jgi.p|Nanoce1779_2|593667, mRNA_6074 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593667
Unique NamemRNA_6074
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length549
Alignment locationscaffold_14:461602..462150 +

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Properties
Property NameValue
TranscriptId593753
TrackFilteredModels2
ProteinId593667
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:461602..462150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593667gene_6074Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593667mRNA_6074-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6074CDS_6074Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6074 ID=mRNA_6074|Name=jgi.p|Nanoce1779_2|593667|organism=Nannochloropsis oceanica|type=mRNA|length=549bp
GGCAACGGAAAAGCGAATTGCCAGGCAAATGGCTCATTGGGTGCAGGCGC
GTTTGACGTTCTTTGTGGAGGTGGATCGACAGAGGCGACGAGGGGGAGGT
AATTGGGAGGAGATGGTGGGGGAACTGATGAGACTTTCCGCTTTGACAGA
GGGAGAGGAGGAGGAGGTTGAAACGTGTGTAGTTTGCGGGGGGGGCGTGC
CACTGGATCCGATGATGGGCTTGATGGCGATATGCGAGCAGGGACATGTC
TTGGGTAGGTGTATGGAGACGTTTACTTTGATCAGGACCCCGGAATATTG
GGAATGTCCCTTGTGTAGCTCGATGGCATGTCCTTCTTTTTCGGATGGTT
TCATAAAGACAAAAGAGGGACAGGATAAGGATGGATGGTTGAAAAGACCG
GCGTGGTTGCGGCCTTGGCATGGGCGGGGGATGACGTGCATGTACTGCCA
TGTCCCTTGCAATGTTGTAAATACGTAAATGGAAGATATATTAAAAGTCG
TCTTGGCTTGGCAAAAGTACAAAAGCGCATGTACGGCACTGAATAAACA
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protein sequence of jgi.p|Nanoce1779_2|593667

>mRNA_6074-protein ID=mRNA_6074-protein|Name=jgi.p|Nanoce1779_2|593667|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MAHWVQARLTFFVEVDRQRRRGGGNWEEMVGELMRLSALTEGEEEEVETC
VVCGGGVPLDPMMGLMAICEQGHVLGRCMETFTLIRTPEYWECPLCSSMA
CPSFSDGFIKTKEGQDKDGWLKRPAWLRPWHGRGMTCMYCHVPCNVVNT*
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mRNA from alignment at scaffold_14:461602..462150+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6074 ID=mRNA_6074|Name=jgi.p|Nanoce1779_2|593667|organism=Nannochloropsis oceanica|type=mRNA|length=549bp|location=Sequence derived from alignment at scaffold_14:461602..462150+ (Nannochloropsis oceanica)
GGCAACGGAAAAGCGAATTGCCAGGCAAATGGCTCATTGGGTGCAGGCGC
GTTTGACGTTCTTTGTGGAGGTGGATCGACAGAGGCGACGAGGGGGAGGT
AATTGGGAGGAGATGGTGGGGGAACTGATGAGACTTTCCGCTTTGACAGA
GGGAGAGGAGGAGGAGGTTGAAACGTGTGTAGTTTGCGGGGGGGGCGTGC
CACTGGATCCGATGATGGGCTTGATGGCGATATGCGAGCAGGGACATGTC
TTGGGTAGGTGTATGGAGACGTTTACTTTGATCAGGACCCCGGAATATTG
GGAATGTCCCTTGTGTAGCTCGATGGCATGTCCTTCTTTTTCGGATGGTT
TCATAAAGACAAAAGAGGGACAGGATAAGGATGGATGGTTGAAAAGACCG
GCGTGGTTGCGGCCTTGGCATGGGCGGGGGATGACGTGCATGTACTGCCA
TGTCCCTTGCAATGTTGTAAATACGTAAATGGAAGATATATTAAAAGTCG
TCTTGGCTTGGCAAAAGTACAAAAGCGCATGTACGGCACTGAATAAACA
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Coding sequence (CDS) from alignment at scaffold_14:461602..462150+

>mRNA_6074 ID=mRNA_6074|Name=jgi.p|Nanoce1779_2|593667|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_14:461602..462150+ (Nannochloropsis oceanica)
ATGGCTCATTGGGTGCAGGCGCGTTTGACGTTCTTTGTGGAGGTGGATCG
ACAGAGGCGACGAGGGGGAGGTAATTGGGAGGAGATGGTGGGGGAACTGA
TGAGACTTTCCGCTTTGACAGAGGGAGAGGAGGAGGAGGTTGAAACGTGT
GTAGTTTGCGGGGGGGGCGTGCCACTGGATCCGATGATGGGCTTGATGGC
GATATGCGAGCAGGGACATGTCTTGGGTAGGTGTATGGAGACGTTTACTT
TGATCAGGACCCCGGAATATTGGGAATGTCCCTTGTGTAGCTCGATGGCA
TGTCCTTCTTTTTCGGATGGTTTCATAAAGACAAAAGAGGGACAGGATAA
GGATGGATGGTTGAAAAGACCGGCGTGGTTGCGGCCTTGGCATGGGCGGG
GGATGACGTGCATGTACTGCCATGTCCCTTGCAATGTTGTAAATACGTAA
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Synonyms
Publications