jgi.p|Nanoce1779_2|593723, mRNA_6092 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593723
Unique NamemRNA_6092
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length894
Alignment locationscaffold_14:497775..498668 +

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Properties
Property NameValue
TranscriptId593809
TrackFilteredModels2
ProteinId593723
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:497775..498668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593723gene_6092Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593723mRNA_6092-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6092CDS_6092Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6092 ID=mRNA_6092|Name=jgi.p|Nanoce1779_2|593723|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
GCCTGCTATTCGAGGAGGAGGGTTTTCATCTCCGCAGCAGCAGCAGCAGC
AGCCGCCGCCGAGAGGGAACCCGTTTAGTGTTTTTGACGTCTCTCCAACT
CAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAATACCACTACCAGCG
GCCGCAGCAGGAGCAGCAACCGGCGGCCGCTGCACCCACATTTAGCAGTA
GTAGTCCATTTCCTGGATTTTAGGTTTGGATGGAAGGGAAGAAGGGCGGC
CGGAAGGCAGGAAGGGAGAGGAGGTATGTTATGGCCACCGGTGCACGACA
ATAGGGCGGAATGAGAACTGGAGTTTCCTATCCTTTCTTGTTTTGACAAG
CGAGAATCTAATGGGTCCCTGCCTGTTCATCGGCTTGCTTGCAGGACCTC
TGGTATCGCATGGCTCCAACTTGCTGGATGCCATGGTCATTGCTGGATGC
CATGGTCAGGGGTCACGACGCCGTGATAGGAAGAGGGGCAAGAGACCATC
ATACACGACAGCGCAGGCATACGATTTGTCCATTTTTCCAGTATTTTATC
AAATATATGCGATATATAGTTGCCAAGAGAGAAGAGGGATTGTGGGGAAT
AGTGAGAAGGATCGTGGGTGAGGGGATTGTATGAAATAGGAGAGTGTTGT
GAAAGAAAAGAGAAGAATGGGAAAGACGACAGTCGGAAATCGCCGCGTTC
CTTCCTTTCTCCCAGAGGCAGTAAAAGTGATGGTTGGTGGGTGGGTGTCC
TCAAAGGGATGGTGGGTGGGTGGTGGTCTTGTACTGCTTGAGAGGACGTG
AATGCACACCCGATCGAGATACAAGCTGAGGCAGGAACAACGAAGGAATA
GGAAGAAAGAGGGAGAGGGAAAGAAACAATAAGACAAGAGAGCA
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protein sequence of jgi.p|Nanoce1779_2|593723

>mRNA_6092-protein ID=mRNA_6092-protein|Name=jgi.p|Nanoce1779_2|593723|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MGPCLFIGLLAGPLVSHGSNLLDAMVIAGCHGQGSRRRDRKRGKRPSYTT
AQAYDLSIFPVFYQIYAIYSCQERRGIVGNSEKDRG*
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mRNA from alignment at scaffold_14:497775..498668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6092 ID=mRNA_6092|Name=jgi.p|Nanoce1779_2|593723|organism=Nannochloropsis oceanica|type=mRNA|length=894bp|location=Sequence derived from alignment at scaffold_14:497775..498668+ (Nannochloropsis oceanica)
GCCTGCTATTCGAGGAGGAGGGTTTTCATCTCCGCAGCAGCAGCAGCAGC
AGCCGCCGCCGAGAGGGAACCCGTTTAGTGTTTTTGACGTCTCTCCAACT
CAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAATACCACTACCAGCG
GCCGCAGCAGGAGCAGCAACCGGCGGCCGCTGCACCCACATTTAGCAGTA
GTAGTCCATTTCCTGGATTTTAGGTTTGGATGGAAGGGAAGAAGGGCGGC
CGGAAGGCAGGAAGGGAGAGGAGGTATGTTATGGCCACCGGTGCACGACA
ATAGGGCGGAATGAGAACTGGAGTTTCCTATCCTTTCTTGTTTTGACAAG
CGAGAATCTAATGGGTCCCTGCCTGTTCATCGGCTTGCTTGCAGGACCTC
TGGTATCGCATGGCTCCAACTTGCTGGATGCCATGGTCATTGCTGGATGC
CATGGTCAGGGGTCACGACGCCGTGATAGGAAGAGGGGCAAGAGACCATC
ATACACGACAGCGCAGGCATACGATTTGTCCATTTTTCCAGTATTTTATC
AAATATATGCGATATATAGTTGCCAAGAGAGAAGAGGGATTGTGGGGAAT
AGTGAGAAGGATCGTGGGTGAGGGGATTGTATGAAATAGGAGAGTGTTGT
GAAAGAAAAGAGAAGAATGGGAAAGACGACAGTCGGAAATCGCCGCGTTC
CTTCCTTTCTCCCAGAGGCAGTAAAAGTGATGGTTGGTGGGTGGGTGTCC
TCAAAGGGATGGTGGGTGGGTGGTGGTCTTGTACTGCTTGAGAGGACGTG
AATGCACACCCGATCGAGATACAAGCTGAGGCAGGAACAACGAAGGAATA
GGAAGAAAGAGGGAGAGGGAAAGAAACAATAAGACAAGAGAGCA
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Coding sequence (CDS) from alignment at scaffold_14:497775..498668+

>mRNA_6092 ID=mRNA_6092|Name=jgi.p|Nanoce1779_2|593723|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_14:497775..498668+ (Nannochloropsis oceanica)
ATGGGTCCCTGCCTGTTCATCGGCTTGCTTGCAGGACCTCTGGTATCGCA
TGGCTCCAACTTGCTGGATGCCATGGTCATTGCTGGATGCCATGGTCAGG
GGTCACGACGCCGTGATAGGAAGAGGGGCAAGAGACCATCATACACGACA
GCGCAGGCATACGATTTGTCCATTTTTCCAGTATTTTATCAAATATATGC
GATATATAGTTGCCAAGAGAGAAGAGGGATTGTGGGGAATAGTGAGAAGG
ATCGTGGGTGA
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Synonyms
Publications