jgi.p|Nanoce1779_2|247046, mRNA_609 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|247046
Unique NamemRNA_609
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length975
Alignment locationscaffold_3:1522672..1523765 +

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Properties
Property NameValue
TranscriptId247132
TrackFilteredModels2
ProteinId247046
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1522672..1523765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|247046gene_609Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|247046mRNA_609-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_609CDS_609Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_609 ID=mRNA_609|Name=jgi.p|Nanoce1779_2|247046|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
TCCCATCTACTGAGGGAGGGAGGGACGGAGGGAGGAGATGAGACTCATGA
TGGGCTGATGGCTGGGTCTTAGATTTCTCTTCCATTCCAGAATGGATATA
GATATGGATATAGATTGGGAACTGTGGCACGTGATGAACCCGAAATGGGA
AGTGAAATGATTGCGCTTAGAAGCTTATTGAGAGGTTTGGGGCGCGAACG
GTCCTTATTCTTCTACTTCTTCTTTTTCTTCTTCATCATCTTCTTCTTCT
CTTCTTTTTTCTCTTCTTCCTCTTCTTCTTTTTCTTCTTCTTCTTCCTCC
TTCTCCTCTTCTTCTTCCTCTACTTCTTCTTCTTCTCGTCCTATGTATCC
TTCTTCTATGCATCCTTCTTCTTTTTCATCGTCATCATTTTTTCTTCTTT
TTCATCTACTTTCTTTCTCTTCTCCTTCATCGTTTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTTCCTTAACCTCCTCCTTCTCTTAAATCCTCATCG
TAGGATCTTCTCGCATACACACACACCGCTCCGGATCCCAAATGCTTCTC
AAATCAACACCTCGTTCCACATCAACAACCTCCCCCCCTCCTTCAAAGCC
CTTCTTCCCACCCTAAAGCCCTCCCTCCCTACGAAAACCACCGGCCAAAG
CGCCTCCATCCTTCCTGCAGATGGTCTCCGTGGTACTGACCAACGCCCTC
CCACCACCGCATCACCGCACATCCCGCCTTCCCACCCTCTTTGCCTCCCC
TCCCTTTCTGCCTCTTCTTGTACGCGTGGCGCTGACGCGCCTCCGGAGAA
GAAGGTAAAGTCGCCTCGCCTTCCTTCTCTCCCTCCCGCCCATTCTGCGA
GTCCGAGGTAGGGGGGGAGGTGGCGGGGGAGGAAGGGCTTCGGGACTGAA
GCAGTCCTCCGCCGGTGAAGCCGAGCGCCTCGAGAAGGTCGGTAATCTCG
CTCAGGCTCTTGGCACTCATCTCTT
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protein sequence of jgi.p|Nanoce1779_2|247046

>mRNA_609-protein ID=mRNA_609-protein|Name=jgi.p|Nanoce1779_2|247046|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MGSEMIALRSLLRGLGRERSLFFYFFFFFFIIFFFSSFFSSSSSSFSSSS
SSFSSSSSSTSSSSRPMYPSSMHPSSFSSSSFFLLFHLLSFSSPSSFSSS
SSSSSSSFLNLLLLLNPHRRIFSHTHTPLRIPNASQINTSFHINNLPPSF
KALLPTLKPSLPTKTTGQSASILPADGLRGTDQRPPTTASPHIPPSHPLC
LPSLSASSCTRGADAPPEKKVKSPRLPSLPPAHSASPR*
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mRNA from alignment at scaffold_3:1522672..1523765+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_609 ID=mRNA_609|Name=jgi.p|Nanoce1779_2|247046|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp|location=Sequence derived from alignment at scaffold_3:1522672..1523765+ (Nannochloropsis oceanica)
TCCCATCTACTGAGGGAGGGAGGGACGGAGGGAGGAGATGAGACTCATGA
TGGGCTGATGGCTGGGTCTTAGATTTCTCTTCCATTCCAGAATGGATATA
GATATGGATATAGATTGGGAACTGTGGCACGTGATGAACCCGAAATGGGA
AGTGAAATGATTGCGCTTAGAAGCTTATTGAGAGGTTTGGGGCGCGAACG
GTCCTTATTCTTCTACTTCTTCTTTTTCTTCTTCATCATCTTCTTCTTCT
CTTCTTTTTTCTCTTCTTCCTCTTCTTCTTTTTCTTCTTCTTCTTCCTCC
TTCTCCTCTTCTTCTTCCTCTACTTCTTCTTCTTCTCGTCCTATGTATCC
TTCTTCTATGCATCCTTCTTCTTTTTCATCGTCATCATTTTTTCTTCTTT
TTCATCTACTTTCTTTCTCTTCTCCTTCATCGTTTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTTCCCCCGTAGGGTCTTTCCTCACAACTCCCTTCT
CGTCAGGCTCGTCGTCCCTCCCTCTCTCGAGGACCCTCATCCCCCAACGC
CACAAAACGGCAGAAATCTTTGCTTCCTCCTCCTTCTCTTAACCTCCTCC
TTCTCTTAAATCCTCATCGTAGGATCTTCTCGCATACACACACACCGCTC
CGGATCCCAAATGCTTCTCAAATCAACACCTCGTTCCACATCAACAACCT
CCCCCCCTCCTTCAAAGCCCTTCTTCCCACCCTAAAGCCCTCCCTCCCTA
CGAAAACCACCGGCCAAAGCGCCTCCATCCTTCCTGCAGATGGTCTCCGT
GGTACTGACCAACGCCCTCCCACCACCGCATCACCGCACATCCCGCCTTC
CCACCCTCTTTGCCTCCCCTCCCTTTCTGCCTCTTCTTGTACGCGTGGCG
CTGACGCGCCTCCGGAGAAGAAGGTAAAGTCGCCTCGCCTTCCTTCTCTC
CCTCCCGCCCATTCTGCGAGTCCGAGGTAGGGGGGGAGGTGGCGGGGGAG
GAAGGGCTTCGGGACTGAAGCAGTCCTCCGCCGGTGAAGCCGAGCGCCTC
GAGAAGGTCGGTAATCTCGCTCAGGCTCTTGGCACTCATCTCTT
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Coding sequence (CDS) from alignment at scaffold_3:1522672..1523765+

>mRNA_609 ID=mRNA_609|Name=jgi.p|Nanoce1779_2|247046|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_3:1522672..1523765+ (Nannochloropsis oceanica)
ATGGGAAGTGAAATGATTGCGCTTAGAAGCTTATTGAGAGGTTTGGGGCG
CGAACGGTCCTTATTCTTCTACTTCTTCTTTTTCTTCTTCATCATCTTCT
TCTTCTCTTCTTTTTTCTCTTCTTCCTCTTCTTCTTTTTCTTCTTCTTCT
TCCTCCTTCTCCTCTTCTTCTTCCTCTACTTCTTCTTCTTCTCGTCCTAT
GTATCCTTCTTCTATGCATCCTTCTTCTTTTTCATCGTCATCATTTTTTC
TTCTTTTTCATCTACTTTCTTTCTCTTCTCCTTCATCGTTTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTTCCTTAACCTCCTCCTTCTCTTAAATCC
TCATCGTAGGATCTTCTCGCATACACACACACCGCTCCGGATCCCAAATG
CTTCTCAAATCAACACCTCGTTCCACATCAACAACCTCCCCCCCTCCTTC
AAAGCCCTTCTTCCCACCCTAAAGCCCTCCCTCCCTACGAAAACCACCGG
CCAAAGCGCCTCCATCCTTCCTGCAGATGGTCTCCGTGGTACTGACCAAC
GCCCTCCCACCACCGCATCACCGCACATCCCGCCTTCCCACCCTCTTTGC
CTCCCCTCCCTTTCTGCCTCTTCTTGTACGCGTGGCGCTGACGCGCCTCC
GGAGAAGAAGGTAAAGTCGCCTCGCCTTCCTTCTCTCCCTCCCGCCCATT
CTGCGAGTCCGAGGTAGATGGGAAGTGAAATGATTGCGCTTAGAAGCTTA
TTGAGAGGTTTGGGGCGCGAACGGTCCTTATTCTTCTACTTCTTCTTTTT
CTTCTTCATCATCTTCTTCTTCTCTTCTTTTTTCTCTTCTTCCTCTTCTT
CTTTTTCTTCTTCTTCTTCCTCCTTCTCCTCTTCTTCTTCCTCTACTTCT
TCTTCTTCTCGTCCTATGTATCCTTCTTCTATGCATCCTTCTTCTTTTTC
ATCGTCATCATTTTTTCTTCTTTTTCATCTACTTTCTTTCTCTTCTCCTT
CATCGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCCTTAACCTC
CTCCTTCTCTTAAATCCTCATCGTAGGATCTTCTCGCATACACACACACC
GCTCCGGATCCCAAATGCTTCTCAAATCAACACCTCGTTCCACATCAACA
ACCTCCCCCCCTCCTTCAAAGCCCTTCTTCCCACCCTAAAGCCCTCCCTC
CCTACGAAAACCACCGGCCAAAGCGCCTCCATCCTTCCTGCAGATGGTCT
CCGTGGTACTGACCAACGCCCTCCCACCACCGCATCACCGCACATCCCGC
CTTCCCACCCTCTTTGCCTCCCCTCCCTTTCTGCCTCTTCTTGTACGCGT
GGCGCTGACGCGCCTCCGGAGAAGAAGGTAAAGTCGCCTCGCCTTCCTTC
TCTCCCTCCCGCCCATTCTGCGAGTCCGAGGTAG
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Synonyms
Publications