jgi.p|Nanoce1779_2|529956, mRNA_6090 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|529956
Unique Name	mRNA_6090
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1674
Alignment location	scaffold_14:492572..494344 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	530042
Track	FilteredModels2
ProteinId	529956

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:492572..494344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529956	gene_6090	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529956	mRNA_6090-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6090	CDS_6090	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:492572..494344+
coding sequence from alignment at scaffold_14:492572..494344+

mRNA sequence

>mRNA_6090 ID=mRNA_6090|Name=jgi.p|Nanoce1779_2|529956|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ATGACCACGACCGCCGTTGCTGCCAGCCCAGGCACAAAGTCAGCCGCAGC
CACTGCCGCCCGTGCTGTGGTCTCCATCCATTGGTTCCGCAAAGGCCTAC
GTCTGCACGACAACCCTGCCTTCTTAGAGGCCTGTCAAGGCGCCACGCAC
GTCTTTCCCGTGTTCATCCTCGACCCGCACTTTGCCAAGCCCGAGAAGAT
TGGCGTGTTGCGCTATCGGTTCATGCTTCAAACCATTCAAGACCTCGATG
ACAACCTCCGGAAGCTCGGCTCACGGCTCTATGTCGTCCAAGGCCAGCCT
GTGGAAGCCCTCCCTCGCTTGTTTGCTCGCTGGGGCGTTACCAAACTAAC
ATTCGAGAGCGACATCGAACCATACGCTAAGCAGCGAGACAATGCCGTCT
GTCGCCTAGCCGCAGCAAAAGGAGTGGCCGTCCACACCTTTGCCTCCCAC
ACGTTACATGACCCCGAAAAATACGTGGCGAAGTTACAGGGCAAAGGCCC
CCCGACTGTCTATCAATCTTTTTTGAAGATTTTTAGTTCCCTGGGGCCAG
TTCCATCGGTGGTGCCAATGGTGGATGCCTCGGTAATACTGCCCCCATTG
CCAAAAGCGTTGTGGAAGGGAGAAGCAGTCACAGCAGTCCAGGATGAATT
CCGCGTCCCCACTCTCATCGAAATGGGTTACCCGGACACAGACGCCCCTA
CTCTCTACCCAGGTGGGGAAACCGCCGCCTTGGCCCGCATGGACCTTCAC
TTGTCCAACATCAAATACATCACCACCTTCGAAAAACCCAAGACCTCCCC
CAATGCCCTGCGCCCTTCCACCACCGTCTTGTCGCCATATCTCAAGCACG
GTGCGCTCTCGGCCCGCCTGTTCTATCACTCCCTGTCCTCAGTCCTAGCG
AAGCACAAGGGCCCCCACACCCAGCCCCCTGTCTCCCTGGTCGGTCAGAT
GCTTTGGCGTGAATTTTACTACCTCCATGGGCACGCCACCAAGAACTATG
ACAAAATGGAGGGCAATCCCATATGTCGTCAGATCCCGTGGGGGCAGGAC
AAGGAGTTATTAGCTGCATGGGAGGAGGGGAGGACGGGCTATCCCTTTGT
TGATGCCTGCATGACTCAGTTGAGGGAGGAGGGGTGGATCCATCACTTGG
CAAGGCATGCGCTGGCTTGCTTCTTGACCCGAGGAGATCTGTGGCAGAGC
TGGGAGGAGGGTGCGCGGGTGTTTGAGATATATTTACTGGACGCGGACTG
GTCGTTGAACACGGGCAACTGGTTGTGGTTGTCGGCGTCCGCATTTTTCC
ACCAGTATTTCCGGGTTTATAGCCCCGTGGCGTTCGGGATGAAGACGGAT
AAGGAGGGAGAGTACATTAAGAAATACGTGCCGGTTCTCAGGAAGATGCC
TGTTAAATACATTTATGAGCCTTGGAAGGCCCCAAAGGCTGTGCAGGAGG
CGGCCGGATGTGTGGTAGGGAGGGATTACCCTATGCCGGTGGTGGAGCAT
TCGGTGGTGAGTAAGGCTTTGATGGGGAGGATGAAGATGGCATATGATGC
GGGAAAAGCGGAGGGAGGAGGGGAGGGAGGAGAAGATAAGGGAGGAGGCG
TGAAAAAGCGCGCGGCTGCATCAGCGGGAGCAGGAGATGGAGCGGTGGGT
GGCAAGTTGAAAAAGAGGGCCTGA

protein sequence of jgi.p|Nanoce1779_2|529956

>mRNA_6090-protein ID=mRNA_6090-protein|Name=jgi.p|Nanoce1779_2|529956|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MTTTAVAASPGTKSAAATAARAVVSIHWFRKGLRLHDNPAFLEACQGATH
VFPVFILDPHFAKPEKIGVLRYRFMLQTIQDLDDNLRKLGSRLYVVQGQP
VEALPRLFARWGVTKLTFESDIEPYAKQRDNAVCRLAAAKGVAVHTFASH
TLHDPEKYVAKLQGKGPPTVYQSFLKIFSSLGPVPSVVPMVDASVILPPL
PKALWKGEAVTAVQDEFRVPTLIEMGYPDTDAPTLYPGGETAALARMDLH
LSNIKYITTFEKPKTSPNALRPSTTVLSPYLKHGALSARLFYHSLSSVLA
KHKGPHTQPPVSLVGQMLWREFYYLHGHATKNYDKMEGNPICRQIPWGQD
KELLAAWEEGRTGYPFVDACMTQLREEGWIHHLARHALACFLTRGDLWQS
WEEGARVFEIYLLDADWSLNTGNWLWLSASAFFHQYFRVYSPVAFGMKTD
KEGEYIKKYVPVLRKMPVKYIYEPWKAPKAVQEAAGCVVGRDYPMPVVEH
SVVSKALMGRMKMAYDAGKAEGGGEGGEDKGGGVKKRAAASAGAGDGAVG
GKLKKRA*

mRNA from alignment at scaffold_14:492572..494344+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6090 ID=mRNA_6090|Name=jgi.p|Nanoce1779_2|529956|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp|location=Sequence derived from alignment at scaffold_14:492572..494344+ (Nannochloropsis oceanica)
ATGACCACGACCGCCGTTGCTGCCAGCCCAGGCACAAAGTCAGCCGCAGC
CACTGCCGCCCGTGCTGTGGTCTCCATCCATTGGTTCCGCAAAGGCCTAC
GTCTGCACGACAACCCTGCCTTCTTAGAGGCCTGTCAAGGCGCCACGCAC
GTCTTTCCCGTGTTCATCCTCGACCCGCACTTTGCCAAGCCCGAGAAGAT
TGGCGTGTTGCGCTATCGGTTCATGCTTCAAACCATTCAAGACCTCGATG
ACAACCTCCGGAAGCTCGGCTCACGGCTCTATGTCGTCCAAGGCCAGCCT
GTGGAAGCCCTCCCTCGCTTGTTTGCTCGCTGGGGCGTTACCAAACTAAC
ATTCGAGAGCGACATCGAACCATACGCTAAGCAGCGAGACAATGCCGTCT
GTCGCCTAGCCGCAGCAAAAGGAGTGGCCGTCCACACCTTTGCCTCCCAC
ACGTTACATGACCCCGAAAAATACGTGGCGAAGTTACAGGGCAAAGGCCC
CCCGACTGTCTATCAATCTTTTTTGAAGATTTTTAGTTCCCTGGGGCCAG
TTCCATCGGTGGTGCCAATGGTGGATGCCTCGGTAATACTGCCCCCATTG
CCAAAAGCGTTGTGGAAGGGTGATGAAGAGGGCGAAGGAGGAGGAGGAGG
AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GGGGAGATCAAGGAGAAGGAGAAGCAGTCACAGCAGTCCAGGATGAATTC
CGCGTCCCCACTCTCATCGAAATGGGTTACCCGGACACAGACGCCCCTAC
TCTCTACCCAGGTGGGGAAACCGCCGCCTTGGCCCGCATGGACCTTCACT
TGTCCAACATCAAATACATCACCACCTTCGAAAAACCCAAGACCTCCCCC
AATGCCCTGCGCCCTTCCACCACCGTCTTGTCGCCATATCTCAAGCACGG
TGCGCTCTCGGCCCGCCTGTTCTATCACTCCCTGTCCTCAGTCCTAGCGA
AGCACAAGGGCCCCCACACCCAGCCCCCTGTCTCCCTGGTCGGTCAGATG
CTTTGGCGTGAATTTTACTACCTCCATGGGCACGCCACCAAGAACTATGA
CAAAATGGAGGGCAATCCCATATGTCGTCAGATCCCGTGGGGGCAGGACA
AGGAGTTATTAGCTGCATGGGAGGAGGGGAGGACGGGCTATCCCTTTGTT
GATGCCTGCATGACTCAGTTGAGGGAGGAGGGGTGGATCCATCACTTGGC
AAGGCATGCGCTGGCTTGCTTCTTGACCCGAGGAGATCTGTGGCAGAGCT
GGGAGGAGGGTGCGCGGGTGTTTGAGATATATTTACTGGACGCGGACTGG
TCGTTGAACACGGGCAACTGGTTGTGGTTGTCGGCGTCCGCATTTTTCCA
CCAGTATTTCCGGGTTTATAGCCCCGTGGCGTTCGGGATGAAGACGGATA
AGGAGGGAGAGTACATTAAGAAATACGTGCCGGTTCTCAGGAAGATGCCT
GTTAAATACATTTATGAGCCTTGGAAGGCCCCAAAGGCTGTGCAGGAGGC
GGCCGGATGTGTGGTAGGGAGGGATTACCCTATGCCGGTGGTGGAGCATT
CGGTGGTGAGTAAGGCTTTGATGGGGAGGATGAAGATGGCATATGATGCG
GGAAAAGCGGAGGGAGGAGGGGAGGGAGGAGAAGATAAGGGAGGAGGCGT
GAAAAAGCGCGCGGCTGCATCAGCGGGAGCAGGAGATGGAGCGGTGGGTG
GCAAGTTGAAAAAGAGGGCCTGA

Coding sequence (CDS) from alignment at scaffold_14:492572..494344+

>mRNA_6090 ID=mRNA_6090|Name=jgi.p|Nanoce1779_2|529956|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_14:492572..494344+ (Nannochloropsis oceanica)
ATGACCACGACCGCCGTTGCTGCCAGCCCAGGCACAAAGTCAGCCGCAGC
CACTGCCGCCCGTGCTGTGGTCTCCATCCATTGGTTCCGCAAAGGCCTAC
GTCTGCACGACAACCCTGCCTTCTTAGAGGCCTGTCAAGGCGCCACGCAC
GTCTTTCCCGTGTTCATCCTCGACCCGCACTTTGCCAAGCCCGAGAAGAT
TGGCGTGTTGCGCTATCGGTTCATGCTTCAAACCATTCAAGACCTCGATG
ACAACCTCCGGAAGCTCGGCTCACGGCTCTATGTCGTCCAAGGCCAGCCT
GTGGAAGCCCTCCCTCGCTTGTTTGCTCGCTGGGGCGTTACCAAACTAAC
ATTCGAGAGCGACATCGAACCATACGCTAAGCAGCGAGACAATGCCGTCT
GTCGCCTAGCCGCAGCAAAAGGAGTGGCCGTCCACACCTTTGCCTCCCAC
ACGTTACATGACCCCGAAAAATACGTGGCGAAGTTACAGGGCAAAGGCCC
CCCGACTGTCTATCAATCTTTTTTGAAGATTTTTAGTTCCCTGGGGCCAG
TTCCATCGGTGGTGCCAATGGTGGATGCCTCGGTAATACTGCCCCCATTG
CCAAAAGCGTTGTGGAAGGGAGAAGCAGTCACAGCAGTCCAGGATGAATT
CCGCGTCCCCACTCTCATCGAAATGGGTTACCCGGACACAGACGCCCCTA
CTCTCTACCCAGGTGGGGAAACCGCCGCCTTGGCCCGCATGGACCTTCAC
TTGTCCAACATCAAATACATCACCACCTTCGAAAAACCCAAGACCTCCCC
CAATGCCCTGCGCCCTTCCACCACCGTCTTGTCGCCATATCTCAAGCACG
GTGCGCTCTCGGCCCGCCTGTTCTATCACTCCCTGTCCTCAGTCCTAGCG
AAGCACAAGGGCCCCCACACCCAGCCCCCTGTCTCCCTGGTCGGTCAGAT
GCTTTGGCGTGAATTTTACTACCTCCATGGGCACGCCACCAAGAACTATG
ACAAAATGGAGGGCAATCCCATATGTCGTCAGATCCCGTGGGGGCAGGAC
AAGGAGTTATTAGCTGCATGGGAGGAGGGGAGGACGGGCTATCCCTTTGT
TGATGCCTGCATGACTCAGTTGAGGGAGGAGGGGTGGATCCATCACTTGG
CAAGGCATGCGCTGGCTTGCTTCTTGACCCGAGGAGATCTGTGGCAGAGC
TGGGAGGAGGGTGCGCGGGTGTTTGAGATATATTTACTGGACGCGGACTG
GTCGTTGAACACGGGCAACTGGTTGTGGTTGTCGGCGTCCGCATTTTTCC
ACCAGTATTTCCGGGTTTATAGCCCCGTGGCGTTCGGGATGAAGACGGAT
AAGGAGGGAGAGTACATTAAGAAATACGTGCCGGTTCTCAGGAAGATGCC
TGTTAAATACATTTATGAGCCTTGGAAGGCCCCAAAGGCTGTGCAGGAGG
CGGCCGGATGTGTGGTAGGGAGGGATTACCCTATGCCGGTGGTGGAGCAT
TCGGTGGTGAGTAAGGCTTTGATGGGGAGGATGAAGATGGCATATGATGC
GGGAAAAGCGGAGGGAGGAGGGGAGGGAGGAGAAGATAAGGGAGGAGGCG
TGAAAAAGCGCGCGGCTGCATCAGCGGGAGCAGGAGATGGAGCGGTGGGT
GGCAAGTTGAAAAAGAGGGCCTGAATGACCACGACCGCCGTTGCTGCCAG
CCCAGGCACAAAGTCAGCCGCAGCCACTGCCGCCCGTGCTGTGGTCTCCA
TCCATTGGTTCCGCAAAGGCCTACGTCTGCACGACAACCCTGCCTTCTTA
GAGGCCTGTCAAGGCGCCACGCACGTCTTTCCCGTGTTCATCCTCGACCC
GCACTTTGCCAAGCCCGAGAAGATTGGCGTGTTGCGCTATCGGTTCATGC
TTCAAACCATTCAAGACCTCGATGACAACCTCCGGAAGCTCGGCTCACGG
CTCTATGTCGTCCAAGGCCAGCCTGTGGAAGCCCTCCCTCGCTTGTTTGC
TCGCTGGGGCGTTACCAAACTAACATTCGAGAGCGACATCGAACCATACG
CTAAGCAGCGAGACAATGCCGTCTGTCGCCTAGCCGCAGCAAAAGGAGTG
GCCGTCCACACCTTTGCCTCCCACACGTTACATGACCCCGAAAAATACGT
GGCGAAGTTACAGGGCAAAGGCCCCCCGACTGTCTATCAATCTTTTTTGA
AGATTTTTAGTTCCCTGGGGCCAGTTCCATCGGTGGTGCCAATGGTGGAT
GCCTCGGTAATACTGCCCCCATTGCCAAAAGCGTTGTGGAAGGGAGAAGC
AGTCACAGCAGTCCAGGATGAATTCCGCGTCCCCACTCTCATCGAAATGG
GTTACCCGGACACAGACGCCCCTACTCTCTACCCAGGTGGGGAAACCGCC
GCCTTGGCCCGCATGGACCTTCACTTGTCCAACATCAAATACATCACCAC
CTTCGAAAAACCCAAGACCTCCCCCAATGCCCTGCGCCCTTCCACCACCG
TCTTGTCGCCATATCTCAAGCACGGTGCGCTCTCGGCCCGCCTGTTCTAT
CACTCCCTGTCCTCAGTCCTAGCGAAGCACAAGGGCCCCCACACCCAGCC
CCCTGTCTCCCTGGTCGGTCAGATGCTTTGGCGTGAATTTTACTACCTCC
ATGGGCACGCCACCAAGAACTATGACAAAATGGAGGGCAATCCCATATGT
CGTCAGATCCCGTGGGGGCAGGACAAGGAGTTATTAGCTGCATGGGAGGA
GGGGAGGACGGGCTATCCCTTTGTTGATGCCTGCATGACTCAGTTGAGGG
AGGAGGGGTGGATCCATCACTTGGCAAGGCATGCGCTGGCTTGCTTCTTG
ACCCGAGGAGATCTGTGGCAGAGCTGGGAGGAGGGTGCGCGGGTGTTTGA
GATATATTTACTGGACGCGGACTGGTCGTTGAACACGGGCAACTGGTTGT
GGTTGTCGGCGTCCGCATTTTTCCACCAGTATTTCCGGGTTTATAGCCCC
GTGGCGTTCGGGATGAAGACGGATAAGGAGGGAGAGTACATTAAGAAATA
CGTGCCGGTTCTCAGGAAGATGCCTGTTAAATACATTTATGAGCCTTGGA
AGGCCCCAAAGGCTGTGCAGGAGGCGGCCGGATGTGTGGTAGGGAGGGAT
TACCCTATGCCGGTGGTGGAGCATTCGGTGGTGAGTAAGGCTTTGATGGG
GAGGATGAAGATGGCATATGATGCGGGAAAAGCGGAGGGAGGAGGGGAGG
GAGGAGAAGATAAGGGAGGAGGCGTGAAAAAGCGCGCGGCTGCATCAGCG
GGAGCAGGAGATGGAGCGGTGGGTGGCAAGTTGAAAAAGAGGGCCTGA

Synonyms

Publications