jgi.p|Nanoce1779_2|529889, mRNA_6072 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529889
Unique NamemRNA_6072
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length963
Alignment locationscaffold_14:455897..456859 -

Link to JBrowse

Properties
Property NameValue
TranscriptId529975
TrackFilteredModels2
ProteinId529889
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:455897..456859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529889gene_6072Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6072CDS_6072Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529889mRNA_6072-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6072 ID=mRNA_6072|Name=jgi.p|Nanoce1779_2|529889|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGCTGCGCAAAATCGTGCCAGAACTGCCGGAAGACTTGGAGCAGCTCCT
TGGGGCCATTGCCCAGGCCTCCCACCGTATTGCAGACACGCTGAGAACTG
GCGACTCCCACACCAAGAGCGGCATTGAAAACACTTTTGGGGATGAACAA
TTGCATTTGGACGTGGTTACCAACGAGATTTGTTTCGAAGAGCTTCGGGC
GTGTGGCCTCGTGCACATTGCCAGTAGCGAGGAGACACCGACGGAGGAGG
ACTTGGGCGGGGCCAACTCAGGGGCAGGGGACGGGTTTTCCGTTTCCTTT
GATCCGCTGGATGGGAGTAGCATCATCGATACCAATTTCTCGGTTGGTTC
TATTTTTGGGATCTGGCCTGGAAGAGGACTGTTGGGACGGACGGGGCGAG
AGCAATGCTCTTCCGTGTTGACGATCTACGGCCCGCGTGTCACGTTGGTC
ATTGCCCTGCCTCACGCTGCTGGGGGGCCTCGCTCGGTGCAACTCATGCT
TCAACATGATCGTACTTGGGAGGTAGTCCACGAAACCCTGACAGTGGCAC
CAGCAGGGAAAGTCTTCGCGCCAGGCAATTTAAGGGCGACGGCGGATAAT
GCAGCTTACAAGCGGTTGGTTGATTATTGGATTTCGGAACGATACACCTT
GCGCTACACTGGTGGCCTAGTCCCGGACGTCTATCACATTTTAATCAAAG
GAAAAGGGGTTGTGACTAACGTGGTGTCAGCTGCCGCCAAGGCCAAGCTT
CGTTTGCTCTACGAGGCAGCACCCATTGCCCTGGTGATGGAGTGTGCCGG
GGCTGCCTCTTGCACGGCTCCCGGGCCGAATGGGGAGCACCCTGAACCGA
TTTCAATATTGGACTTGGTCGTCACGGGGTTGGAGTTTAAGTGTGGTGTG
GCGTATGGAGGGGTGGAGGAGGTGGAAACCTTCAAGAAGTTTCTCTACCC
GGCGAAGGAATAG
back to top

protein sequence of jgi.p|Nanoce1779_2|529889

>mRNA_6072-protein ID=mRNA_6072-protein|Name=jgi.p|Nanoce1779_2|529889|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MLRKIVPELPEDLEQLLGAIAQASHRIADTLRTGDSHTKSGIENTFGDEQ
LHLDVVTNEICFEELRACGLVHIASSEETPTEEDLGGANSGAGDGFSVSF
DPLDGSSIIDTNFSVGSIFGIWPGRGLLGRTGREQCSSVLTIYGPRVTLV
IALPHAAGGPRSVQLMLQHDRTWEVVHETLTVAPAGKVFAPGNLRATADN
AAYKRLVDYWISERYTLRYTGGLVPDVYHILIKGKGVVTNVVSAAAKAKL
RLLYEAAPIALVMECAGAASCTAPGPNGEHPEPISILDLVVTGLEFKCGV
AYGGVEEVETFKKFLYPAKE*
back to top

mRNA from alignment at scaffold_14:455897..456859-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6072 ID=mRNA_6072|Name=jgi.p|Nanoce1779_2|529889|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at scaffold_14:455897..456859- (Nannochloropsis oceanica)
ATGCTGCGCAAAATCGTGCCAGAACTGCCGGAAGACTTGGAGCAGCTCCT
TGGGGCCATTGCCCAGGCCTCCCACCGTATTGCAGACACGCTGAGAACTG
GCGACTCCCACACCAAGAGCGGCATTGAAAACACTTTTGGGGATGAACAA
TTGCATTTGGACGTGGTTACCAACGAGATTTGTTTCGAAGAGCTTCGGGC
GTGTGGCCTCGTGCACATTGCCAGTAGCGAGGAGACACCGACGGAGGAGG
ACTTGGGCGGGGCCAACTCAGGGGCAGGGGACGGGTTTTCCGTTTCCTTT
GATCCGCTGGATGGGAGTAGCATCATCGATACCAATTTCTCGGTTGGTTC
TATTTTTGGGATCTGGCCTGGAAGAGGACTGTTGGGACGGACGGGGCGAG
AGCAATGCTCTTCCGTGTTGACGATCTACGGCCCGCGTGTCACGTTGGTC
ATTGCCCTGCCTCACGCTGCTGGGGGGCCTCGCTCGGTGCAACTCATGCT
TCAACATGATCGTACTTGGGAGGTAGTCCACGAAACCCTGACAGTGGCAC
CAGCAGGGAAAGTCTTCGCGCCAGGCAATTTAAGGGCGACGGCGGATAAT
GCAGCTTACAAGCGGTTGGTTGATTATTGGATTTCGGAACGATACACCTT
GCGCTACACTGGTGGCCTAGTCCCGGACGTCTATCACATTTTAATCAAAG
GAAAAGGGGTTGTGACTAACGTGGTGTCAGCTGCCGCCAAGGCCAAGCTT
CGTTTGCTCTACGAGGCAGCACCCATTGCCCTGGTGATGGAGTGTGCCGG
GGCTGCCTCTTGCACGGCTCCCGGGCCGAATGGGGAGCACCCTGAACCGA
TTTCAATATTGGACTTGGTCGTCACGGGGTTGGAGTTTAAGTGTGGTGTG
GCGTATGGAGGGGTGGAGGAGGTGGAAACCTTCAAGAAGTTTCTCTACCC
GGCGAAGGAATAG
back to top

Coding sequence (CDS) from alignment at scaffold_14:455897..456859-

>mRNA_6072 ID=mRNA_6072|Name=jgi.p|Nanoce1779_2|529889|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_14:455897..456859- (Nannochloropsis oceanica)
ATGCTGCGCAAAATCGTGCCAGAACTGCCGGAAGACTTGGAGCAGCTCCT
TGGGGCCATTGCCCAGGCCTCCCACCGTATTGCAGACACGCTGAGAACTG
GCGACTCCCACACCAAGAGCGGCATTGAAAACACTTTTGGGGATGAACAA
TTGCATTTGGACGTGGTTACCAACGAGATTTGTTTCGAAGAGCTTCGGGC
GTGTGGCCTCGTGCACATTGCCAGTAGCGAGGAGACACCGACGGAGGAGG
ACTTGGGCGGGGCCAACTCAGGGGCAGGGGACGGGTTTTCCGTTTCCTTT
GATCCGCTGGATGGGAGTAGCATCATCGATACCAATTTCTCGGTTGGTTC
TATTTTTGGGATCTGGCCTGGAAGAGGACTGTTGGGACGGACGGGGCGAG
AGCAATGCTCTTCCGTGTTGACGATCTACGGCCCGCGTGTCACGTTGGTC
ATTGCCCTGCCTCACGCTGCTGGGGGGCCTCGCTCGGTGCAACTCATGCT
TCAACATGATCGTACTTGGGAGGTAGTCCACGAAACCCTGACAGTGGCAC
CAGCAGGGAAAGTCTTCGCGCCAGGCAATTTAAGGGCGACGGCGGATAAT
GCAGCTTACAAGCGGTTGGTTGATTATTGGATTTCGGAACGATACACCTT
GCGCTACACTGGTGGCCTAGTCCCGGACGTCTATCACATTTTAATCAAAG
GAAAAGGGGTTGTGACTAACGTGGTGTCAGCTGCCGCCAAGGCCAAGCTT
CGTTTGCTCTACGAGGCAGCACCCATTGCCCTGGTGATGGAGTGTGCCGG
GGCTGCCTCTTGCACGGCTCCCGGGCCGAATGGGGAGCACCCTGAACCGA
TTTCAATATTGGACTTGGTCGTCACGGGGTTGGAGTTTAAGTGTGGTGTG
GCGTATGGAGGGGTGGAGGAGGTGGAAACCTTCAAGAAGTTTCTCTACCC
GGCGAAGGAATAG
back to top
Synonyms
Publications