jgi.p|Nanoce1779_2|593713, mRNA_6089 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593713
Unique Name	mRNA_6089
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1143
Alignment location	scaffold_14:490673..492231 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593799
Track	FilteredModels2
ProteinId	593713

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:490673..492231 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593713	gene_6089	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593713	mRNA_6089-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6089	CDS_6089	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:490673..492231-
coding sequence from alignment at scaffold_14:490673..492231-

mRNA sequence

>mRNA_6089 ID=mRNA_6089|Name=jgi.p|Nanoce1779_2|593713|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
ACAGGCATGCGTCGCGCGTCACCGCCTTACATTGCCGTGCTTCTTCTCCT
TGTTATTGCCATGTCTGCCTACAGTCTCACAAGACCCACAGTCACAAAAT
TCCTGGGCTTTGTGCGCGCTTTCTCGTCCTCTGCTTCTCATATCGTCGTG
TCTCTGTCGCAGCAGCGGCAGCAGCAGTATCAGCAGCAGCGGCAGCAGCA
GCATTCGAACAGTAGAAAGCGAGCCCCAGTCTCATCTTCACAGCGAACCG
CCGCCTTTTCCACCTCTTCTTTTTCCTCTTTTCCGACAAAAGAGATCTTC
GAAATTCCCCCTTTCGAGCCAACGCCCGCTACAGCCAAGGACTTAGCATG
CATCGAAGACCGGCAGCTCTTGCACCCCATCACCTGTGCGGGCGGACCTC
GACAATTGTGCTCGCATGGCTTCCCGCAAGCCTTTGTTTTTCACCCATCT
AAGACAACATTAAATTCGGGCATGTTTCGATTGTGCTGCCCGTTGTTGGT
CAAGGCGGTGGATGAGTACGAGGCGAAGGGTGCCCTCCGTGAGTGGAACA
AGAAACTCGAAAACTCTCCAGAAATGCAGAGAGAGTTCCGGCGGGTCAAT
GCACGACATAGTGCCATTCGCAGGAGTTTCGTGGAACCTGAGCATCTAGC
CCCTTACCTTGAGAAGATGGGAAAAGAGGGGGTGGAGCAAATATTGGCGA
GTGGTATTGCAGGCGTCTCTCCGGAGAAGACGGAAGACTTGAAGTGCTTG
CATGCTCATTTGGCTGATTACTTATGTACACACGACAACTTTATCGGTAA
AGAAATCTACGAATACCTCGAACGCACCCGCAATGTACCCGTTACAGGCA
GCTCGACCTGCTGGCAGCAGTGTGATTCCTCCTTCGAGCGGACGGAGGAC
TCCTGGTGGTACACGCCTATTAAAAATAAACAGAAGCTCCGAAGCAAGTA
CCACAGACGAACGGCTCGCAAGCAGGAGCTGAAAGGGAAGGAGGGAGAGG
CAGAGAGGGAGGGAGTAGAGGAGAAAGGGGAGAAGAAAAGGGAGGAGCGA
GGATGGGAGGGACAGGAGTGGGATGAACGGCAAAGAAGGCCGTAGACAAG
ACGGTGAGAATGAGAATGAAGCAAGCGGTGCGCTCATGCCATG

protein sequence of jgi.p|Nanoce1779_2|593713

>mRNA_6089-protein ID=mRNA_6089-protein|Name=jgi.p|Nanoce1779_2|593713|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MRRASPPYIAVLLLLVIAMSAYSLTRPTVTKFLGFVRAFSSSASHIVVSL
SQQRQQQYQQQRQQQHSNSRKRAPVSSSQRTAAFSTSSFSSFPTKEIFEI
PPFEPTPATAKDLACIEDRQLLHPITCAGGPRQLCSHGFPQAFVFHPSKT
TLNSGMFRLCCPLLVKAVDEYEAKGALREWNKKLENSPEMQREFRRVNAR
HSAIRRSFVEPEHLAPYLEKMGKEGVEQILASGIAGVSPEKTEDLKCLHA
HLADYLCTHDNFIGKEIYEYLERTRNVPVTGSSTCWQQCDSSFERTEDSW
WYTPIKNKQKLRSKYHRRTARKQELKGKEGEAEREGVEEKGEKKREERGW
EGQEWDERQRRP*

mRNA from alignment at scaffold_14:490673..492231-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6089 ID=mRNA_6089|Name=jgi.p|Nanoce1779_2|593713|organism=Nannochloropsis oceanica|type=mRNA|length=1559bp|location=Sequence derived from alignment at scaffold_14:490673..492231- (Nannochloropsis oceanica)
ACAGGCATGCGTCGCGCGTCACCGCCTTACATTGCCGTGCTTCTTCTCCT
TGTTATTGCCATGTCTGCCTACAGTAAGTTAAATTCTATCATACACCCCC
AACCACACACCTACACCCACACCATTCCCTCCCTCCTTGCCTTGCCATTA
GGTCTCACAAGACCCACAGTCACAAAATTCCTGGGCTTTGTGCGCGCTTT
CTCGTCCTCTGCTTCTCATATCGTCGTGTCTCTGTCGCAGCAGCGGCAGC
AGCAGTATCAGCAGCAGCGGCAGCAGCAGCATTCGAACAGTAGAAAGCGA
GCCCCAGTCTCATCTTCACAGCGAACCGCCGCCTTTTCCACCTCTTCTTT
TTCCTCTTTTCCGACAAAAGAGATCTTCGAAATTCCCCCTTTCGAGCCAA
CGCCCGCTACAGCCAAGGACTTAGCATGCATCGAAGACCGGCAGCTCTTG
CACCCCATCACCTGTGCGGGCGGACCTCGACAATTGTGCTCGCATGGCTT
CCCGCAAGCCTTTGTTTTTCACCCATCTAAGACAACATTAAATTCGGGCA
TGTTTCGATTGTGCTGCCCGTTGTTGGTCAAGGCGGTGGATGAGTACGAG
GCGAAGGGTATGTGCGGAGAGCGTGTGGTGGGCTTGTCAAAGAGTGCTAA
CATCTTCTCGTGTTTGCTTTAGGCGTCAACCATCTACCCTTTTGTCCGTC
TATCCCTAACAGAGCTGTAGATTTAACCAGCACTATATATCCTCTATGTG
TTGTCGCAGGTGCCCTCCGTGAGTGGAACAAGAAACTCGAAAACTCTCCA
GAAATGCAGAGAGAGTTCCGGCGGGTCAATGCACGACATAGTGCCATTCG
CAGGAGTTTCGTGGAACCTGAGCATCTAGCCCCTTACCTTGAGAAGATGG
GAAAAGAGGGGGTGGAGCAAATATTGGCGAGTGGTATTGCAGGCGTCTCT
CCGGAGAAGACGGAAGACTTGAAGTGCTTGCATGCTCATTTGGCTGATTA
CTTATGTACACGTGAGTCCCTCCCTCCATGCTGTCTCTCACTCGTATTCA
TTCTCCTCAATTTGTCCCCTTTTAATCGTCTGTTGGTTTTTCCCCTTCGG
TTCCATACTTTCTCTTTTTTTCACACCCGCTTTAGCGACCACCCAACCCT
CCCTCCCTCCTTCCCTTCCTCCCTCCCGTATTTCCTTCATCCATCAGACG
ACAACTTTATCGGTAAAGAAATCTACGAATACCTCGAACGCACCCGCAAT
GTACCCGTTACAGGCAGCTCGACCTGCTGGCAGCAGTGTGATTCCTCCTT
CGAGCGGACGGAGGACTCCTGGTGGTACACGCCTATTAAAAATAAACAGA
AGCTCCGAAGCAAGTACCACAGACGAACGGCTCGCAAGCAGGAGCTGAAA
GGGAAGGAGGGAGAGGCAGAGAGGGAGGGAGTAGAGGAGAAAGGGGAGAA
GAAAAGGGAGGAGCGAGGATGGGAGGGACAGGAGTGGGATGAACGGCAAA
GAAGGCCGTAGACAAGACGGTGAGAATGAGAATGAAGCAAGCGGTGCGCT
CATGCCATG

Coding sequence (CDS) from alignment at scaffold_14:490673..492231-

>mRNA_6089 ID=mRNA_6089|Name=jgi.p|Nanoce1779_2|593713|organism=Nannochloropsis oceanica|type=CDS|length=4356bp|location=Sequence derived from alignment at scaffold_14:490673..492231- (Nannochloropsis oceanica)
ACGACAACTTTATCGGTAAAGAAATCTACGAATACCTCGAACGCACCCGC
AATGTACCCGTTACAGGCAGCTCGACCTGCTGGCAGCAGTGTGATTCCTC
CTTCGAGCGGACGGAGGACTCCTGGTGGTACACGCCTATTAAAAATAAAC
AGAAGCTCCGAAGCAAGTACCACAGACGAACGGCTCGCAAGCAGGAGCTG
AAAGGGAAGGAGGGAGAGGCAGAGAGGGAGGGAGTAGAGGAGAAAGGGGA
GAAGAAAAGGGAGGAGCGAGGATGGGAGGGACAGGAGTGGGATGAACGGC
AAAGAAGGCCGTAGGTGCCCTCCGTGAGTGGAACAAGAAACTCGAAAACT
CTCCAGAAATGCAGAGAGAGTTCCGGCGGGTCAATGCACGACATAGTGCC
ATTCGCAGGAGTTTCGTGGAACCTGAGCATCTAGCCCCTTACCTTGAGAA
GATGGGAAAAGAGGGGGTGGAGCAAATATTGGCGAGTGGTATTGCAGGCG
TCTCTCCGGAGAAGACGGAAGACTTGAAGTGCTTGCATGCTCATTTGGCT
GATTACTTATGTACACGTCTCACAAGACCCACAGTCACAAAATTCCTGGG
CTTTGTGCGCGCTTTCTCGTCCTCTGCTTCTCATATCGTCGTGTCTCTGT
CGCAGCAGCGGCAGCAGCAGTATCAGCAGCAGCGGCAGCAGCAGCATTCG
AACAGTAGAAAGCGAGCCCCAGTCTCATCTTCACAGCGAACCGCCGCCTT
TTCCACCTCTTCTTTTTCCTCTTTTCCGACAAAAGAGATCTTCGAAATTC
CCCCTTTCGAGCCAACGCCCGCTACAGCCAAGGACTTAGCATGCATCGAA
GACCGGCAGCTCTTGCACCCCATCACCTGTGCGGGCGGACCTCGACAATT
GTGCTCGCATGGCTTCCCGCAAGCCTTTGTTTTTCACCCATCTAAGACAA
CATTAAATTCGGGCATGTTTCGATTGTGCTGCCCGTTGTTGGTCAAGGCG
GTGGATGAGTACGAGGCGAAGGATGCGTCGCGCGTCACCGCCTTACATTG
CCGTGCTTCTTCTCCTTGTTATTGCCATGTCTGCCTACAACGACAACTTT
ATCGGTAAAGAAATCTACGAATACCTCGAACGCACCCGCAATGTACCCGT
TACAGGCAGCTCGACCTGCTGGCAGCAGTGTGATTCCTCCTTCGAGCGGA
CGGAGGACTCCTGGTGGTACACGCCTATTAAAAATAAACAGAAGCTCCGA
AGCAAGTACCACAGACGAACGGCTCGCAAGCAGGAGCTGAAAGGGAAGGA
GGGAGAGGCAGAGAGGGAGGGAGTAGAGGAGAAAGGGGAGAAGAAAAGGG
AGGAGCGAGGATGGGAGGGACAGGAGTGGGATGAACGGCAAAGAAGGCCG
TAGGTGCCCTCCGTGAGTGGAACAAGAAACTCGAAAACTCTCCAGAAATG
CAGAGAGAGTTCCGGCGGGTCAATGCACGACATAGTGCCATTCGCAGGAG
TTTCGTGGAACCTGAGCATCTAGCCCCTTACCTTGAGAAGATGGGAAAAG
AGGGGGTGGAGCAAATATTGGCGAGTGGTATTGCAGGCGTCTCTCCGGAG
AAGACGGAAGACTTGAAGTGCTTGCATGCTCATTTGGCTGATTACTTATG
TACACGTCTCACAAGACCCACAGTCACAAAATTCCTGGGCTTTGTGCGCG
CTTTCTCGTCCTCTGCTTCTCATATCGTCGTGTCTCTGTCGCAGCAGCGG
CAGCAGCAGTATCAGCAGCAGCGGCAGCAGCAGCATTCGAACAGTAGAAA
GCGAGCCCCAGTCTCATCTTCACAGCGAACCGCCGCCTTTTCCACCTCTT
CTTTTTCCTCTTTTCCGACAAAAGAGATCTTCGAAATTCCCCCTTTCGAG
CCAACGCCCGCTACAGCCAAGGACTTAGCATGCATCGAAGACCGGCAGCT
CTTGCACCCCATCACCTGTGCGGGCGGACCTCGACAATTGTGCTCGCATG
GCTTCCCGCAAGCCTTTGTTTTTCACCCATCTAAGACAACATTAAATTCG
GGCATGTTTCGATTGTGCTGCCCGTTGTTGGTCAAGGCGGTGGATGAGTA
CGAGGCGAAGGATGCGTCGCGCGTCACCGCCTTACATTGCCGTGCTTCTT
CTCCTTGTTATTGCCATGTCTGCCTACAACGACAACTTTATCGGTAAAGA
AATCTACGAATACCTCGAACGCACCCGCAATGTACCCGTTACAGGCAGCT
CGACCTGCTGGCAGCAGTGTGATTCCTCCTTCGAGCGGACGGAGGACTCC
TGGTGGTACACGCCTATTAAAAATAAACAGAAGCTCCGAAGCAAGTACCA
CAGACGAACGGCTCGCAAGCAGGAGCTGAAAGGGAAGGAGGGAGAGGCAG
AGAGGGAGGGAGTAGAGGAGAAAGGGGAGAAGAAAAGGGAGGAGCGAGGA
TGGGAGGGACAGGAGTGGGATGAACGGCAAAGAAGGCCGTAGGTGCCCTC
CGTGAGTGGAACAAGAAACTCGAAAACTCTCCAGAAATGCAGAGAGAGTT
CCGGCGGGTCAATGCACGACATAGTGCCATTCGCAGGAGTTTCGTGGAAC
CTGAGCATCTAGCCCCTTACCTTGAGAAGATGGGAAAAGAGGGGGTGGAG
CAAATATTGGCGAGTGGTATTGCAGGCGTCTCTCCGGAGAAGACGGAAGA
CTTGAAGTGCTTGCATGCTCATTTGGCTGATTACTTATGTACACGTCTCA
CAAGACCCACAGTCACAAAATTCCTGGGCTTTGTGCGCGCTTTCTCGTCC
TCTGCTTCTCATATCGTCGTGTCTCTGTCGCAGCAGCGGCAGCAGCAGTA
TCAGCAGCAGCGGCAGCAGCAGCATTCGAACAGTAGAAAGCGAGCCCCAG
TCTCATCTTCACAGCGAACCGCCGCCTTTTCCACCTCTTCTTTTTCCTCT
TTTCCGACAAAAGAGATCTTCGAAATTCCCCCTTTCGAGCCAACGCCCGC
TACAGCCAAGGACTTAGCATGCATCGAAGACCGGCAGCTCTTGCACCCCA
TCACCTGTGCGGGCGGACCTCGACAATTGTGCTCGCATGGCTTCCCGCAA
GCCTTTGTTTTTCACCCATCTAAGACAACATTAAATTCGGGCATGTTTCG
ATTGTGCTGCCCGTTGTTGGTCAAGGCGGTGGATGAGTACGAGGCGAAGG
ATGCGTCGCGCGTCACCGCCTTACATTGCCGTGCTTCTTCTCCTTGTTAT
TGCCATGTCTGCCTACAACGACAACTTTATCGGTAAAGAAATCTACGAAT
ACCTCGAACGCACCCGCAATGTACCCGTTACAGGCAGCTCGACCTGCTGG
CAGCAGTGTGATTCCTCCTTCGAGCGGACGGAGGACTCCTGGTGGTACAC
GCCTATTAAAAATAAACAGAAGCTCCGAAGCAAGTACCACAGACGAACGG
CTCGCAAGCAGGAGCTGAAAGGGAAGGAGGGAGAGGCAGAGAGGGAGGGA
GTAGAGGAGAAAGGGGAGAAGAAAAGGGAGGAGCGAGGATGGGAGGGACA
GGAGTGGGATGAACGGCAAAGAAGGCCGTAGGTGCCCTCCGTGAGTGGAA
CAAGAAACTCGAAAACTCTCCAGAAATGCAGAGAGAGTTCCGGCGGGTCA
ATGCACGACATAGTGCCATTCGCAGGAGTTTCGTGGAACCTGAGCATCTA
GCCCCTTACCTTGAGAAGATGGGAAAAGAGGGGGTGGAGCAAATATTGGC
GAGTGGTATTGCAGGCGTCTCTCCGGAGAAGACGGAAGACTTGAAGTGCT
TGCATGCTCATTTGGCTGATTACTTATGTACACGTCTCACAAGACCCACA
GTCACAAAATTCCTGGGCTTTGTGCGCGCTTTCTCGTCCTCTGCTTCTCA
TATCGTCGTGTCTCTGTCGCAGCAGCGGCAGCAGCAGTATCAGCAGCAGC
GGCAGCAGCAGCATTCGAACAGTAGAAAGCGAGCCCCAGTCTCATCTTCA
CAGCGAACCGCCGCCTTTTCCACCTCTTCTTTTTCCTCTTTTCCGACAAA
AGAGATCTTCGAAATTCCCCCTTTCGAGCCAACGCCCGCTACAGCCAAGG
ACTTAGCATGCATCGAAGACCGGCAGCTCTTGCACCCCATCACCTGTGCG
GGCGGACCTCGACAATTGTGCTCGCATGGCTTCCCGCAAGCCTTTGTTTT
TCACCCATCTAAGACAACATTAAATTCGGGCATGTTTCGATTGTGCTGCC
CGTTGTTGGTCAAGGCGGTGGATGAGTACGAGGCGAAGGATGCGTCGCGC
GTCACCGCCTTACATTGCCGTGCTTCTTCTCCTTGTTATTGCCATGTCTG
CCTACA

Synonyms

Publications