYHPA
HRHFHRAKSMLRSSGRILIAGCGFLADSYDVFVINIALEMMEQNDYGVPL
TPSIRAAVSMMTVVGALAGQLIFGVCGDQFGRKWTFISTAALTILGTVLQ
SAAQPRMMGLNIWQQLMLFRFFMGVGVGGEYPMASTVTSEGSAAAHRGRN
LAMVFSMQGVGRVLCALVLLFSVHVITDTNWQWRFSILFGAVPMMACFKF
RWMPESEVFLEDVGDKTPPAERMYVILHTVWDNRMKLLGTAGSWFILDVV
FYGNSLFSSDVTAAMGGANANLPGNALTNLYIQLMAMPGYICGVIFMERI
GRKRLQMSGFAGQAVIFAIMAIFYKELKGLTGLFVLLYALTFFFDDFGPN
LTTFVIPAEIFPTAARSTCHGISAACGKAGAAVGAAAFLEITNMGVRAVF
IICSCLAVVGLIWTKVFVDDRPHESLAEVENADEIEPAKPGEVEELEDAV
VEGFEMGKLQKPEGYEIPSRQPSARAIE*

mRNA from alignment at scaffold_14:501631..503531+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6094 ID=mRNA_6094|Name=jgi.p|Nanoce1779_2|556947|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp|location=Sequence derived from alignment at scaffold_14:501631..503531+ (Nannochloropsis oceanica)
GCGTTGGTTGCCACGGATTTTGTCTCTTCTTTGTACATTTATATCGACCT
CGCATCTCCCGTTTGCTTTATTCGATTCAACCCCTGGTGCGGACATTTAA
TCAAGCCATGGCCGCATCAGATCGTTAATTATGCAAGATCGAGATCAAAG
TACATTGTGGTAATATTGTCTATGCGCCGTGGCATATTTTCTGGTGCAGC
TCATGCGCATGAGCTGATGCGCATGTCGCTGACGTTCATCCATTTTCTGA
ATCCCCCTTCATGAACCACCTACAGGTTTGCTTCCTTTTCCGCCGCCCAG
TTATGTCATACACCACTGAGCGAGCCTCGTCCTGGACCGCCAATGGCTCT
CAGCACCACAAGCCGACGCCCGAAGAGGCTGTTGAAAGGCTCTCCCATTA
CCACCCGGCGCATCGCCACTTCCACCGGGCCAAGAGCATGTTGAGATCTT
CGGGTCGCATCCTGATTGCTGGTTGTGGGTTTCTGGCTGACAGCTATGAT
GTGTTTGTCATTAATATTGCCCTTGAAATGATGGAACAGAATGACTATGG
AGTTCCTCTAACCCCATCTATTCGAGCTGCGGTATCTATGATGACGGTGG
TCGGCGCCTTGGCAGGCCAGCTCATTTTTGGTGTGTGCGGCGACCAATTT
GGCCGGAAATGGACCTTTATCAGCACTGCAGCTCTCACCATCCTCGGTAC
CGTCTTACAATCCGCTGCACAACCTCGCATGATGGGTCTCAATATCTGGC
AGCAGCTGATGCTCTTTCGCTTTTTCATGGGGGTCGGTGTGGGAGGAGAG
TATCCGATGGCGTCGACCGTGACTTCTGAAGGCTCGGCCGCGGCCCATCG
TGGACGAAATCTGGCCATGGTGTTCAGTATGCAAGGTGTGGGTCGAGTAT
TGTGTGCCCTCGTCCTCTTGTTCTCTGTGCATGTGATCACCGACACGAAT
TGGCAGTGGCGTTTCTCTATTTTGTTCGGGGCCGTGCCCATGATGGCTTG
TTTCAAATTTCGGTGGATGCCGGAGTCAGAGGTGTTTTTGGAAGATGTTG
GAGACAAGACCCCACCTGCTGAGCGGATGTATGTTATCCTGCATACGGTT
TGGGACAACCGGATGAAGCTGCTTGGAACAGCGGGATCCTGGTTTATTCT
CGATGTCGTTTTTTATGGCAATTCGTTGTTCTCTTCCGATGTAACGGCAG
CGATGGGTGGGGCAAATGCGAACTTGCCTGGGAATGCCTTGACAAATTTA
TATATTCAATTGATGGCCATGCCTGGATATATTTGTGGTGTGATATTCAT
GGAGCGCATAGGAAGAAAGAGGTTGCAGATGTCCGGATTCGCCGGCCAAG
CTGTCATTTTTGCGATTATGGCAATTTTTTATAAGGAGTTGAAGGGCTTG
ACGGGCCTTTTTGTGTTGCTCTATGCCTTGACGTTCTTCTTTGATGATTT
TGGCCCGAATCTTACGACGTTTGTGATTCCTGCCGAGATCTTTCCGACGG
CTGCCCGTTCGACTTGTCATGGAATCAGTGCTGCGTGTGGCAAGGCCGGT
GCTGCTGTGGGTGCGGCTGCTTTTTTGGAGATCACCAACATGTATTGCGT
GAGGGGGAGGTGTGTTAAGGGCCGGGATGCTGATCTTCTGGACAGGGGTG
TTCGGGCTGTGTTTATTATTTGTTCGTGCCTGGCTGTGGTGGGATTGATT
TGGACGAAGGTCTTTGTAGATGACCGGCCGCATGAGTCATTGGCCGAGGT
AGAGAATGCAGATGAGATTGAACCCGCGAAACCCGGGGAGGTGGAGGAAT
TGGAAGACGCGGTGGTAGAAGGATTTGAGATGGGCAAGTTGCAGAAGCCT
GAGGGGTATGAGATCCCGTCCCGCCAGCCATCGGCGCGAGCGATCGAGTA
G

Coding sequence (CDS) from alignment at scaffold_14:501631..503531+

>mRNA_6094 ID=mRNA_6094|Name=jgi.p|Nanoce1779_2|556947|organism=Nannochloropsis oceanica|type=CDS|length=3174bp|location=Sequence derived from alignment at scaffold_14:501631..503531+ (Nannochloropsis oceanica)
ATGAACCACCTACAGGTTTGCTTCCTTTTCCGCCGCCCAGTTATGTCATA
CACCACTGAGCGAGCCTCGTCCTGGACCGCCAATGGCTCTCAGCACCACA
AGCCGACGCCCGAAGAGGCTGTTGAAAGGCTCTCCCATTACCACCCGGCG
CATCGCCACTTCCACCGGGCCAAGAGCATGTTGAGATCTTCGGGTCGCAT
CCTGATTGCTGGTTGTGGGTTTCTGGCTGACAGCTATGATGTGTTTGTCA
TTAATATTGCCCTTGAAATGATGGAACAGAATGACTATGGAGTTCCTCTA
ACCCCATCTATTCGAGCTGCGGTATCTATGATGACGGTGGTCGGCGCCTT
GGCAGGCCAGCTCATTTTTGGTGTGTGCGGCGACCAATTTGGCCGGAAAT
GGACCTTTATCAGCACTGCAGCTCTCACCATCCTCGGTACCGTCTTACAA
TCCGCTGCACAACCTCGCATGATGGGTCTCAATATCTGGCAGCAGCTGAT
GCTCTTTCGCTTTTTCATGGGGGTCGGTGTGGGAGGAGAGTATCCGATGG
CGTCGACCGTGACTTCTGAAGGCTCGGCCGCGGCCCATCGTGGACGAAAT
CTGGCCATGGTGTTCAGTATGCAAGGTGTGGGTCGAGTATTGTGTGCCCT
CGTCCTCTTGTTCTCTGTGCATGTGATCACCGACACGAATTGGCAGTGGC
GTTTCTCTATTTTGTTCGGGGCCGTGCCCATGATGGCTTGTTTCAAATTT
CGGTGGATGCCGGAGTCAGAGGTGTTTTTGGAAGATGTTGGAGACAAGAC
CCCACCTGCTGAGCGGATGTATGTTATCCTGCATACGGTTTGGGACAACC
GGATGAAGCTGCTTGGAACAGCGGGATCCTGGTTTATTCTCGATGTCGTT
TTTTATGGCAATTCGTTGTTCTCTTCCGATGTAACGGCAGCGATGGGTGG
GGCAAATGCGAACTTGCCTGGGAATGCCTTGACAAATTTATATATTCAAT
TGATGGCCATGCCTGGATATATTTGTGGTGTGATATTCATGGAGCGCATA
GGAAGAAAGAGGTTGCAGATGTCCGGATTCGCCGGCCAAGCTGTCATTTT
TGCGATTATGGCAATTTTTTATAAGGAGTTGAAGGGCTTGACGGGCCTTT
TTGTGTTGCTCTATGCCTTGACGTTCTTCTTTGATGATTTTGGCCCGAAT
CTTACGACGTTTGTGATTCCTGCCGAGATCTTTCCGACGGCTGCCCGTTC
GACTTGTCATGGAATCAGTGCTGCGTGTGGCAAGGCCGGTGCTGCTGTGG
GTGCGGCTGCTTTTTTGGAGATCACCAACATGGGTGTTCGGGCTGTGTTT
ATTATTTGTTCGTGCCTGGCTGTGGTGGGATTGATTTGGACGAAGGTCTT
TGTAGATGACCGGCCGCATGAGTCATTGGCCGAGGTAGAGAATGCAGATG
AGATTGAACCCGCGAAACCCGGGGAGGTGGAGGAATTGGAAGACGCGGTG
GTAGAAGGATTTGAGATGGGCAAGTTGCAGAAGCCTGAGGGGTATGAGAT
CCCGTCCCGCCAGCCATCGGCGCGAGCGATCGAGTAGATGAACCACCTAC
AGGTTTGCTTCCTTTTCCGCCGCCCAGTTATGTCATACACCACTGAGCGA
GCCTCGTCCTGGACCGCCAATGGCTCTCAGCACCACAAGCCGACGCCCGA
AGAGGCTGTTGAAAGGCTCTCCCATTACCACCCGGCGCATCGCCACTTCC
ACCGGGCCAAGAGCATGTTGAGATCTTCGGGTCGCATCCTGATTGCTGGT
TGTGGGTTTCTGGCTGACAGCTATGATGTGTTTGTCATTAATATTGCCCT
TGAAATGATGGAACAGAATGACTATGGAGTTCCTCTAACCCCATCTATTC
GAGCTGCGGTATCTATGATGACGGTGGTCGGCGCCTTGGCAGGCCAGCTC
ATTTTTGGTGTGTGCGGCGACCAATTTGGCCGGAAATGGACCTTTATCAG
CACTGCAGCTCTCACCATCCTCGGTACCGTCTTACAATCCGCTGCACAAC
CTCGCATGATGGGTCTCAATATCTGGCAGCAGCTGATGCTCTTTCGCTTT
TTCATGGGGGTCGGTGTGGGAGGAGAGTATCCGATGGCGTCGACCGTGAC
TTCTGAAGGCTCGGCCGCGGCCCATCGTGGACGAAATCTGGCCATGGTGT
TCAGTATGCAAGGTGTGGGTCGAGTATTGTGTGCCCTCGTCCTCTTGTTC
TCTGTGCATGTGATCACCGACACGAATTGGCAGTGGCGTTTCTCTATTTT
GTTCGGGGCCGTGCCCATGATGGCTTGTTTCAAATTTCGGTGGATGCCGG
AGTCAGAGGTGTTTTTGGAAGATGTTGGAGACAAGACCCCACCTGCTGAG
CGGATGTATGTTATCCTGCATACGGTTTGGGACAACCGGATGAAGCTGCT
TGGAACAGCGGGATCCTGGTTTATTCTCGATGTCGTTTTTTATGGCAATT
CGTTGTTCTCTTCCGATGTAACGGCAGCGATGGGTGGGGCAAATGCGAAC
TTGCCTGGGAATGCCTTGACAAATTTATATATTCAATTGATGGCCATGCC
TGGATATATTTGTGGTGTGATATTCATGGAGCGCATAGGAAGAAAGAGGT
TGCAGATGTCCGGATTCGCCGGCCAAGCTGTCATTTTTGCGATTATGGCA
ATTTTTTATAAGGAGTTGAAGGGCTTGACGGGCCTTTTTGTGTTGCTCTA
TGCCTTGACGTTCTTCTTTGATGATTTTGGCCCGAATCTTACGACGTTTG
TGATTCCTGCCGAGATCTTTCCGACGGCTGCCCGTTCGACTTGTCATGGA
ATCAGTGCTGCGTGTGGCAAGGCCGGTGCTGCTGTGGGTGCGGCTGCTTT
TTTGGAGATCACCAACATGGGTGTTCGGGCTGTGTTTATTATTTGTTCGT
GCCTGGCTGTGGTGGGATTGATTTGGACGAAGGTCTTTGTAGATGACCGG
CCGCATGAGTCATTGGCCGAGGTAGAGAATGCAGATGAGATTGAACCCGC
GAAACCCGGGGAGGTGGAGGAATTGGAAGACGCGGTGGTAGAAGGATTTG
AGATGGGCAAGTTGCAGAAGCCTGAGGGGTATGAGATCCCGTCCCGCCAG
CCATCGGCGCGAGCGATCGAGTAG

Synonyms

Publications