jgi.p|Nanoce1779_2|593698, mRNA_6085 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593698
Unique NamemRNA_6085
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length695
Alignment locationscaffold_14:482198..482892 +

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Properties
Property NameValue
TranscriptId593784
TrackFilteredModels2
ProteinId593698
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:482198..482892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593698gene_6085Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593698mRNA_6085-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6085CDS_6085Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6085 ID=mRNA_6085|Name=jgi.p|Nanoce1779_2|593698|organism=Nannochloropsis oceanica|type=mRNA|length=695bp
GGGCATGCTTCTCATGGCTTCCGATTCGACGCACAGCACAATATCGACCT
ACTCGTCTTCCCTTTTCATTTGTTGATGAAGGAACTGGCTGTGATTGTTT
TTCTTTTCGCGCATGTGCACGCATGTGGCTTCACTCCCTCGTCTTACCGT
GTGGACGTGTGCTGTTACTATTCTACCCCTTTCCTCATGGCGCATGCTTT
TCCCTCTCCTTTTTGCGCGTGTCTATCCATTCCCTTTCTCGCCCCTCTCT
TTCATCCACTCTCACCAACACCACAAATCGCGCCCACATTCCGTCTGTGA
CTCGCTAAGACTATCCACGAAATTTGACCCTTTACTCTCCTATCCTATAC
ATGTGCCTACCTACTTCCCTCCTTCTGTCCTCCCCTTTCCCTCCTTCATC
TAGTTCTCATCCTTGGTAGGTTGGAGCGCCGCATAAACATCGTACACCTA
GAAATGAAGTAAAAGATGGATAGAGGGAGGGAGGAAAGGTGGGAGGTGAG
GGAATACAGTCGCGAGTCAAGGTCTCCTCGTCCTTTTGAATATCTGGAGC
ACAGCCCATCCTCCCTCCCTCCGTCCATCCATAGATCCCACCTTCCCTCA
CCTGTGTCAAATTATCGTTCAATTCCTTGATCATTACCGCGCACTGCTGC
AATGCCACCTTTTGTTCCTCGCTTGTAGCGGTGTTTCCTCCTCCG
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protein sequence of jgi.p|Nanoce1779_2|593698

>mRNA_6085-protein ID=mRNA_6085-protein|Name=jgi.p|Nanoce1779_2|593698|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MCTHVASLPRLTVWTCAVTILPLSSWRMLFPLLFARVYPFPFSPLSFIHS
HQHHKSRPHSVCDSLRLSTKFDPLLSYPIHVPTYFPPSVLPFPSFI*
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mRNA from alignment at scaffold_14:482198..482892+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6085 ID=mRNA_6085|Name=jgi.p|Nanoce1779_2|593698|organism=Nannochloropsis oceanica|type=mRNA|length=695bp|location=Sequence derived from alignment at scaffold_14:482198..482892+ (Nannochloropsis oceanica)
GGGCATGCTTCTCATGGCTTCCGATTCGACGCACAGCACAATATCGACCT
ACTCGTCTTCCCTTTTCATTTGTTGATGAAGGAACTGGCTGTGATTGTTT
TTCTTTTCGCGCATGTGCACGCATGTGGCTTCACTCCCTCGTCTTACCGT
GTGGACGTGTGCTGTTACTATTCTACCCCTTTCCTCATGGCGCATGCTTT
TCCCTCTCCTTTTTGCGCGTGTCTATCCATTCCCTTTCTCGCCCCTCTCT
TTCATCCACTCTCACCAACACCACAAATCGCGCCCACATTCCGTCTGTGA
CTCGCTAAGACTATCCACGAAATTTGACCCTTTACTCTCCTATCCTATAC
ATGTGCCTACCTACTTCCCTCCTTCTGTCCTCCCCTTTCCCTCCTTCATC
TAGTTCTCATCCTTGGTAGGTTGGAGCGCCGCATAAACATCGTACACCTA
GAAATGAAGTAAAAGATGGATAGAGGGAGGGAGGAAAGGTGGGAGGTGAG
GGAATACAGTCGCGAGTCAAGGTCTCCTCGTCCTTTTGAATATCTGGAGC
ACAGCCCATCCTCCCTCCCTCCGTCCATCCATAGATCCCACCTTCCCTCA
CCTGTGTCAAATTATCGTTCAATTCCTTGATCATTACCGCGCACTGCTGC
AATGCCACCTTTTGTTCCTCGCTTGTAGCGGTGTTTCCTCCTCCG
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Coding sequence (CDS) from alignment at scaffold_14:482198..482892+

>mRNA_6085 ID=mRNA_6085|Name=jgi.p|Nanoce1779_2|593698|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_14:482198..482892+ (Nannochloropsis oceanica)
ATGTGCACGCATGTGGCTTCACTCCCTCGTCTTACCGTGTGGACGTGTGC
TGTTACTATTCTACCCCTTTCCTCATGGCGCATGCTTTTCCCTCTCCTTT
TTGCGCGTGTCTATCCATTCCCTTTCTCGCCCCTCTCTTTCATCCACTCT
CACCAACACCACAAATCGCGCCCACATTCCGTCTGTGACTCGCTAAGACT
ATCCACGAAATTTGACCCTTTACTCTCCTATCCTATACATGTGCCTACCT
ACTTCCCTCCTTCTGTCCTCCCCTTTCCCTCCTTCATCTAG
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Synonyms
Publications