jgi.p|Nanoce1779_2|566883, mRNA_6078 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566883
Unique NamemRNA_6078
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length792
Alignment locationscaffold_14:466719..467541 -

Link to JBrowse

Properties
Property NameValue
TranscriptId566969
TrackFilteredModels2
ProteinId566883
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:466719..467541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566883gene_6078Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566883mRNA_6078-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6078CDS_6078Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6078 ID=mRNA_6078|Name=jgi.p|Nanoce1779_2|566883|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGTCCTCCTCATCCGGTCTGTCTATGCGCCTGTTGTGGCACCCTGACGT
GCCTCACATGAAACTTCGTGTCTACCAGTTCGATCGATTGTTGTCCGAGC
ATCTGCCAAGGCTACATGTGCATTTTAAGTATATTTGTTTGGCGCCTGAT
ATTTTGGTGACGCAGTGGCATATGACCCTGCTGGCGTATTGCCTACCTTT
GCGCGTGTTAACCCGTGTATGGGACGTCGTGTTTCAAGATGGGTGGAAAG
CGCTTTTCCGAATCTCACTTGCGCTGCTTCAGGCGGTGGAGGAGGATTTG
TTGGTGTTGAACCTAGAAGAGTCCGGGCGTTTTTTGAGGCAATGGACTTC
GAAGCGACATCCGCTATGGAGAAATGCTGAGCTGCTGTTGAGGGCAGCAA
GAAGATGGAAGGTGACTAGGACGACGCTGACGCAATTGCAGGAAGAGTTT
GCCTTGACTCTGCTGAAAGAGCAGTTAAAAGCTGTTGCTGCAGGTGGTGG
TGATGGAAATAGTGGGAAGATTACGGGTCTGACGGGAGAGTGGTTGAGTC
GGTACGGGCCTCCGGGAGAAGAAGGGGGGGAAGGCTGCTGCTTGCTGAAG
GGGCCGGAGCTGGAAGGGCTGCAAAGGGACATTGAATTGATTGAAGGGCC
TGTAGCTAGGGATTTTGCGCATTATCGTGTGAAGATTGAGGAGGCGAGCG
TGGGGTGTGAGCTGGCGGGGAGGAGGGTGGGGGAGTTGGAGGGGAGGATG
ACCGCGCTTAGGATGCAGGTAGAGGAGATGGAGGAGGGATAA
back to top

protein sequence of jgi.p|Nanoce1779_2|566883

>mRNA_6078-protein ID=mRNA_6078-protein|Name=jgi.p|Nanoce1779_2|566883|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MSSSSGLSMRLLWHPDVPHMKLRVYQFDRLLSEHLPRLHVHFKYICLAPD
ILVTQWHMTLLAYCLPLRVLTRVWDVVFQDGWKALFRISLALLQAVEEDL
LVLNLEESGRFLRQWTSKRHPLWRNAELLLRAARRWKVTRTTLTQLQEEF
ALTLLKEQLKAVAAGGGDGNSGKITGLTGEWLSRYGPPGEEGGEGCCLLK
GPELEGLQRDIELIEGPVARDFAHYRVKIEEASVGCELAGRRVGELEGRM
TALRMQVEEMEEG*
back to top

mRNA from alignment at scaffold_14:466719..467541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6078 ID=mRNA_6078|Name=jgi.p|Nanoce1779_2|566883|organism=Nannochloropsis oceanica|type=mRNA|length=823bp|location=Sequence derived from alignment at scaffold_14:466719..467541- (Nannochloropsis oceanica)
ATGTCCTCCTCATCCGGTCTGTCTATGCGCCTGTTGTGGCACCCTGACGT
GCCTCACATGAAACTTCGTGTCTACCAGTTCGATCGATTGTTGTCCGAGC
ATCTGCCAAGGCTACATGTGCATTTTAAGTATATTTGTTTGGCGCCTGAT
ATTTTGGTGACGCAGTGGCATATGACCCTGCTGGCGTATTGCCTACCTTT
GCGCGTGTTAACCCGTGTATGGGACGTCGTGTTTCAAGATGGGTGGAAAG
CGCTTTTCCGAATCTCACTTGCGCTGCTTCAGGCGGTGGAGGAGGATTTG
TTGGTGTTGAACCTAGAAGAGTCCGGGCGTTTTTTGAGGCAATGGACTTC
GAAGCGACATCCGCTATGGAGAAATGCTGAGCTGCTGTTGAGGGCAGCAA
GAAGATGGAAGGTGACTAGGACGACGCTGACGCAATTGCAGGAAGAGTTT
GCCTTGACTCTGCTGAAAGAGCAGTTAAAAGCTGTTGCTGCAGGTGGTGG
TGATGGAAATAGTGGGAAGATTACGGGTCTGACGGGAGAGTGGTTGAGTC
GGTACGGGCCTCCGGGAGAAGAAGGGGGGGAAGGCTGCTGCTTGCTGAAG
GGGCCGGAGCTGGAAGGGCTGCAAAGGGACATTGAATTGATTGAAGGGCC
TGTAGCTAGGGATTTTGCGCATTATCGTGTGAAGATTGAGGAGGCGAGCG
TGGGGTGTGAGCTGGCGGGGAGGAGGGTGGGGGAGTTGGAGGGGAGGATG
ACCGCGCTTAGGATGCAGGTAGAGGAGATGGAGGAGGTGTGTTCGGCTTT
ACATAACCAACTTGCAGGGATAA
back to top

Coding sequence (CDS) from alignment at scaffold_14:466719..467541-

>mRNA_6078 ID=mRNA_6078|Name=jgi.p|Nanoce1779_2|566883|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_14:466719..467541- (Nannochloropsis oceanica)
GGATAAATGTCCTCCTCATCCGGTCTGTCTATGCGCCTGTTGTGGCACCC
TGACGTGCCTCACATGAAACTTCGTGTCTACCAGTTCGATCGATTGTTGT
CCGAGCATCTGCCAAGGCTACATGTGCATTTTAAGTATATTTGTTTGGCG
CCTGATATTTTGGTGACGCAGTGGCATATGACCCTGCTGGCGTATTGCCT
ACCTTTGCGCGTGTTAACCCGTGTATGGGACGTCGTGTTTCAAGATGGGT
GGAAAGCGCTTTTCCGAATCTCACTTGCGCTGCTTCAGGCGGTGGAGGAG
GATTTGTTGGTGTTGAACCTAGAAGAGTCCGGGCGTTTTTTGAGGCAATG
GACTTCGAAGCGACATCCGCTATGGAGAAATGCTGAGCTGCTGTTGAGGG
CAGCAAGAAGATGGAAGGTGACTAGGACGACGCTGACGCAATTGCAGGAA
GAGTTTGCCTTGACTCTGCTGAAAGAGCAGTTAAAAGCTGTTGCTGCAGG
TGGTGGTGATGGAAATAGTGGGAAGATTACGGGTCTGACGGGAGAGTGGT
TGAGTCGGTACGGGCCTCCGGGAGAAGAAGGGGGGGAAGGCTGCTGCTTG
CTGAAGGGGCCGGAGCTGGAAGGGCTGCAAAGGGACATTGAATTGATTGA
AGGGCCTGTAGCTAGGGATTTTGCGCATTATCGTGTGAAGATTGAGGAGG
CGAGCGTGGGGTGTGAGCTGGCGGGGAGGAGGGTGGGGGAGTTGGAGGGG
AGGATGACCGCGCTTAGGATGCAGGTAGAGGAGATGGAGGAGGGATAAAT
GTCCTCCTCATCCGGTCTGTCTATGCGCCTGTTGTGGCACCCTGACGTGC
CTCACATGAAACTTCGTGTCTACCAGTTCGATCGATTGTTGTCCGAGCAT
CTGCCAAGGCTACATGTGCATTTTAAGTATATTTGTTTGGCGCCTGATAT
TTTGGTGACGCAGTGGCATATGACCCTGCTGGCGTATTGCCTACCTTTGC
GCGTGTTAACCCGTGTATGGGACGTCGTGTTTCAAGATGGGTGGAAAGCG
CTTTTCCGAATCTCACTTGCGCTGCTTCAGGCGGTGGAGGAGGATTTGTT
GGTGTTGAACCTAGAAGAGTCCGGGCGTTTTTTGAGGCAATGGACTTCGA
AGCGACATCCGCTATGGAGAAATGCTGAGCTGCTGTTGAGGGCAGCAAGA
AGATGGAAGGTGACTAGGACGACGCTGACGCAATTGCAGGAAGAGTTTGC
CTTGACTCTGCTGAAAGAGCAGTTAAAAGCTGTTGCTGCAGGTGGTGGTG
ATGGAAATAGTGGGAAGATTACGGGTCTGACGGGAGAGTGGTTGAGTCGG
TACGGGCCTCCGGGAGAAGAAGGGGGGGAAGGCTGCTGCTTGCTGAAGGG
GCCGGAGCTGGAAGGGCTGCAAAGGGACATTGAATTGATTGAAGGGCCTG
TAGCTAGGGATTTTGCGCATTATCGTGTGAAGATTGAGGAGGCGAGCGTG
GGGTGTGAGCTGGCGGGGAGGAGGGTGGGGGAGTTGGAGGGGAGGATGAC
CGCGCTTAGGATGCAGGTAGAGGAGATGGAGGAG
back to top
Synonyms
Publications