jgi.p|Nanoce1779_2|593672, mRNA_6076 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593672
Unique Name	mRNA_6076
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	934
Alignment location	scaffold_14:463742..465260 +

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Properties


Property Name	Value
TranscriptId	593758
Track	FilteredModels2
ProteinId	593672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:463742..465260 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593672	gene_6076	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593672	mRNA_6076-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6076	CDS_6076	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:463742..465260+
coding sequence from alignment at scaffold_14:463742..465260+

mRNA sequence

>mRNA_6076 ID=mRNA_6076|Name=jgi.p|Nanoce1779_2|593672|organism=Nannochloropsis oceanica|type=mRNA|length=934bp
GGAGGGAGGGAGGGAAAGAATTGTGCGGCTTGTGATGTTGAAAGAGGGTG
TTTCAAAATTGGTGATCTTCTTCTATCATCATGCTGCTCATCTCTTGTCC
TATTGATTCCTCCCTTCCTTCTCGTTGTGCAGGCTACAAATGGAAGTAAA
CACCATGGCCCCCTCCTTAGAGATTGCCAGCGAGTCCCCCCTCCGCTCTC
TAGTCAAAGCTTGCTCTTGGCGGCTTGTCGCTGCTCTGATTACCCTCAGT
ACTTCCCTCTTCTTCTCACGCGATGCGAAAATGGCCGCATCCATCGTTTC
CTCAGATTTTCTGTCCAAAGCGGGGACTATGTACGCGGGCGAGCGACTAT
GGAACAAGGTGTCATGGGGCAAAGAAGCTAAAGCGGGAGATGCAGCTTCC
CGATCGATCATTAAAGCTTTCGCCTGGCGGGCGTTCGCGATGGTGAACAC
TTTGGTCATTTCCATCTTCTTTGCCAAGAGTGTTAAAATTGCCGGTCAAA
TTGCCTCTACCGACACCATCATCAAGACGTCTCTCTACGTGGTGCACGAG
CGTATCTGGTCCAAAATTGATTGGGGACGATCGTATGACGTGGAATACAA
CATTTAGATAAGTGGAACGGAGGAAGGGAAGAATGGAAGGGATGGAGGGA
GGGGCGGAAGTGTATACATAGATAAACGGAGGACAAGGATGGAGGAATTG
TTGTGTTTTTCTTGGAGTCAAACCAATGCAATTACTGCAGTAGGAGACGA
TGAAAGTGGAGTGGGGAAGGAGATGTGGTAGTAAGGAAGACGTGGCGTTG
GCGGAAAGAGGAGTCGGTCAGGCTGTGGGAGATGCTAGGCTTGGACGGAG
GCATAGTAAGAAGGATGAGGACGGCGGCGATGGCAAGTTTCAGAACTGTC
AACAACAACAACAACAACAACAACAACAACAACA

protein sequence of jgi.p|Nanoce1779_2|593672

>mRNA_6076-protein ID=mRNA_6076-protein|Name=jgi.p|Nanoce1779_2|593672|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MEVNTMAPSLEIASESPLRSLVKACSWRLVAALITLSTSLFFSRDAKMAA
SIVSSDFLSKAGTMYAGERLWNKVSWGKEAKAGDAASRSIIKAFAWRAFA
MVNTLVISIFFAKSVKIAGQIASTDTIIKTSLYVVHERIWSKIDWGRSYD
VEYNI*

mRNA from alignment at scaffold_14:463742..465260+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6076 ID=mRNA_6076|Name=jgi.p|Nanoce1779_2|593672|organism=Nannochloropsis oceanica|type=mRNA|length=1519bp|location=Sequence derived from alignment at scaffold_14:463742..465260+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAAAGAATTGTGCGGCTTGTGATGTTGAAAGAGGGTG
TTTCAAAATTGGTGATCTTCTTCTATCATCATGCTGCTCATCTCTTGTCC
TATTGATTCCTCCCTTCCTTCTCGTTGTGCAGGCTACAAATGGAAGTAAA
CACCATGGCCCCCTCCTTAGAGATTGCCAGCGAGTCCCCCCTCCGCTCTC
TAGTCAAAGCTTGCTCTTGGCGGCTTGTCGCTGCTCTGATTACCCTCAGT
ACTTCCCTCTTCTTCTCACGCGAGTACGTAACGTTTGTTTCTCACTCCAT
CCCTGTGTGTTTGAGTGCGTCTGTTTCCGTGTAGGAGGGGAGGGAGTCTG
TCAATGCTAAGTCTTCCCGCGGCCCACCAGTCACGACCTGCTCTTTGGGT
GGTGGTGGTGCCTCCCTCTTTCTCCTAAGCACGTCTTGTCTCCCCTTATT
GTGTACGAGAATGTACGTGTCCCATCACGCCCTCGTTCAATGGGCGCTTT
CTCTCTAATTGATTCTGCCGGTCTTTCTCGCACTGCCGTCTCCTTTCTCT
TTGCGCTGCCTTCCGTTGATTTCCGTTGCTCCCTCCCTCTCTCCCTCCCT
CCCACTTTAATCGTGAAGTGCGAAAATGGCCGCATCCATCGTTTCCTCAG
ATTTTCTGTCCAAAGCGGGGACTATGTACGCGGGCGAGCGACTATGGAAC
AAGGTGTCATGGGGCAAAGAAGCTAAAGCGGGAGATGCAGCTTCCCGATC
GATCATTAAAGCTTTCGCCTGGCGGGCGTTCGCGATGGTGAACACTTTGG
TCATTTCCATCTTCTTTGCCAAGAGTGTTAAAATTGGTATGTCTCGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGATGGTGTCTATCAG
GATTCTGGCTGGTGTTTGCTGAAACGAACAATATAATTATTTTCATCTTC
TCTGTAAATAGTGTTATATAAGAATGGTTTGTGGGTCTTGAGGCGCTTTC
TCTCTTTCACCTCATTTTCCTCGATTGTAGCACTTACTCATCCATTCATC
CCTCCTTCCCTTCCTCCTTCCCTTAGCCGGTCAAATTGCCTCTACCGACA
CCATCATCAAGACGTCTCTCTACGTGGTGCACGAGCGTATCTGGTCCAAA
ATTGATTGGGGACGATCGTATGACGTGGAATACAACATTTAGATAAGTGG
AACGGAGGAAGGGAAGAATGGAAGGGATGGAGGGAGGGGCGGAAGTGTAT
ACATAGATAAACGGAGGACAAGGATGGAGGAATTGTTGTGTTTTTCTTGG
AGTCAAACCAATGCAATTACTGCAGTAGGAGACGATGAAAGTGGAGTGGG
GAAGGAGATGTGGTAGTAAGGAAGACGTGGCGTTGGCGGAAAGAGGAGTC
GGTCAGGCTGTGGGAGATGCTAGGCTTGGACGGAGGCATAGTAAGAAGGA
TGAGGACGGCGGCGATGGCAAGTTTCAGAACTGTCAACAACAACAACAAC
AACAACAACAACAACAACA

Coding sequence (CDS) from alignment at scaffold_14:463742..465260+

>mRNA_6076 ID=mRNA_6076|Name=jgi.p|Nanoce1779_2|593672|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_14:463742..465260+ (Nannochloropsis oceanica)
ATGGAAGTAAACACCATGGCCCCCTCCTTAGAGATTGCCAGCGAGTCCCC
CCTCCGCTCTCTAGTCAAAGCTTGCTCTTGGCGGCTTGTCGCTGCTCTGA
TTACCCTCAGTACTTCCCTCTTCTTCTCACGCGATGCGAAAATGGCCGCA
TCCATCGTTTCCTCAGATTTTCTGTCCAAAGCGGGGACTATGTACGCGGG
CGAGCGACTATGGAACAAGGTGTCATGGGGCAAAGAAGCTAAAGCGGGAG
ATGCAGCTTCCCGATCGATCATTAAAGCTTTCGCCTGGCGGGCGTTCGCG
ATGGTGAACACTTTGGTCATTTCCATCTTCTTTGCCAAGAGTGTTAAAAT
TGCCGGTCAAATTGCCTCTACCGACACCATCATCAAGACGTCTCTCTACG
TGGTGCACGAGCGTATCTGGTCCAAAATTGATTGGGGACGATCGTATGAC
GTGGAATACAACATTTAGATGGAAGTAAACACCATGGCCCCCTCCTTAGA
GATTGCCAGCGAGTCCCCCCTCCGCTCTCTAGTCAAAGCTTGCTCTTGGC
GGCTTGTCGCTGCTCTGATTACCCTCAGTACTTCCCTCTTCTTCTCACGC
GATGCGAAAATGGCCGCATCCATCGTTTCCTCAGATTTTCTGTCCAAAGC
GGGGACTATGTACGCGGGCGAGCGACTATGGAACAAGGTGTCATGGGGCA
AAGAAGCTAAAGCGGGAGATGCAGCTTCCCGATCGATCATTAAAGCTTTC
GCCTGGCGGGCGTTCGCGATGGTGAACACTTTGGTCATTTCCATCTTCTT
TGCCAAGAGTGTTAAAATTGCCGGTCAAATTGCCTCTACCGACACCATCA
TCAAGACGTCTCTCTACGTGGTGCACGAGCGTATCTGGTCCAAAATTGAT
TGGGGACGATCGTATGACGTGGAATACAACATTTAGATGGAAGTAAACAC
CATGGCCCCCTCCTTAGAGATTGCCAGCGAGTCCCCCCTCCGCTCTCTAG
TCAAAGCTTGCTCTTGGCGGCTTGTCGCTGCTCTGATTACCCTCAGTACT
TCCCTCTTCTTCTCACGCGATGCGAAAATGGCCGCATCCATCGTTTCCTC
AGATTTTCTGTCCAAAGCGGGGACTATGTACGCGGGCGAGCGACTATGGA
ACAAGGTGTCATGGGGCAAAGAAGCTAAAGCGGGAGATGCAGCTTCCCGA
TCGATCATTAAAGCTTTCGCCTGGCGGGCGTTCGCGATGGTGAACACTTT
GGTCATTTCCATCTTCTTTGCCAAGAGTGTTAAAATTGCCGGTCAAATTG
CCTCTACCGACACCATCATCAAGACGTCTCTCTACGTGGTGCACGAGCGT
ATCTGGTCCAAAATTGATTGGGGACGATCGTATGACGTGGAATACAACAT
TTAG

Synonyms

Publications