jgi.p|Nanoce1779_2|81319, mRNA_6082 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|81319
Unique Name	mRNA_6082
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1780
Alignment location	scaffold_14:477377..479277 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	81405
Track	FilteredModels2
ProteinId	81319

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:477377..479277 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|81319	gene_6082	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|81319	mRNA_6082-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6082	CDS_6082	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:477377..479277+
coding sequence from alignment at scaffold_14:477377..479277+

mRNA sequence

>mRNA_6082 ID=mRNA_6082|Name=jgi.p|Nanoce1779_2|81319|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp
GGGGGGGGGAGGGCAGGACGGCGGGGGAGAGGAGGAAGAGTATGAAAGGA
CGGTGGATGAGTTTCGGTGTTTTTTGCGAGGACATATCGAGGACTTAAAA
ATACACCCCCCGACGACCTACTCCCTCTTGGCGTCCCATGGGAGGAAGCG
GGAGATACTGCTGTACGCGACATTGATGGACGATGTGGACCGCGTGGTGA
GTTTCCACGTGACGGAGGGGGAATATGGGCCGGCGCTGGGCGTCTTGACA
GACGCAGAATTTGACCGTGTGGAGGGATTGTTTTACAAGTACGCGTATCA
GTTGATGGAGAATGAGCCCATGAGGACTCTGGCTGTGTGGATGAGCAAGC
CCGGCTTGAATCCCGTGAAGCTCCTGCCGGCTCTTGCCAAGCATATTGCC
TTGGCCTCCTCTGCCGCCGCCTCCTCCTCCCTCTCTTCCCCCCCCCTCTC
CTCGGAGAAAGGGGGGAGCGCCGGAGGAAAGGGAGGAAAGAGGAGGGAGC
AGTCGGAGAGTGACGTGCGGGACTTGGCCATGCGCTACCTCGAGTACTGC
ATCTCCCCCTCGGGATTAGCCTCCTCCAACCATCGTTCTTCCCTCCCTCC
CTCCGTCCCTCCCTCCTCCCCCGTTCTCTACAACTATCTCTTGCAACTCT
ACGCCCTTGCCACCGACGACAAGGGCGAGGGAAAGCTCCTCCGCTTCCTT
CGGACGCATGCCTCGTCTGGGATTGGGGATGGAATAAAAGAGGGAGGCAG
AGTGGCGGCGCTTGATTTGCGGTATGCTTTACGGGTGTGTGGGCAGCACC
ATAAAACTCGTGCGTGTGTGTTTTTATATTCGTGTCTGGGTCTCTATGAG
GAAGCGGTGGCGTTAGCCTTGCGAGCGGGAGAGGTAGAGCTAGCTAAGGA
ACAAGCACAGAATGCCGGGAATGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GACGGGGCGAGGCAGAGGGGCTGCAGAAGCGGTTGTGGGTGATGGTGGCG
AGGCATTTGATTGAGGTCGTCAAGGTCGTGCCGAAGGAGGCCATGCATCT
GCTGGATGAGTCGAATCATGTCTTGTCCATCGAAGACTTATTGCCGTATT
TTCCAGAGATCACTACAATCGATGCCTTCAAAGAGAAGATATGTGAGAGC
CTCTCCTCCTACTCTCAAACCATCCAAGGCCTGAAACAAGAGATGGAGGA
GCTAGCTATGTCGACGGCTGAGATGGAAAAAGCGATCGCTGCGCTAAAGG
GACGGCATCTCTCCTTGAGCACCACCCAGAAGTGTGACTTGTGCAGTGAC
CCGGCCCTGACCCAGCACTTTTACCTGTTTCCTTGCCGGCATACCTTCCA
CGCTACGTGCCTCGCCCGCTTTATCCTCCCTTACCTCAATCCGCTCCAAC
GCCGCGCCGTGCAAGCACTACAAGAACAGCTCGCCGCAGAGATCTCAGGG
GGAATGATAGGGAGGGACAAAGGGAGGATGAGTCAACGCAAGGCTGCGCA
GGTGGAAGCGTTGCAGGGGGAGATTGATGGGTATTTAGCCGCGGAGTGCC
CGTGGTGTGGGGATGTGATGATACGGACGGTCGATGAACCATTGGTGGGG
GAAGAGGAGGAGTCGCAGATGGAGGCACGTGCGTGGATTATTGATTAGAA
AGGAGAGTGGGAGAGGGGAATGAAGGGTTTGTACAAAGGAGATGGTAAAA
AAGGAGGCTACAAGAGGGGGCTTCAATGCGATATTGTGTCACTTTGTTTT
CTTTTGCCGTCAGCTCCCACACCTTTGTTT

protein sequence of jgi.p|Nanoce1779_2|81319

>mRNA_6082-protein ID=mRNA_6082-protein|Name=jgi.p|Nanoce1779_2|81319|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MDDVDRVVSFHVTEGEYGPALGVLTDAEFDRVEGLFYKYAYQLMENEPMR
TLAVWMSKPGLNPVKLLPALAKHIALASSAAASSSLSSPPLSSEKGGSAG
GKGGKRREQSESDVRDLAMRYLEYCISPSGLASSNHRSSLPPSVPPSSPV
LYNYLLQLYALATDDKGEGKLLRFLRTHASSGIGDGIKEGGRVAALDLRY
ALRVCGQHHKTRACVFLYSCLGLYEEAVALALRAGEVELAKEQAQNAGNE
GGREGGREGRGEAEGLQKRLWVMVARHLIEVVKVVPKEAMHLLDESNHVL
SIEDLLPYFPEITTIDAFKEKICESLSSYSQTIQGLKQEMEELAMSTAEM
EKAIAALKGRHLSLSTTQKCDLCSDPALTQHFYLFPCRHTFHATCLARFI
LPYLNPLQRRAVQALQEQLAAEISGGMIGRDKGRMSQRKAAQVEALQGEI
DGYLAAECPWCGDVMIRTVDEPLVGEEEESQMEARAWIID*

mRNA from alignment at scaffold_14:477377..479277+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6082 ID=mRNA_6082|Name=jgi.p|Nanoce1779_2|81319|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp|location=Sequence derived from alignment at scaffold_14:477377..479277+ (Nannochloropsis oceanica)
GGGGGGGGGAGGGCAGGACGGCGGGGGAGAGGAGGAAGAGTATGAAAGGA
CGGTGGATGAGTTTCGGTGTTTTTTGCGAGGACATATCGAGGACTTAAAA
ATACACCCCCCGACGACCTACTCCCTCTTGGCGTCCCATGGGAGGAAGCG
GGAGATACTGCTGTACGCGACATTGATGGACGATGTGGACCGCGTGGTGA
GTTTCCACGTGACGGAGGGGGAATATGGGCCGGCGCTGGGCGTCTTGACA
GACGCAGAATTTGACCGTGTGGAGGGATTGTTTTACAAGTACGCGTATCA
GTTGATGGAGAATGAGCCCATGAGGACTCTGGCTGTGTGGATGAGCAAGC
CCGGCTTGAATCCCGTGAAGCTCCTGCCGGCTCTTGCCAAGCATATTGCC
TTGGCCTCCTCTGCCGCCGCCTCCTCCTCCCTCTCTTCCCCCCCCCTCTC
CTCGGAGAAAGGGGGGAGCGCCGGAGGAAAGGGAGGAAAGAGGAGGGAGC
AGTCGGAGAGTGACGTGCGGGACTTGGCCATGCGCTACCTCGAGTACTGC
ATCTCCCCCTCGGGATTAGCCTCCTCCAACCATCGTTCTTCCCTCCCTCC
CTCCGTCCCTCCCTCCTCCCCCGTTCTCTACAACTATCTCTTGCAACTCT
ACGCCCTTGCCACCGACGACAAGGGCGAGGGAAAGCTCCTCCGCTTCCTT
CGGACGCATGCCTCGTCTGGGATTGGGGATGGAATAAAAGAGGGAGGCAG
AGTGGCGGCGCTTGATTTGCGGTATGCTTTACGGGTGTGTGGGCAGCACC
ATAAAACTCGTGCGTGTGTGTTTTTATATTCGTGTCTGGGTCTCTATGAG
GAAGCGGTGGCGTTAGCCTTGCGAGCGGGAGAGGTAGAGCTAGCTAAGGA
ACAAGCACAGAATGCCGGGAATGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GACGGGGCGAGGCAGAGGGGCTGCAGAAGCGGTTGTGGGTGATGGTGGCG
AGGCATTTGATTGAGGTCGTCAAGGTCGTGCCGAAGGAGGCCATGCATCT
GCTGGATGAGTCGAATCATGTCTTGTCCATCGAAGACTTATTGCCGTATT
TTCCAGAGATCACTACAATCGATGCCTTCAAAGAGAAGATATGTGAGAGC
CTCTCCTCCTACTCTCAAACCATCCAAGGCCTGAAACAAGAGATGGAGGA
GCTAGCTATGTCGACGGCTGAGATGGAAAAAGCGATCGCTGCGCTAAAGG
GACGGCATCTCTCCTTGAGCACCACCCAGAAGTGTGACTTGTGCAGTGAC
CCGGTACGTTCACAGTGATGGATGGAGGGCGGGAGGGAGAGTACGCAAGA
CGTTTCTTCACACTTTCTCAATGGTCACCTTCTCGTACTCCCCCACTCCC
TACTTCTCGTCCTTTGTTCCGTAGGCCCTGACCCAGCACTTTTACCTGTT
TCCTTGCCGGCATACCTTCCACGCTACGTGCCTCGCCCGCTTTATCCTCC
CTTACCTCAATCCGCTCCAACGCCGCGCCGTGCAAGCACTACAAGAACAG
CTCGCCGCAGAGATCTCAGGGGGAATGATAGGGAGGGACAAAGGGAGGAT
GAGTCAACGCAAGGCTGCGCAGGTGGAAGCGTTGCAGGGGGAGATTGATG
GGTATTTAGCCGCGGAGTGCCCGTGGTGTGGGGATGTGATGATACGGACG
GTCGATGAACCATTGGTGGGGGAAGAGGAGGAGTCGCAGATGGAGGCACG
TGCGTGGATTATTGATTAGAAAGGAGAGTGGGAGAGGGGAATGAAGGGTT
TGTACAAAGGAGATGGTAAAAAAGGAGGCTACAAGAGGGGGCTTCAATGC
GATATTGTGTCACTTTGTTTTCTTTTGCCGTCAGCTCCCACACCTTTGTT
T

Coding sequence (CDS) from alignment at scaffold_14:477377..479277+

>mRNA_6082 ID=mRNA_6082|Name=jgi.p|Nanoce1779_2|81319|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_14:477377..479277+ (Nannochloropsis oceanica)
ATGGACGATGTGGACCGCGTGGTGAGTTTCCACGTGACGGAGGGGGAATA
TGGGCCGGCGCTGGGCGTCTTGACAGACGCAGAATTTGACCGTGTGGAGG
GATTGTTTTACAAGTACGCGTATCAGTTGATGGAGAATGAGCCCATGAGG
ACTCTGGCTGTGTGGATGAGCAAGCCCGGCTTGAATCCCGTGAAGCTCCT
GCCGGCTCTTGCCAAGCATATTGCCTTGGCCTCCTCTGCCGCCGCCTCCT
CCTCCCTCTCTTCCCCCCCCCTCTCCTCGGAGAAAGGGGGGAGCGCCGGA
GGAAAGGGAGGAAAGAGGAGGGAGCAGTCGGAGAGTGACGTGCGGGACTT
GGCCATGCGCTACCTCGAGTACTGCATCTCCCCCTCGGGATTAGCCTCCT
CCAACCATCGTTCTTCCCTCCCTCCCTCCGTCCCTCCCTCCTCCCCCGTT
CTCTACAACTATCTCTTGCAACTCTACGCCCTTGCCACCGACGACAAGGG
CGAGGGAAAGCTCCTCCGCTTCCTTCGGACGCATGCCTCGTCTGGGATTG
GGGATGGAATAAAAGAGGGAGGCAGAGTGGCGGCGCTTGATTTGCGGTAT
GCTTTACGGGTGTGTGGGCAGCACCATAAAACTCGTGCGTGTGTGTTTTT
ATATTCGTGTCTGGGTCTCTATGAGGAAGCGGTGGCGTTAGCCTTGCGAG
CGGGAGAGGTAGAGCTAGCTAAGGAACAAGCACAGAATGCCGGGAATGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGACGGGGCGAGGCAGAGGGGCTGCA
GAAGCGGTTGTGGGTGATGGTGGCGAGGCATTTGATTGAGGTCGTCAAGG
TCGTGCCGAAGGAGGCCATGCATCTGCTGGATGAGTCGAATCATGTCTTG
TCCATCGAAGACTTATTGCCGTATTTTCCAGAGATCACTACAATCGATGC
CTTCAAAGAGAAGATATGTGAGAGCCTCTCCTCCTACTCTCAAACCATCC
AAGGCCTGAAACAAGAGATGGAGGAGCTAGCTATGTCGACGGCTGAGATG
GAAAAAGCGATCGCTGCGCTAAAGGGACGGCATCTCTCCTTGAGCACCAC
CCAGAAGTGTGACTTGTGCAGTGACCCGGCCCTGACCCAGCACTTTTACC
TGTTTCCTTGCCGGCATACCTTCCACGCTACGTGCCTCGCCCGCTTTATC
CTCCCTTACCTCAATCCGCTCCAACGCCGCGCCGTGCAAGCACTACAAGA
ACAGCTCGCCGCAGAGATCTCAGGGGGAATGATAGGGAGGGACAAAGGGA
GGATGAGTCAACGCAAGGCTGCGCAGGTGGAAGCGTTGCAGGGGGAGATT
GATGGGTATTTAGCCGCGGAGTGCCCGTGGTGTGGGGATGTGATGATACG
GACGGTCGATGAACCATTGGTGGGGGAAGAGGAGGAGTCGCAGATGGAGG
CACGTGCGTGGATTATTGATTAGATGGACGATGTGGACCGCGTGGTGAGT
TTCCACGTGACGGAGGGGGAATATGGGCCGGCGCTGGGCGTCTTGACAGA
CGCAGAATTTGACCGTGTGGAGGGATTGTTTTACAAGTACGCGTATCAGT
TGATGGAGAATGAGCCCATGAGGACTCTGGCTGTGTGGATGAGCAAGCCC
GGCTTGAATCCCGTGAAGCTCCTGCCGGCTCTTGCCAAGCATATTGCCTT
GGCCTCCTCTGCCGCCGCCTCCTCCTCCCTCTCTTCCCCCCCCCTCTCCT
CGGAGAAAGGGGGGAGCGCCGGAGGAAAGGGAGGAAAGAGGAGGGAGCAG
TCGGAGAGTGACGTGCGGGACTTGGCCATGCGCTACCTCGAGTACTGCAT
CTCCCCCTCGGGATTAGCCTCCTCCAACCATCGTTCTTCCCTCCCTCCCT
CCGTCCCTCCCTCCTCCCCCGTTCTCTACAACTATCTCTTGCAACTCTAC
GCCCTTGCCACCGACGACAAGGGCGAGGGAAAGCTCCTCCGCTTCCTTCG
GACGCATGCCTCGTCTGGGATTGGGGATGGAATAAAAGAGGGAGGCAGAG
TGGCGGCGCTTGATTTGCGGTATGCTTTACGGGTGTGTGGGCAGCACCAT
AAAACTCGTGCGTGTGTGTTTTTATATTCGTGTCTGGGTCTCTATGAGGA
AGCGGTGGCGTTAGCCTTGCGAGCGGGAGAGGTAGAGCTAGCTAAGGAAC
AAGCACAGAATGCCGGGAATGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
CGGGGCGAGGCAGAGGGGCTGCAGAAGCGGTTGTGGGTGATGGTGGCGAG
GCATTTGATTGAGGTCGTCAAGGTCGTGCCGAAGGAGGCCATGCATCTGC
TGGATGAGTCGAATCATGTCTTGTCCATCGAAGACTTATTGCCGTATTTT
CCAGAGATCACTACAATCGATGCCTTCAAAGAGAAGATATGTGAGAGCCT
CTCCTCCTACTCTCAAACCATCCAAGGCCTGAAACAAGAGATGGAGGAGC
TAGCTATGTCGACGGCTGAGATGGAAAAAGCGATCGCTGCGCTAAAGGGA
CGGCATCTCTCCTTGAGCACCACCCAGAAGTGTGACTTGTGCAGTGACCC
GGCCCTGACCCAGCACTTTTACCTGTTTCCTTGCCGGCATACCTTCCACG
CTACGTGCCTCGCCCGCTTTATCCTCCCTTACCTCAATCCGCTCCAACGC
CGCGCCGTGCAAGCACTACAAGAACAGCTCGCCGCAGAGATCTCAGGGGG
AATGATAGGGAGGGACAAAGGGAGGATGAGTCAACGCAAGGCTGCGCAGG
TGGAAGCGTTGCAGGGGGAGATTGATGGGTATTTAGCCGCGGAGTGCCCG
TGGTGTGGGGATGTGATGATACGGACGGTCGATGAACCATTGGTGGGGGA
AGAGGAGGAGTCGCAGATGGAGGCACGTGCGTGGATTATTGATTAG

Synonyms

Publications