jgi.p|Nanoce1779_2|556929, mRNA_6083 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556929
Unique Name	mRNA_6083
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2085
Alignment location	scaffold_14:478313..480518 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557015
Track	FilteredModels2
ProteinId	556929

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:478313..480518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556929	gene_6083	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556929	mRNA_6083-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6083	CDS_6083	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:478313..480518+
coding sequence from alignment at scaffold_14:478313..480518+

mRNA sequence

>mRNA_6083 ID=mRNA_6083|Name=jgi.p|Nanoce1779_2|556929|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp
GGGAGGGAGGGAGGGACGGGGCGAGGCAGAGGGGCTGCAGAAGCGGTTGT
GGGTGATGGTGGCGAGGCATTTGATTGAGGTCGTCAAGGTCGTGCCGAAG
GAGGCCATGCATCTGCTGGATGAGTCGAATCATGTCTTGTCCATCGAAGA
CTTATTGCCGTATTTTCCAGAGATCACTACAATCGATGCCTTCAAAGAGA
AGATATGTGAGAGCCTCTCCTCCTACTCTCAAACCATCCAAGGCCTGAAA
CAAGAGATGGAGGAGCTAGCTATGTCGACGGCTGAGATGGAAAAAGCGAT
CGCTGCGCTAAAGGGACGGCATCTCTCCTTGAGCACCACCCAGAAGTGTG
ACTTGTGCAGTGACCCGGCCCTGACCCAGCACTTTTACCTGTTTCCTTGC
CGGCATACCTTCCACGCTACGTGCCTCGCCCGCTTTATCCTCCCTTACCT
CAATCCGCTCCAACGCCGCGCCGTGCAAGCACTACAAGAACAGCTCGCCG
CAGAGATCTCAGGGGGAATGATAGGGAGGGACAAAGGGAGGATGAGTCAA
CGCAAGGCTGCGCAGGTGGAAGCGTTGCAGGGGGAGATTGATGGGTATTT
AGCCGCGGAGTGCCCGTGGTGTGGGGATGTGATGATACGGACGGTCGATG
AACCATTGGTGGGGGAAGAGGAGGAGTCGCAGATGGAGGCACGTGCGTGG
ATTATTGATTAGAAAGGAGAGTGGGAGAGGGGAATGAAGGGTTTGTACAA
AGGAGATGGTAAAAAAGGAGGCTACAAGAGGGGGCTTCAATGCGATATTG
TGTCACTTTGTTTTCTTTTGCCGTCAGCTCCCACACCTTTGTTTCATGTG
TCGCTGGAATAATGATTGCCAGATCATAGTACCAATAGGGGATACGCAAG
AACAATTGAGCACTTCTATTGGCATCTTTCCCCTCTGTGGAACACTAGGC
AACGAACGACACGCATGCGGGAGACATGATATCCAGGCAGCGATCAGTAG
CCTTTTCTTGTTGCTGTGCAAATGCCTCGCTCTCCGTCTCTCTTATCGTA
CCCGCTACACTGATGGATTCACCCCTTTCGTCAGCCACACACAACCATGC
AGGGCCCTTTCGCTGGTTTACGGGCAATGTGAACCTCGTTTGAAAGATCC
AAGCAACCCCAACCAACTTGAAGCGCTGCTGCAGATGCTGCTTGATGAGG
GGCTCCTGTGTGCTGCTGCTGCTACATGGCAACAAGCGGCAGTCATTCAA
CCCTGGGCTGCGCCTGCACCACAACGATCGCCGTTGTGTGTGTGTAGCCG
ACTCTGCGGGGCCACAGTCAGTACCCTGATTGAGAATCCAACACTAACTT
TCATTTCCCAATCCCCTCATCATCGCACATCAACATCAGCTAGGGGTTGT
GGTAGGCGGCAAGGTGGGCCGGCAGCAGCAGCAACAACAACAGCAGTGGA
AGCAAGAGCACCGGCGTTCCAGCCGTATTTTGACCTTTCGAGAATCGCCC
GGCGAGTCACGCACGTGAGTGGGTAGAAAGGAACGCTCCTGCCTCTTGTG
TGCGGGTCGTCTCTTTCTTTCATTCATTCGTGCCTCCCTCCCTTCTGAGC
ACGGTGCAAACACGGGCGGAGCAACGGCGGAAGGCTGCAGCCAGTCCTGG
AATGGCAGCAGCAGCAATGAGCGCAGTAGCTGAAAGCAATCCACCAAGTA
GGGGTGCCAGGGTCCGAAAATCCAATCAGGTCGTCTCAGCCCCGCCTTCC
TCCTCCTCTTCTTCCTCAACTGTGAATGGACACCATCACCCCGCCCATAA
CCATGATGCCGGGACAGCTGCAGGCAGCAGTAGAAACAGTCGGCCAAATT
CCCGGATGGAAAACGGCATCTCCACTAGCAGTGCCAACAAGAGCAACAGC
AGCAGCAGCAACGGCAAGCATTATGGTACTTCCCTTCCTCCGGCTGGTGC
CTTCATCCCCTCCTCCTCCTCTCCAGTAAGCAAGGATCACCCACACGTGT
CTCATCTGACGAATGACAGGCTGTCCTGGTGGCACTATGGGATCATGCTT
GCCTTAGTTTACATCAGCTTCGCGACTTATCCGGG

protein sequence of jgi.p|Nanoce1779_2|556929

>mRNA_6083-protein ID=mRNA_6083-protein|Name=jgi.p|Nanoce1779_2|556929|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MVKKEATRGGFNAILCHFVFFCRQLPHLCFMCRWNNDCQIIVPIGDTQEQ
LSTSIGIFPLCGTLGNERHACGRHDIQAAISSLFLLLCKCLALRLSYRTR
YTDGFTPFVSHTQPCRALSLVYGQCEPRLKDPSNPNQLEALLQMLLDEGL
LCAAAATWQQAAVIQPWAAPAPQRSPLCVCSRLCGATVSTLIENPTLTFI
SQSPHHRTSTSARGCGRRQGGPAAAATTTAVEARAPAFQPYFDLSRIARR
VTHVSG*

mRNA from alignment at scaffold_14:478313..480518+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6083 ID=mRNA_6083|Name=jgi.p|Nanoce1779_2|556929|organism=Nannochloropsis oceanica|type=mRNA|length=2206bp|location=Sequence derived from alignment at scaffold_14:478313..480518+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGACGGGGCGAGGCAGAGGGGCTGCAGAAGCGGTTGT
GGGTGATGGTGGCGAGGCATTTGATTGAGGTCGTCAAGGTCGTGCCGAAG
GAGGCCATGCATCTGCTGGATGAGTCGAATCATGTCTTGTCCATCGAAGA
CTTATTGCCGTATTTTCCAGAGATCACTACAATCGATGCCTTCAAAGAGA
AGATATGTGAGAGCCTCTCCTCCTACTCTCAAACCATCCAAGGCCTGAAA
CAAGAGATGGAGGAGCTAGCTATGTCGACGGCTGAGATGGAAAAAGCGAT
CGCTGCGCTAAAGGGACGGCATCTCTCCTTGAGCACCACCCAGAAGTGTG
ACTTGTGCAGTGACCCGGTACGTTCACAGTGATGGATGGAGGGCGGGAGG
GAGAGTACGCAAGACGTTTCTTCACACTTTCTCAATGGTCACCTTCTCGT
ACTCCCCCACTCCCTACTTCTCGTCCTTTGTTCCGTAGGCCCTGACCCAG
CACTTTTACCTGTTTCCTTGCCGGCATACCTTCCACGCTACGTGCCTCGC
CCGCTTTATCCTCCCTTACCTCAATCCGCTCCAACGCCGCGCCGTGCAAG
CACTACAAGAACAGCTCGCCGCAGAGATCTCAGGGGGAATGATAGGGAGG
GACAAAGGGAGGATGAGTCAACGCAAGGCTGCGCAGGTGGAAGCGTTGCA
GGGGGAGATTGATGGGTATTTAGCCGCGGAGTGCCCGTGGTGTGGGGATG
TGATGATACGGACGGTCGATGAACCATTGGTGGGGGAAGAGGAGGAGTCG
CAGATGGAGGCACGTGCGTGGATTATTGATTAGAAAGGAGAGTGGGAGAG
GGGAATGAAGGGTTTGTACAAAGGAGATGGTAAAAAAGGAGGCTACAAGA
GGGGGCTTCAATGCGATATTGTGTCACTTTGTTTTCTTTTGCCGTCAGCT
CCCACACCTTTGTTTCATGTGTCGCTGGAATAATGATTGCCAGATCATAG
TACCAATAGGGGATACGCAAGAACAATTGAGCACTTCTATTGGCATCTTT
CCCCTCTGTGGAACACTAGGCAACGAACGACACGCATGCGGGAGACATGA
TATCCAGGCAGCGATCAGTAGCCTTTTCTTGTTGCTGTGCAAATGCCTCG
CTCTCCGTCTCTCTTATCGTACCCGCTACACTGATGGATTCACCCCTTTC
GTCAGCCACACACAACCATGCAGGGCCCTTTCGCTGGTTTACGGGCAATG
TGAACCTCGTTTGAAAGATCCAAGCAACCCCAACCAACTTGAAGCGCTGC
TGCAGATGCTGCTTGATGAGGGGCTCCTGTGTGCTGCTGCTGCTACATGG
CAACAAGCGGCAGTCATTCAACCCTGGGCTGCGCCTGCACCACAACGATC
GCCGTTGTGTGTGTGTAGCCGACTCTGCGGGGCCACAGTCAGTACCCTGA
TTGAGAATCCAACACTAACTTTCATTTCCCAATCCCCTCATCATCGCACA
TCAACATCAGCTAGGGGTTGTGGTAGGCGGCAAGGTGGGCCGGCAGCAGC
AGCAACAACAACAGCAGTGGAAGCAAGAGCACCGGCGTTCCAGCCGTATT
TTGACCTTTCGAGAATCGCCCGGCGAGTCACGCACGTGAGTGGGTAGAAA
GGAACGCTCCTGCCTCTTGTGTGCGGGTCGTCTCTTTCTTTCATTCATTC
GTGCCTCCCTCCCTTCTGAGCACGGTGCAAACACGGGCGGAGCAACGGCG
GAAGGCTGCAGCCAGTCCTGGAATGGCAGCAGCAGCAATGAGCGCAGTAG
CTGAAAGCAATCCACCAAGTAGGGGTGCCAGGGTCCGAAAATCCAATCAG
GTCGTCTCAGCCCCGCCTTCCTCCTCCTCTTCTTCCTCAACTGTGAATGG
ACACCATCACCCCGCCCATAACCATGATGCCGGGACAGCTGCAGGCAGCA
GTAGAAACAGTCGGCCAAATTCCCGGATGGAAAACGGCATCTCCACTAGC
AGTGCCAACAAGAGCAACAGCAGCAGCAGCAACGGCAAGCATTATGGTAC
TTCCCTTCCTCCGGCTGGTGCCTTCATCCCCTCCTCCTCCTCTCCAGTAA
GCAAGGATCACCCACACGTGTCTCATCTGACGAATGACAGGCTGTCCTGG
TGGCACTATGGGATCATGCTTGCCTTAGTTTACATCAGCTTCGCGACTTA
TCCGGG

Coding sequence (CDS) from alignment at scaffold_14:478313..480518+

>mRNA_6083 ID=mRNA_6083|Name=jgi.p|Nanoce1779_2|556929|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_14:478313..480518+ (Nannochloropsis oceanica)
ATGGTAAAAAAGGAGGCTACAAGAGGGGGCTTCAATGCGATATTGTGTCA
CTTTGTTTTCTTTTGCCGTCAGCTCCCACACCTTTGTTTCATGTGTCGCT
GGAATAATGATTGCCAGATCATAGTACCAATAGGGGATACGCAAGAACAA
TTGAGCACTTCTATTGGCATCTTTCCCCTCTGTGGAACACTAGGCAACGA
ACGACACGCATGCGGGAGACATGATATCCAGGCAGCGATCAGTAGCCTTT
TCTTGTTGCTGTGCAAATGCCTCGCTCTCCGTCTCTCTTATCGTACCCGC
TACACTGATGGATTCACCCCTTTCGTCAGCCACACACAACCATGCAGGGC
CCTTTCGCTGGTTTACGGGCAATGTGAACCTCGTTTGAAAGATCCAAGCA
ACCCCAACCAACTTGAAGCGCTGCTGCAGATGCTGCTTGATGAGGGGCTC
CTGTGTGCTGCTGCTGCTACATGGCAACAAGCGGCAGTCATTCAACCCTG
GGCTGCGCCTGCACCACAACGATCGCCGTTGTGTGTGTGTAGCCGACTCT
GCGGGGCCACAGTCAGTACCCTGATTGAGAATCCAACACTAACTTTCATT
TCCCAATCCCCTCATCATCGCACATCAACATCAGCTAGGGGTTGTGGTAG
GCGGCAAGGTGGGCCGGCAGCAGCAGCAACAACAACAGCAGTGGAAGCAA
GAGCACCGGCGTTCCAGCCGTATTTTGACCTTTCGAGAATCGCCCGGCGA
GTCACGCACGTGAGTGGGTAG

Synonyms

Publications