|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 81179 |
| Track | FilteredModels2 |
| ProteinId | 81093 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:456974..458995 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6073 ID=mRNA_6073|Name=jgi.p|Nanoce1779_2|81093|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
GAAATCATGAGGATGAGGCTTCTCGCTGGTGTCGCGCGGCATTCTTGCTC
TGTTCCTGGACTTGTCTTCTCATCAGCCACTATTTTAATTCACACTTTCG
CCACTACAGGGAGAGCCTATACTCTGCTGCATTGCCCTGTAGGGAGAGCT
CAAGAAGTGGTCGTCGGTAGGAACCCGTCTCCACACCCTCACCATTTATT
GAGCTTCCCACCATCTCCTTCCCCTGCTGGCGGCCAGGCCACTCATTGGG
CATTGGCAATGGCAGCGGCCATGCCATGAACGACATACTGCTCCTCCCGT
GTGTGCCAAAGTACATCAACCTTTGGCAGAAATCGTACCTTTCCCAACCC
CCCCAATCTACACCCCCCACACATTCAGGTGGCCAGGCCACCCTCGTCCC
CGACGTCATTCCATTCCACTACTACAACCATGCGCGTCTGCGTCTTTGCC
TCCTCCAGCTCCCTCACGCCCGAGCCCTACCTCAAGGTTGCGCGGGAGCT
CGGAGAGGAAATTGCCAAGGCCGGCTACCTGTGCATCAACGGCGGGGGCA
AGAACGGATGTATGGGGGCGTTGAATGAAGGGGCTCGTGCATCAGGAGGC
AAGATTAAAACCGTCATCCACGGGAAGTGGATCGTCGACAAAATGGAGTT
TGAGGACGTTGACGAGCTCGTGGTGGCTCAAGGCAATAATTTGCAAGAAC
GCAAAAGATTGCTGTGGGAGACGTGTGACTGTGTGGTGGTCTTGCCAGGG
GGCACCGGCACTTGGGATGAATTGATGGAGGTGGCCTGCCACAACTCGGT
GGGTTTCGGCAAAATTCCTATCACTGTCATCAATGTCGATGGCTTCTATG
ACGGCATCATCGAGCAAATAGCCCGGGCTGCGAGCGATAAAATCCTTTAT
GCCACCCCTGACGACACCATGCATGTCGAGACAACCGTCAAAGGGGCTCT
CTCTTGGTCTGCACTAAAAGTGAAAGCCTTGAAAGAAGCAGGGGAAGCGA
CAGGTAGTGATGCGGTGGTTTTACAAGCGCGGACGACGACGTTCATCTTT
CAGAGGCGGCATTCGTTTTTAGTCGGTGTGTTTGTCGGGTTTGTGGGAGC
GGTGTTGACGGTAGGGGAGGCGGCCTTGTTAAGCCAAATGGTTAAAAAAA
GGCTGGCAGGCCGGCTGTCGTAAGATGAAAGAAGGTCGAGAGACAGAAAA
AGGAGGGATTAAGTCTTTTTGAAATACAATGAAAAGAAAGAAGGATAAGA
AGAACCCTAGGCTTGGCTAGCCAATGTTGTCCTATAGAAGTTCGACTTGG
AAACCACGATAACAAGAGTAAAGAATTTTTCAGCTACATTTTCATTAAAT
GTTTTGGCAAAGAACGTGGTGGCTTCCTGGGAAAGGATTGTGACCGCGGC
TGTGAGAAGTAGGAGCACACTTGACGTCACGATGAGTGATTGAAAGGAGA
CTCACTCACGATCGACGATCGACACTGCTGCCGATCCTCCGCGATTGACG
TTAATTGTGACCACAACGAGCCCACATGCACATTATAAATCCAAGAAGAC
GGCTTAAAAGGCTTCCTTGGCACGGTTCGTAGCCTCTTGGAGGACCACCT
CTTATCATTTCCCTCTGCCTTACTCTCAGCTGACCTCCCCGCCTT back to topprotein sequence of jgi.p|Nanoce1779_2|81093 >mRNA_6073-protein ID=mRNA_6073-protein|Name=jgi.p|Nanoce1779_2|81093|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MRVCVFASSSSLTPEPYLKVARELGEEIAKAGYLCINGGGKNGCMGALNE
GARASGGKIKTVIHGKWIVDKMEFEDVDELVVAQGNNLQERKRLLWETCD
CVVVLPGGTGTWDELMEVACHNSVGFGKIPITVINVDGFYDGIIEQIARA
ASDKILYATPDDTMHVETTVKGALSWSALKVKALKEAGEATGSDAVVLQA
RTTTFIFQRRHSFLVGVFVGFVGAVLTVGEAALLSQMVKKRLAGRLS* back to topmRNA from alignment at scaffold_14:456974..458995- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6073 ID=mRNA_6073|Name=jgi.p|Nanoce1779_2|81093|organism=Nannochloropsis oceanica|type=mRNA|length=2022bp|location=Sequence derived from alignment at scaffold_14:456974..458995- (Nannochloropsis oceanica)
GAAATCATGAGGATGAGGCTTCTCGCTGGTGTCGCGCGGCATTCTTGCTC
TGTTCCTGGACTTGTCTTCTCATCAGCCACTATTTTAATTCACACTTTCG
CCACTACAGGGAGAGCCTATACTCTGCTGCATTGCCCTGTAGGGAGAGCT
CAAGAAGTGGTCGTCGGTAGGAACCCGTCTCCACACCCTCACCATTTATT
GAGCTTCCCACCATCTCCTTCCCCTGCTGGCGGCCAGGCCACTCATTGGG
CATTGGCAATGGCAGCGGCCATGCCATGAACGACATACTGCTCCTCCCGT
GTGTGCCAAAGTACATCAACCTTTGGCAGAAATCGTACCTTTCCCAACCC
CCCCAATCTACACCCCCCACACATTCAGGTGGCCAGGCCACCCTCGTCCC
CGACGTCATTCCATTCCACTACTACAACCATGCGCGTCTGCGTCTTTGCC
TCCTCCAGCTCCCTCACGCCCGAGCCCTACCTCAAGGTACGTACGATCGA
AAAAAGTAAAAAAAAGCGTACACAGACTCTGTGCTTACATTCGTCCTTTT
GCCCTTTCCTTTTTCCTTCCCCAAGGTTGCGCGGGAGCTCGGAGAGGAAA
TTGCCAAGGCCGGCTACCTGTGCATCAACGGCGGGGGCAAGAACGGATGT
ATGGGGGCGTTGAATGAAGGGGCTCGTGCATCAGGAGGCAAGGTACGCCA
TTTGTAGAATCTAGCTCCAATAACTGACGCTCCGCTCCTGGGCAGGCTAG
CCCACCATGCTCCTGCCTGAACATCCTATCCTCTCGTCTACATCAAGCAC
ACACGTCCTCTCTTATCCCCCTTTACCCCTTCCTGTTAACTTTAGATTAA
AACCGTCATCCACGGGAAGTGGATCGTCGACAAAATGGAGTTTGAGGACG
TTGACGAGCTCGTGGTGGCTCAAGGCAATAATTTGCAAGAACGCAAAAGA
TTGCTGTGGGAGACGTGTGACTGTGTGGTGGTCTTGCCAGGGGGCACCGG
CACTTGGGATGAATTGATGGAGGTTAGAAAGGAGGGAGGAAGAGGAAAAA
TGGGGAGGGGGGACAGGGGAAAGGAGTACCTTTTCTATTTTACCTATTTC
ATTGCAAATTTCTTTAACCATCTTTTCCTTGTCCCTATTCCTCCTCATCA
ATCAAAGGTGGCCTGCCACAACTCGGTGGGTTTCGGCAAAATTCCTATCA
CTGTCATCAATGTCGATGGCTTCTATGACGGCATCATCGAGCAAATAGCC
CGGGCTGCGAGCGATAAAATCCTTTATGCCACCCCTGACGACACCATGCA
TGTCGAGACAACCGTCAAAGGGGCTCTCTCTTGGTCTGCACTAAAAGTGA
AAGCCTTGAAAGAAGCAGGGGAAGCGACAGGTAGTGATGCGGTGGTTTTA
CAAGCGCGGACGACGACGTTCATCTTTCAGAGGCGGCATTCGTTTTTAGT
CGGTGTGTTTGTCGGGTTTGTGGGAGCGGTGTTGACGGTAGGGGAGGCGG
CCTTGTTAAGCCAAATGGTTAAAAAAAGGCTGGCAGGCCGGCTGTCGTAA
GATGAAAGAAGGTCGAGAGACAGAAAAAGGAGGGATTAAGTCTTTTTGAA
ATACAATGAAAAGAAAGAAGGATAAGAAGAACCCTAGGCTTGGCTAGCCA
ATGTTGTCCTATAGAAGTTCGACTTGGAAACCACGATAACAAGAGTAAAG
AATTTTTCAGCTACATTTTCATTAAATGTTTTGGCAAAGAACGTGGTGGC
TTCCTGGGAAAGGATTGTGACCGCGGCTGTGAGAAGTAGGAGCACACTTG
ACGTCACGATGAGTGATTGAAAGGAGACTCACTCACGATCGACGATCGAC
ACTGCTGCCGATCCTCCGCGATTGACGTTAATTGTGACCACAACGAGCCC
ACATGCACATTATAAATCCAAGAAGACGGCTTAAAAGGCTTCCTTGGCAC
GGTTCGTAGCCTCTTGGAGGACCACCTCTTATCATTTCCCTCTGCCTTAC
TCTCAGCTGACCTCCCCGCCTT back to topCoding sequence (CDS) from alignment at scaffold_14:456974..458995- >mRNA_6073 ID=mRNA_6073|Name=jgi.p|Nanoce1779_2|81093|organism=Nannochloropsis oceanica|type=CDS|length=2976bp|location=Sequence derived from alignment at scaffold_14:456974..458995- (Nannochloropsis oceanica)
GTGGCCTGCCACAACTCGGTGGGTTTCGGCAAAATTCCTATCACTGTCAT
CAATGTCGATGGCTTCTATGACGGCATCATCGAGCAAATAGCCCGGGCTG
CGAGCGATAAAATCCTTTATGCCACCCCTGACGACACCATGCATGTCGAG
ACAACCGTCAAAGGGGCTCTCTCTTGGTCTGCACTAAAAGTGAAAGCCTT
GAAAGAAGCAGGGGAAGCGACAGGTAGTGATGCGGTGGTTTTACAAGCGC
GGACGACGACGTTCATCTTTCAGAGGCGGCATTCGTTTTTAGTCGGTGTG
TTTGTCGGGTTTGTGGGAGCGGTGTTGACGGTAGGGGAGGCGGCCTTGTT
AAGCCAAATGGTTAAAAAAAGGCTGGCAGGCCGGCTGTCGTAAATTAAAA
CCGTCATCCACGGGAAGTGGATCGTCGACAAAATGGAGTTTGAGGACGTT
GACGAGCTCGTGGTGGCTCAAGGCAATAATTTGCAAGAACGCAAAAGATT
GCTGTGGGAGACGTGTGACTGTGTGGTGGTCTTGCCAGGGGGCACCGGCA
CTTGGGATGAATTGATGGAGGTTGCGCGGGAGCTCGGAGAGGAAATTGCC
AAGGCCGGCTACCTGTGCATCAACGGCGGGGGCAAGAACGGATGTATGGG
GGCGTTGAATGAAGGGGCTCGTGCATCAGGAGGCAAGATGCGCGTCTGCG
TCTTTGCCTCCTCCAGCTCCCTCACGCCCGAGCCCTACCTCAAGGTGGCC
TGCCACAACTCGGTGGGTTTCGGCAAAATTCCTATCACTGTCATCAATGT
CGATGGCTTCTATGACGGCATCATCGAGCAAATAGCCCGGGCTGCGAGCG
ATAAAATCCTTTATGCCACCCCTGACGACACCATGCATGTCGAGACAACC
GTCAAAGGGGCTCTCTCTTGGTCTGCACTAAAAGTGAAAGCCTTGAAAGA
AGCAGGGGAAGCGACAGGTAGTGATGCGGTGGTTTTACAAGCGCGGACGA
CGACGTTCATCTTTCAGAGGCGGCATTCGTTTTTAGTCGGTGTGTTTGTC
GGGTTTGTGGGAGCGGTGTTGACGGTAGGGGAGGCGGCCTTGTTAAGCCA
AATGGTTAAAAAAAGGCTGGCAGGCCGGCTGTCGTAAATTAAAACCGTCA
TCCACGGGAAGTGGATCGTCGACAAAATGGAGTTTGAGGACGTTGACGAG
CTCGTGGTGGCTCAAGGCAATAATTTGCAAGAACGCAAAAGATTGCTGTG
GGAGACGTGTGACTGTGTGGTGGTCTTGCCAGGGGGCACCGGCACTTGGG
ATGAATTGATGGAGGTTGCGCGGGAGCTCGGAGAGGAAATTGCCAAGGCC
GGCTACCTGTGCATCAACGGCGGGGGCAAGAACGGATGTATGGGGGCGTT
GAATGAAGGGGCTCGTGCATCAGGAGGCAAGATGCGCGTCTGCGTCTTTG
CCTCCTCCAGCTCCCTCACGCCCGAGCCCTACCTCAAGGTGGCCTGCCAC
AACTCGGTGGGTTTCGGCAAAATTCCTATCACTGTCATCAATGTCGATGG
CTTCTATGACGGCATCATCGAGCAAATAGCCCGGGCTGCGAGCGATAAAA
TCCTTTATGCCACCCCTGACGACACCATGCATGTCGAGACAACCGTCAAA
GGGGCTCTCTCTTGGTCTGCACTAAAAGTGAAAGCCTTGAAAGAAGCAGG
GGAAGCGACAGGTAGTGATGCGGTGGTTTTACAAGCGCGGACGACGACGT
TCATCTTTCAGAGGCGGCATTCGTTTTTAGTCGGTGTGTTTGTCGGGTTT
GTGGGAGCGGTGTTGACGGTAGGGGAGGCGGCCTTGTTAAGCCAAATGGT
TAAAAAAAGGCTGGCAGGCCGGCTGTCGTAAATTAAAACCGTCATCCACG
GGAAGTGGATCGTCGACAAAATGGAGTTTGAGGACGTTGACGAGCTCGTG
GTGGCTCAAGGCAATAATTTGCAAGAACGCAAAAGATTGCTGTGGGAGAC
GTGTGACTGTGTGGTGGTCTTGCCAGGGGGCACCGGCACTTGGGATGAAT
TGATGGAGGTTGCGCGGGAGCTCGGAGAGGAAATTGCCAAGGCCGGCTAC
CTGTGCATCAACGGCGGGGGCAAGAACGGATGTATGGGGGCGTTGAATGA
AGGGGCTCGTGCATCAGGAGGCAAGATGCGCGTCTGCGTCTTTGCCTCCT
CCAGCTCCCTCACGCCCGAGCCCTACCTCAAGGTGGCCTGCCACAACTCG
GTGGGTTTCGGCAAAATTCCTATCACTGTCATCAATGTCGATGGCTTCTA
TGACGGCATCATCGAGCAAATAGCCCGGGCTGCGAGCGATAAAATCCTTT
ATGCCACCCCTGACGACACCATGCATGTCGAGACAACCGTCAAAGGGGCT
CTCTCTTGGTCTGCACTAAAAGTGAAAGCCTTGAAAGAAGCAGGGGAAGC
GACAGGTAGTGATGCGGTGGTTTTACAAGCGCGGACGACGACGTTCATCT
TTCAGAGGCGGCATTCGTTTTTAGTCGGTGTGTTTGTCGGGTTTGTGGGA
GCGGTGTTGACGGTAGGGGAGGCGGCCTTGTTAAGCCAAATGGTTAAAAA
AAGGCTGGCAGGCCGGCTGTCGTAAATTAAAACCGTCATCCACGGGAAGT
GGATCGTCGACAAAATGGAGTTTGAGGACGTTGACGAGCTCGTGGTGGCT
CAAGGCAATAATTTGCAAGAACGCAAAAGATTGCTGTGGGAGACGTGTGA
CTGTGTGGTGGTCTTGCCAGGGGGCACCGGCACTTGGGATGAATTGATGG
AGGTTGCGCGGGAGCTCGGAGAGGAAATTGCCAAGGCCGGCTACCTGTGC
ATCAACGGCGGGGGCAAGAACGGATGTATGGGGGCGTTGAATGAAGGGGC
TCGTGCATCAGGAGGCAAGATGCGCGTCTGCGTCTTTGCCTCCTCCAGCT
CCCTCACGCCCGAGCCCTACCTCAAG back to top
|