jgi.p|Nanoce1779_2|529834, mRNA_6087 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529834
Unique NamemRNA_6087
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length285
Alignment locationscaffold_14:488706..488990 +

Link to JBrowse

Properties
Property NameValue
TranscriptId529920
TrackFilteredModels2
ProteinId529834
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:488706..488990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529834gene_6087Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529834mRNA_6087-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6087CDS_6087Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6087 ID=mRNA_6087|Name=jgi.p|Nanoce1779_2|529834|organism=Nannochloropsis oceanica|type=mRNA|length=285bp
ATGAGCATACAAGAAGCGAGGGAGTACCTAGCTTCCATGGCGGTGCAGCA
GATCGAATATTATTTCTCGGTGGACAACCTCTGCAGGGATACGTACCTCA
GGTCGCATTTGGACGAGGAGGGCTGGGTCCCTTTGGCATTGATTTGCAAT
TTTCCGACGGTCGCGAGTTTTGCAGCGGAGTACGGAGAGATTGTCAAGAC
GCTGCAAGATTCTTCCTCGGTATTGGACTACGATGAGGAGAACGAGACCG
TTCGTCTCAAGGAAAAGGCCACGGCATGGCTGGTC
back to top

protein sequence of jgi.p|Nanoce1779_2|529834

>mRNA_6087-protein ID=mRNA_6087-protein|Name=jgi.p|Nanoce1779_2|529834|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MSIQEAREYLASMAVQQIEYYFSVDNLCRDTYLRSHLDEEGWVPLALICN
FPTVASFAAEYGEIVKTLQDSSSVLDYDEENETVRLKEKATAWLV
back to top

mRNA from alignment at scaffold_14:488706..488990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6087 ID=mRNA_6087|Name=jgi.p|Nanoce1779_2|529834|organism=Nannochloropsis oceanica|type=mRNA|length=285bp|location=Sequence derived from alignment at scaffold_14:488706..488990+ (Nannochloropsis oceanica)
ATGAGCATACAAGAAGCGAGGGAGTACCTAGCTTCCATGGCGGTGCAGCA
GATCGAATATTATTTCTCGGTGGACAACCTCTGCAGGGATACGTACCTCA
GGTCGCATTTGGACGAGGAGGGCTGGGTCCCTTTGGCATTGATTTGCAAT
TTTCCGACGGTCGCGAGTTTTGCAGCGGAGTACGGAGAGATTGTCAAGAC
GCTGCAAGATTCTTCCTCGGTATTGGACTACGATGAGGAGAACGAGACCG
TTCGTCTCAAGGAAAAGGCCACGGCATGGCTGGTC
back to top

Coding sequence (CDS) from alignment at scaffold_14:488706..488990+

>mRNA_6087 ID=mRNA_6087|Name=jgi.p|Nanoce1779_2|529834|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_14:488706..488990+ (Nannochloropsis oceanica)
ATGAGCATACAAGAAGCGAGGGAGTACCTAGCTTCCATGGCGGTGCAGCA
GATCGAATATTATTTCTCGGTGGACAACCTCTGCAGGGATACGTACCTCA
GGTCGCATTTGGACGAGGAGGGCTGGGTCCCTTTGGCATTGATTTGCAAT
TTTCCGACGGTCGCGAGTTTTGCAGCGGAGTACGGAGAGATTGTCAAGAC
GCTGCAAGATTCTTCCTCGGTATTGGACTACGATGAGGAGAACGAGACCG
TTCGTCTCAAGGAAAAGGCCACGGCATGGCTGGTC
back to top
Synonyms
Publications