jgi.p|Nanoce1779_2|529825, mRNA_6091 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529825
Unique NamemRNA_6091
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length456
Alignment locationscaffold_14:495839..496623 +

Link to JBrowse

Properties
Property NameValue
TranscriptId529911
TrackFilteredModels2
ProteinId529825
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:495839..496623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529825gene_6091Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529825mRNA_6091-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6091CDS_6091Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6091 ID=mRNA_6091|Name=jgi.p|Nanoce1779_2|529825|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
ATGGTGGACGAGGCCAAGAATCAAATCGTCCCCCGGACCGAGATGGAGAA
GAGGATGGGAGAAGCTCTATCAAACAAGAATTGGGGGGCGTCATCCACGT
TGATGAATCAAATCGCCTCGGACACGTACGATTATGAGAAGTACCACCAA
GTGATGAAAGCCATCTGGAGCGCACTCGACCAGCCAGGTCGCAACTGGCG
CTCGGTCTTCAAGTCCCTGACGTTATTGGACCACCTGGTGAAGAACGGAG
CGGAACGAGTGGTGGAAGATGTGCGAGACCATTTGCATAAGATTCGCACC
CTTGTAGACTTCCACCACATGGAGGGGATGACTGACCGGGGGTCCGGCGT
CAGGGAACGCGCCAAACAATTGATGGAATTGGTGGGCGAGAACGAGAGGG
TGAGGGAGGAAAGGGAGAAAGCGAGGAGGCTGCGGGAAAAATTTGTGGGC
ATCGGA
back to top

protein sequence of jgi.p|Nanoce1779_2|529825

>mRNA_6091-protein ID=mRNA_6091-protein|Name=jgi.p|Nanoce1779_2|529825|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MVDEAKNQIVPRTEMEKRMGEALSNKNWGASSTLMNQIASDTYDYEKYHQ
VMKAIWSALDQPGRNWRSVFKSLTLLDHLVKNGAERVVEDVRDHLHKIRT
LVDFHHMEGMTDRGSGVRERAKQLMELVGENERVREEREKARRLREKFVG
IG
back to top

mRNA from alignment at scaffold_14:495839..496623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6091 ID=mRNA_6091|Name=jgi.p|Nanoce1779_2|529825|organism=Nannochloropsis oceanica|type=mRNA|length=785bp|location=Sequence derived from alignment at scaffold_14:495839..496623+ (Nannochloropsis oceanica)
ATGGTGGACGAGGCCAAGAATCAAATCGTCCCCCGGACCGAGATGGAGAA
GAGGATGGGAGAAGCTCTATCAAACAAGAATTGGGGGGCGTCATCCACGT
TGATGAATCAAATCGCCTCGGACACGTACGATTATGAGAAGTAAGTGCGG
GAGCAGGAAAGGAGGGAGGGCGAGAATGAGAGAGGGTGGAAGGAGGGAGG
ACGACATGGAGGGAGAGTCGGAGGGAGAAAAGGAAAGGTCGTGGAAAAAT
CGTCACGGTCGAAGGGCTATGTCCTTCCCATACCAAGCATTCACTCTCCC
TCCCTCCCTCTCCCTCCCTCCATCCATCCGTCCCCTCCCCTTCAGGTACC
ACCAAGTGATGAAAGCCATCTGGAGCGCACTCGACCAGCCAGGTCGCAAC
TGGCGCTCGGTCTTCAAGTCCCTGACGTTATTGGACCACCTGGTGAAGAA
CGGAGCGGAACGAGTGGTGGAAGATGTGAGTGACACGGTGTTTATGTGAC
TCTCCCCGTCCTGTCTTGTTCTCCTCATACTCATTGGCCGCTCTTCCCAC
GGGTCTTTCCCTCCGTCCCCTTCACCTCCACTCGCTCTGTCCCTCACAGG
TGCGAGACCATTTGCATAAGATTCGCACCCTTGTAGACTTCCACCACATG
GAGGGGATGACTGACCGGGGGTCCGGCGTCAGGGAACGCGCCAAACAATT
GATGGAATTGGTGGGCGAGAACGAGAGGGTGAGGGAGGAAAGGGAGAAAG
CGAGGAGGCTGCGGGAAAAATTTGTGGGCATCGGA
back to top

Coding sequence (CDS) from alignment at scaffold_14:495839..496623+

>mRNA_6091 ID=mRNA_6091|Name=jgi.p|Nanoce1779_2|529825|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_14:495839..496623+ (Nannochloropsis oceanica)
ATGGTGGACGAGGCCAAGAATCAAATCGTCCCCCGGACCGAGATGGAGAA
GAGGATGGGAGAAGCTCTATCAAACAAGAATTGGGGGGCGTCATCCACGT
TGATGAATCAAATCGCCTCGGACACGTACGATTATGAGAAGTACCACCAA
GTGATGAAAGCCATCTGGAGCGCACTCGACCAGCCAGGTCGCAACTGGCG
CTCGGTCTTCAAGTCCCTGACGTTATTGGACCACCTGGTGAAGAACGGAG
CGGAACGAGTGGTGGAAGATGTGCGAGACCATTTGCATAAGATTCGCACC
CTTGTAGACTTCCACCACATGGAGGGGATGACTGACCGGGGGTCCGGCGT
CAGGGAACGCGCCAAACAATTGATGGAATTGGTGGGCGAGAACGAGAGGG
TGAGGGAGGAAAGGGAGAAAGCGAGGAGGCTGCGGGAAAAATTTGTGGGC
ATCGGAATGGTGGACGAGGCCAAGAATCAAATCGTCCCCCGGACCGAGAT
GGAGAAGAGGATGGGAGAAGCTCTATCAAACAAGAATTGGGGGGCGTCAT
CCACGTTGATGAATCAAATCGCCTCGGACACGTACGATTATGAGAAGTAC
CACCAAGTGATGAAAGCCATCTGGAGCGCACTCGACCAGCCAGGTCGCAA
CTGGCGCTCGGTCTTCAAGTCCCTGACGTTATTGGACCACCTGGTGAAGA
ACGGAGCGGAACGAGTGGTGGAAGATGTGCGAGACCATTTGCATAAGATT
CGCACCCTTGTAGACTTCCACCACATGGAGGGGATGACTGACCGGGGGTC
CGGCGTCAGGGAACGCGCCAAACAATTGATGGAATTGGTGGGCGAGAACG
AGAGGGTGAGGGAGGAAAGGGAGAAAGCGAGGAGGCTGCGGGAAAAATTT
GTGGGCATCGGAATGGTGGACGAGGCCAAGAATCAAATCGTCCCCCGGAC
CGAGATGGAGAAGAGGATGGGAGAAGCTCTATCAAACAAGAATTGGGGGG
CGTCATCCACGTTGATGAATCAAATCGCCTCGGACACGTACGATTATGAG
AAGTACCACCAAGTGATGAAAGCCATCTGGAGCGCACTCGACCAGCCAGG
TCGCAACTGGCGCTCGGTCTTCAAGTCCCTGACGTTATTGGACCACCTGG
TGAAGAACGGAGCGGAACGAGTGGTGGAAGATGTGCGAGACCATTTGCAT
AAGATTCGCACCCTTGTAGACTTCCACCACATGGAGGGGATGACTGACCG
GGGGTCCGGCGTCAGGGAACGCGCCAAACAATTGATGGAATTGGTGGGCG
AGAACGAGAGGGTGAGGGAGGAAAGGGAGAAAGCGAGGAGGCTGCGGGAA
AAATTTGTGGGCATCGGA
back to top
Synonyms
Publications