jgi.p|Nanoce1779_2|593696, mRNA_6084 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593696
Unique Name	mRNA_6084
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2383
Alignment location	scaffold_14:479815..482197 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593782
Track	FilteredModels2
ProteinId	593696

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:479815..482197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593696	gene_6084	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593696	mRNA_6084-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6084	CDS_6084	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:479815..482197+
coding sequence from alignment at scaffold_14:479815..482197+

mRNA sequence

>mRNA_6084 ID=mRNA_6084|Name=jgi.p|Nanoce1779_2|593696|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp
AACATCAGCTAGGGGTTGTGGTAGGCGGCAAGGTGGGCCGGCAGCAGCAG
CAACAACAACAGCAGTGGAAGCAAGAGCACCGGCGTTCCAGCCGTATTTT
GACCTTTCGAGAATCGCCCGGCGAGTCACGCACGTGAGTGGGTAGAAAGG
AACGCTCCTGCCTCTTGTGTGCGGGTCGTCTCTTTCTTTCATTCATTCGT
GCCTCCCTCCCTTCTGAGCACGGTGCAAACACGGGCGGAGCAACGGCGGA
AGGCTGCAGCCAGTCCTGGAATGGCAGCAGCAGCAATGAGCGCAGTAGCT
GAAAGCAATCCACCAAGTAGGGGTGCCAGGGTCCGAAAATCCAATCAGGT
CGTCTCAGCCCCGCCTTCCTCCTCCTCTTCTTCCTCAACTGTGAATGGAC
ACCATCACCCCGCCCATAACCATGATGCCGGGACAGCTGCAGGCAGCAGT
AGAAACAGTCGGCCAAATTCCCGGATGGAAAACGGCATCTCCACTAGCAG
TGCCAACAAGAGCAACAGCAGCAGCAGCAACGGCAAGCATTATGGTACTT
CCCTTCCTCCGGCTGGTGCCTTCATCCCCTCCTCCTCCTCTCCAGTAAGC
AAGGATCACCCACACGTGTCTCATCTGACGAATGACAGGCTGTCCTGGTG
GCACTATGGGATCATGCTTGCCTTAGTTTACATCAGCTTCGCGACTTATC
CGGGGTCCGGTTTGAGTATAAGTAGTAGTGAGGGAGGGAGGGAAGGAGGG
AAAGGAAGGATGACGTTGTGGCATGTGTGGTATTTTGGATGGATCACGGC
GTTGTCGACGGGATTGGGTACATTGCCCTTTGTGGTGGTGAGCGAGATGA
ACAAGTGGTGGCTGGGCGTGAGCAATGCCTGTGCGGCGGGCATGATGCTG
GCAGCGAGCACCAGCCTTGTGTACGAAGGAATCGTGTTGGATGACAGCTC
GTATGTCCTGAGGCATGGGGCGTGCTGGATGCCGCAGAGTTTGCGGGTGT
TGCTGGGATTATTGGGGGGACTGCTCTTCATCGTCTCGACCAAGAAGTTG
TTGGATCAGCACGAAGACGTCAAGGTCGCGGGATTGGATGGCTTGGAAGC
GCGGAAGGTCCTCCTCCTTATTTTCGTGATGACCCTGCACTCCTTCACGG
AAGGGGTAGGGATTGGGGTCAGTTTCGGCGGCGATAAAGGCGCAAAGCTC
GGGGTTTTTATCTCGCTGACTCTAGCGGTGCACAACGTCCCCGAGGGCTT
GGCGGTCGCGTTGGTGCTTGTTCCGAAGGGGGTCAATAAGTGGAAGACGG
CTCTGTGGTCTATTTTTACGAGCATACCCCAGCCGTTGATGGCGGTGCCG
GCGTATTGCTTTGTGGAGAGCTTTATTCCTTTCTTGCCGGTGGGCTTGGG
GTTTGCAGCCGGCGCGATGCTGTGGGTGGCGGTGTTTGAGCTCTTGGTTG
ATGCGTTGGAAGATACGGGGTCGAGGGCAGTGACGGCGATCGTGGGCACA
CTGTCGTTCGGGGTGATGATGGCGGTACAGATGGGCTTGAAAGAAGATTA
AATTTTAAAAATAGAGGACGGCGACGGAGGCGGTTTTGAAAGATTAGAGA
TGGAGGAGGGCGTGTAGGGACGTAGATGCTTTTGTGTTGTGATGTGCTGT
GTGAGCGTGTGTGCATGTGTGGTTGACGATCAATAAAAGAACGAAAGAAG
CAGGTAGAGAGCGAGAAGAATGGAGAGAGAATAAGACATAGAAGGGCAGC
GAGGAAGACCATTACATGTGTGCGTCAGGGTGTCCTCGTTGTCGGTGCGA
GTGTGAGTGCGAGTGCACCCGGCAGAAAAAAGGATGTGGGGAAGAGAGGA
TGAGATGGAAGGTGAATAAGATTTCTGAATCAGCCAGAGACGCGAAAGGG
CGTCAGCGATAGAGAGAAGAAATTGTAAGTGTTGTGGGGCTATGGCACAG
CAACAGCAGCAGCCGCAGGAGCAGTAGCAGGAGCGGCAGCAATAGCAGCG
GCAGCAGTGGCAGTATTTACAGCAGTAGTGGCCGCGACAAAAAGCGGTAG
CTCTTGATAAAAGAAAGCGGCTGCTTGCAGCCACAAGAGGGAAAAGGAAG
GGAGGGTTTGTGGAGGAGCGCGAAGATGAAAGAGGAGGGGTGAAGATAAA
CCAACCCCCATACAAAGGGGGAACGAACGAGCCGAGGAAGAAGCGGTCAG
GGGGAGGGAGAGGGAATGATACCGGGAGGACACGAGAGGGATGGGGTAGG
AAATTGAAGGAGGACAATCTGCCGGTACCGAATTTAAGACCAAAGACTAA
AAGAAGGAATAGAAGCAGCGAAAAGGAAGAAAACAGGAAAGGGACCGATG
CAGTACACAACACGCACAGTCACAGAGCCGGTT

protein sequence of jgi.p|Nanoce1779_2|593696

>mRNA_6084-protein ID=mRNA_6084-protein|Name=jgi.p|Nanoce1779_2|593696|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MAAAAMSAVAESNPPSRGARVRKSNQVVSAPPSSSSSSSTVNGHHHPAHN
HDAGTAAGSSRNSRPNSRMENGISTSSANKSNSSSSNGKHYGTSLPPAGA
FIPSSSSPVSKDHPHVSHLTNDRLSWWHYGIMLALVYISFATYPGSGLSI
SSSEGGREGGKGRMTLWHVWYFGWITALSTGLGTLPFVVVSEMNKWWLGV
SNACAAGMMLAASTSLVYEGIVLDDSSYVLRHGACWMPQSLRVLLGLLGG
LLFIVSTKKLLDQHEDVKVAGLDGLEARKVLLLIFVMTLHSFTEGVGIGV
SFGGDKGAKLGVFISLTLAVHNVPEGLAVALVLVPKGVNKWKTALWSIFT
SIPQPLMAVPAYCFVESFIPFLPVGLGFAAGAMLWVAVFELLVDALEDTG
SRAVTAIVGTLSFGVMMAVQMGLKED*

mRNA from alignment at scaffold_14:479815..482197+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6084 ID=mRNA_6084|Name=jgi.p|Nanoce1779_2|593696|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at scaffold_14:479815..482197+ (Nannochloropsis oceanica)
AACATCAGCTAGGGGTTGTGGTAGGCGGCAAGGTGGGCCGGCAGCAGCAG
CAACAACAACAGCAGTGGAAGCAAGAGCACCGGCGTTCCAGCCGTATTTT
GACCTTTCGAGAATCGCCCGGCGAGTCACGCACGTGAGTGGGTAGAAAGG
AACGCTCCTGCCTCTTGTGTGCGGGTCGTCTCTTTCTTTCATTCATTCGT
GCCTCCCTCCCTTCTGAGCACGGTGCAAACACGGGCGGAGCAACGGCGGA
AGGCTGCAGCCAGTCCTGGAATGGCAGCAGCAGCAATGAGCGCAGTAGCT
GAAAGCAATCCACCAAGTAGGGGTGCCAGGGTCCGAAAATCCAATCAGGT
CGTCTCAGCCCCGCCTTCCTCCTCCTCTTCTTCCTCAACTGTGAATGGAC
ACCATCACCCCGCCCATAACCATGATGCCGGGACAGCTGCAGGCAGCAGT
AGAAACAGTCGGCCAAATTCCCGGATGGAAAACGGCATCTCCACTAGCAG
TGCCAACAAGAGCAACAGCAGCAGCAGCAACGGCAAGCATTATGGTACTT
CCCTTCCTCCGGCTGGTGCCTTCATCCCCTCCTCCTCCTCTCCAGTAAGC
AAGGATCACCCACACGTGTCTCATCTGACGAATGACAGGCTGTCCTGGTG
GCACTATGGGATCATGCTTGCCTTAGTTTACATCAGCTTCGCGACTTATC
CGGGGTCCGGTTTGAGTATAAGTAGTAGTGAGGGAGGGAGGGAAGGAGGG
AAAGGAAGGATGACGTTGTGGCATGTGTGGTATTTTGGATGGATCACGGC
GTTGTCGACGGGATTGGGTACATTGCCCTTTGTGGTGGTGAGCGAGATGA
ACAAGTGGTGGCTGGGCGTGAGCAATGCCTGTGCGGCGGGCATGATGCTG
GCAGCGAGCACCAGCCTTGTGTACGAAGGAATCGTGTTGGATGACAGCTC
GTATGTCCTGAGGCATGGGGCGTGCTGGATGCCGCAGAGTTTGCGGGTGT
TGCTGGGATTATTGGGGGGACTGCTCTTCATCGTCTCGACCAAGAAGTTG
TTGGATCAGCACGAAGACGTCAAGGTCGCGGGATTGGATGGCTTGGAAGC
GCGGAAGGTCCTCCTCCTTATTTTCGTGATGACCCTGCACTCCTTCACGG
AAGGGGTAGGGATTGGGGTCAGTTTCGGCGGCGATAAAGGCGCAAAGCTC
GGGGTTTTTATCTCGCTGACTCTAGCGGTGCACAACGTCCCCGAGGGCTT
GGCGGTCGCGTTGGTGCTTGTTCCGAAGGGGGTCAATAAGTGGAAGACGG
CTCTGTGGTCTATTTTTACGAGCATACCCCAGCCGTTGATGGCGGTGCCG
GCGTATTGCTTTGTGGAGAGCTTTATTCCTTTCTTGCCGGTGGGCTTGGG
GTTTGCAGCCGGCGCGATGCTGTGGGTGGCGGTGTTTGAGCTCTTGGTTG
ATGCGTTGGAAGATACGGGGTCGAGGGCAGTGACGGCGATCGTGGGCACA
CTGTCGTTCGGGGTGATGATGGCGGTACAGATGGGCTTGAAAGAAGATTA
AATTTTAAAAATAGAGGACGGCGACGGAGGCGGTTTTGAAAGATTAGAGA
TGGAGGAGGGCGTGTAGGGACGTAGATGCTTTTGTGTTGTGATGTGCTGT
GTGAGCGTGTGTGCATGTGTGGTTGACGATCAATAAAAGAACGAAAGAAG
CAGGTAGAGAGCGAGAAGAATGGAGAGAGAATAAGACATAGAAGGGCAGC
GAGGAAGACCATTACATGTGTGCGTCAGGGTGTCCTCGTTGTCGGTGCGA
GTGTGAGTGCGAGTGCACCCGGCAGAAAAAAGGATGTGGGGAAGAGAGGA
TGAGATGGAAGGTGAATAAGATTTCTGAATCAGCCAGAGACGCGAAAGGG
CGTCAGCGATAGAGAGAAGAAATTGTAAGTGTTGTGGGGCTATGGCACAG
CAACAGCAGCAGCCGCAGGAGCAGTAGCAGGAGCGGCAGCAATAGCAGCG
GCAGCAGTGGCAGTATTTACAGCAGTAGTGGCCGCGACAAAAAGCGGTAG
CTCTTGATAAAAGAAAGCGGCTGCTTGCAGCCACAAGAGGGAAAAGGAAG
GGAGGGTTTGTGGAGGAGCGCGAAGATGAAAGAGGAGGGGTGAAGATAAA
CCAACCCCCATACAAAGGGGGAACGAACGAGCCGAGGAAGAAGCGGTCAG
GGGGAGGGAGAGGGAATGATACCGGGAGGACACGAGAGGGATGGGGTAGG
AAATTGAAGGAGGACAATCTGCCGGTACCGAATTTAAGACCAAAGACTAA
AAGAAGGAATAGAAGCAGCGAAAAGGAAGAAAACAGGAAAGGGACCGATG
CAGTACACAACACGCACAGTCACAGAGCCGGTT

Coding sequence (CDS) from alignment at scaffold_14:479815..482197+

>mRNA_6084 ID=mRNA_6084|Name=jgi.p|Nanoce1779_2|593696|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at scaffold_14:479815..482197+ (Nannochloropsis oceanica)
ATGGCAGCAGCAGCAATGAGCGCAGTAGCTGAAAGCAATCCACCAAGTAG
GGGTGCCAGGGTCCGAAAATCCAATCAGGTCGTCTCAGCCCCGCCTTCCT
CCTCCTCTTCTTCCTCAACTGTGAATGGACACCATCACCCCGCCCATAAC
CATGATGCCGGGACAGCTGCAGGCAGCAGTAGAAACAGTCGGCCAAATTC
CCGGATGGAAAACGGCATCTCCACTAGCAGTGCCAACAAGAGCAACAGCA
GCAGCAGCAACGGCAAGCATTATGGTACTTCCCTTCCTCCGGCTGGTGCC
TTCATCCCCTCCTCCTCCTCTCCAGTAAGCAAGGATCACCCACACGTGTC
TCATCTGACGAATGACAGGCTGTCCTGGTGGCACTATGGGATCATGCTTG
CCTTAGTTTACATCAGCTTCGCGACTTATCCGGGGTCCGGTTTGAGTATA
AGTAGTAGTGAGGGAGGGAGGGAAGGAGGGAAAGGAAGGATGACGTTGTG
GCATGTGTGGTATTTTGGATGGATCACGGCGTTGTCGACGGGATTGGGTA
CATTGCCCTTTGTGGTGGTGAGCGAGATGAACAAGTGGTGGCTGGGCGTG
AGCAATGCCTGTGCGGCGGGCATGATGCTGGCAGCGAGCACCAGCCTTGT
GTACGAAGGAATCGTGTTGGATGACAGCTCGTATGTCCTGAGGCATGGGG
CGTGCTGGATGCCGCAGAGTTTGCGGGTGTTGCTGGGATTATTGGGGGGA
CTGCTCTTCATCGTCTCGACCAAGAAGTTGTTGGATCAGCACGAAGACGT
CAAGGTCGCGGGATTGGATGGCTTGGAAGCGCGGAAGGTCCTCCTCCTTA
TTTTCGTGATGACCCTGCACTCCTTCACGGAAGGGGTAGGGATTGGGGTC
AGTTTCGGCGGCGATAAAGGCGCAAAGCTCGGGGTTTTTATCTCGCTGAC
TCTAGCGGTGCACAACGTCCCCGAGGGCTTGGCGGTCGCGTTGGTGCTTG
TTCCGAAGGGGGTCAATAAGTGGAAGACGGCTCTGTGGTCTATTTTTACG
AGCATACCCCAGCCGTTGATGGCGGTGCCGGCGTATTGCTTTGTGGAGAG
CTTTATTCCTTTCTTGCCGGTGGGCTTGGGGTTTGCAGCCGGCGCGATGC
TGTGGGTGGCGGTGTTTGAGCTCTTGGTTGATGCGTTGGAAGATACGGGG
TCGAGGGCAGTGACGGCGATCGTGGGCACACTGTCGTTCGGGGTGATGAT
GGCGGTACAGATGGGCTTGAAAGAAGATTAA

Synonyms

Publications