jgi.p|Nanoce1779_2|593709, mRNA_6088 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593709
Unique NamemRNA_6088
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1532
Alignment locationscaffold_14:489129..490660 -

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Properties
Property NameValue
TranscriptId593795
TrackFilteredModels2
ProteinId593709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:489129..490660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593709gene_6088Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593709mRNA_6088-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6088CDS_6088Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6088 ID=mRNA_6088|Name=jgi.p|Nanoce1779_2|593709|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp
CCCACATTGTCGTCTTGGCCGTCCTTTTTTCTTTTTCTTTTTCCCTGCCA
TTAGTAAAGTGGTCTGTCTTGTCACTGCTCACTGTAAGTCGGATTGTTAC
TGTCTCTTTCGTGTCTTTTTCCGACCGTTTTTTGGCCGTTGGATGCATAT
TTGAAGGTCTTTGCTTTCGCCCCCTCTCTCCAATTTCTCTCTTTCCCCTC
CTTGCAGTATCAATACCCTTTTTGCTACTTCTATTTCTTATTTTTGTTGT
CGTCGTTGTTGATTTGTGTCACCGTTGCTCTCCTGCCTGCTCTGTCCATT
CGTTGTTTCGGCCATCTTTCACTTTTGTGCGATTTGGTATGTGTATCTAT
CGATGCTAGGGACGAGGCTCGAATTTGCTTCATCCTTCTATGGTGCGGTG
AGTTTTGTCGCCCCCTTCTACCCCCTTCTTTTCCCCCTCATCTTGCATGT
GTGCGTAGTTGATTGAAAGTCTGCCGTAAAATATCTATTTTACGGTATGT
GCGTATGCGTGTGTGTGTCAGTAATTCCTCTTCTTCTTGTTCTACTTCGC
CCCCTACATATTCTTCCGTTTATGGTTGTGCACTTTGGCCTCGAAAAATT
GTCTAAGCCCATGATCATTCATCATCATTGTCAATGTCGTCTTTCGTCCT
TGCTCACACACTTGGACACTAGTGCTCGTAGTGCTCCCTCAGTGTATTTT
CTGTCAATTTGCAACATCAATATCCTTCCTCGTCAACAATAAACTTTACT
CCCTAGTCGCGTCCCTCTTCTGGATAGACTGATGCGATTCCCTCGTATTC
GTCAAGCACATCGCGCGTCCTCCCTGTTTCTTCTATCGTCGTTTTCAAGT
TTCTCTATCGCATTTCGTATAACTCGTAATTTGCCTCGCTGTCAACTAGT
ATTGGCCTAATACATTTATCCTTCCTCCATCCCTCTCACCAACTAGTAAC
TAGTATTGGCCTATAACATTAACCCTTCCTCCATCCCTCTTACCCTACCA
ACGTCCCTCCCTAGCGTGAAGCAGACACCTTTACCATCGGCTAACCCTTT
ACCATCGGCTACTTGGTAAACACCTTCTCCTTCTCCACGTTGCCACCCGG
GGTAACGCTGCTGTTTCTCTCATTCTCCTTGACCGTGCTGCTCTGTTTCA
CAGAGACCACAGGGCTGTTGGTGGTGGTGCAAGCGCCAACATCCTGGTTC
TTGGCCCCCCTCTGGGAGGAAGAGGAAGAGGCATCAAGAAGGGTGGATGA
GGCGACCTTGTCACTCTCATCGTCTTCCTCATCGCTGCTATCAGGTTGAG
AAGTAGTCGGGGAAGAGGCCGCAGACAATGAAGCGGTAGAGGACGAAGAG
GAGGAGGAGGGCGTCACAGGAGCACTTGTCTTGCCGCTGGTGGTACTGCT
GCTGTTCAACTCTTTCTTAACCGCCTTTTCAGTCCGCTGCCCCTTCGTCC
CCTCTCCTTTTTTGCCTTTGTTGCTGCTTTCGCTGCCACCCTCCTCTGGA
GCAGGAACCACCACCGCCGTCAATTGCTTTTT
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protein sequence of jgi.p|Nanoce1779_2|593709

>mRNA_6088-protein ID=mRNA_6088-protein|Name=jgi.p|Nanoce1779_2|593709|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MCVCVCVSVIPLLLVLLRPLHILPFMVVHFGLEKLSKPMIIHHHCQCRLS
SLLTHLDTSARSAPSVYFLSICNINILPRQQ*
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mRNA from alignment at scaffold_14:489129..490660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6088 ID=mRNA_6088|Name=jgi.p|Nanoce1779_2|593709|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at scaffold_14:489129..490660- (Nannochloropsis oceanica)
CCCACATTGTCGTCTTGGCCGTCCTTTTTTCTTTTTCTTTTTCCCTGCCA
TTAGTAAAGTGGTCTGTCTTGTCACTGCTCACTGTAAGTCGGATTGTTAC
TGTCTCTTTCGTGTCTTTTTCCGACCGTTTTTTGGCCGTTGGATGCATAT
TTGAAGGTCTTTGCTTTCGCCCCCTCTCTCCAATTTCTCTCTTTCCCCTC
CTTGCAGTATCAATACCCTTTTTGCTACTTCTATTTCTTATTTTTGTTGT
CGTCGTTGTTGATTTGTGTCACCGTTGCTCTCCTGCCTGCTCTGTCCATT
CGTTGTTTCGGCCATCTTTCACTTTTGTGCGATTTGGTATGTGTATCTAT
CGATGCTAGGGACGAGGCTCGAATTTGCTTCATCCTTCTATGGTGCGGTG
AGTTTTGTCGCCCCCTTCTACCCCCTTCTTTTCCCCCTCATCTTGCATGT
GTGCGTAGTTGATTGAAAGTCTGCCGTAAAATATCTATTTTACGGTATGT
GCGTATGCGTGTGTGTGTCAGTAATTCCTCTTCTTCTTGTTCTACTTCGC
CCCCTACATATTCTTCCGTTTATGGTTGTGCACTTTGGCCTCGAAAAATT
GTCTAAGCCCATGATCATTCATCATCATTGTCAATGTCGTCTTTCGTCCT
TGCTCACACACTTGGACACTAGTGCTCGTAGTGCTCCCTCAGTGTATTTT
CTGTCAATTTGCAACATCAATATCCTTCCTCGTCAACAATAAACTTTACT
CCCTAGTCGCGTCCCTCTTCTGGATAGACTGATGCGATTCCCTCGTATTC
GTCAAGCACATCGCGCGTCCTCCCTGTTTCTTCTATCGTCGTTTTCAAGT
TTCTCTATCGCATTTCGTATAACTCGTAATTTGCCTCGCTGTCAACTAGT
ATTGGCCTAATACATTTATCCTTCCTCCATCCCTCTCACCAACTAGTAAC
TAGTATTGGCCTATAACATTAACCCTTCCTCCATCCCTCTTACCCTACCA
ACGTCCCTCCCTAGCGTGAAGCAGACACCTTTACCATCGGCTAACCCTTT
ACCATCGGCTACTTGGTAAACACCTTCTCCTTCTCCACGTTGCCACCCGG
GGTAACGCTGCTGTTTCTCTCATTCTCCTTGACCGTGCTGCTCTGTTTCA
CAGAGACCACAGGGCTGTTGGTGGTGGTGCAAGCGCCAACATCCTGGTTC
TTGGCCCCCCTCTGGGAGGAAGAGGAAGAGGCATCAAGAAGGGTGGATGA
GGCGACCTTGTCACTCTCATCGTCTTCCTCATCGCTGCTATCAGGTTGAG
AAGTAGTCGGGGAAGAGGCCGCAGACAATGAAGCGGTAGAGGACGAAGAG
GAGGAGGAGGGCGTCACAGGAGCACTTGTCTTGCCGCTGGTGGTACTGCT
GCTGTTCAACTCTTTCTTAACCGCCTTTTCAGTCCGCTGCCCCTTCGTCC
CCTCTCCTTTTTTGCCTTTGTTGCTGCTTTCGCTGCCACCCTCCTCTGGA
GCAGGAACCACCACCGCCGTCAATTGCTTTTT
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Coding sequence (CDS) from alignment at scaffold_14:489129..490660-

>mRNA_6088 ID=mRNA_6088|Name=jgi.p|Nanoce1779_2|593709|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_14:489129..490660- (Nannochloropsis oceanica)
ATGTGCGTATGCGTGTGTGTGTCAGTAATTCCTCTTCTTCTTGTTCTACT
TCGCCCCCTACATATTCTTCCGTTTATGGTTGTGCACTTTGGCCTCGAAA
AATTGTCTAAGCCCATGATCATTCATCATCATTGTCAATGTCGTCTTTCG
TCCTTGCTCACACACTTGGACACTAGTGCTCGTAGTGCTCCCTCAGTGTA
TTTTCTGTCAATTTGCAACATCAATATCCTTCCTCGTCAACAATAA
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Synonyms
Publications