jgi.p|Nanoce1779_2|593656, mRNA_6071 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593656
Unique NamemRNA_6071
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_14:454964..455976 +

Link to JBrowse

Properties
Property NameValue
TranscriptId593742
TrackFilteredModels2
ProteinId593656
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:454964..455976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593656gene_6071Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593656mRNA_6071-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6071CDS_6071Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6071 ID=mRNA_6071|Name=jgi.p|Nanoce1779_2|593656|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
AACAGGACAGGCTGGGAAATTTGCTTCCTCAAAATTGCGCCATCTTTTTC
CTCCCCCTCCTTCATCGTCGCTCATGTGGCCCCCTAGCAGCAGCAGCAGT
CCTAGTACCGCGGCCCTGACCGTCCTCCTCCTCCTCCCCGTCATGCTCCT
GTCCTTCCAATCTTCCACGCACGCGTTTAACGTCCTTTCGATCAGCCAGC
AGTCACCGCCTCTCCGAGAGAGGACATTGCAAACCTACCCGCAGCAAAAC
GATGATCTGGACGGAAGCAGCAGAAGCAGTAGCAGCAGCACGAACCAGCA
CCTTGGGCTGCTTGGCCGCGTCTCTCCACGGACGCGCACGTTGGAGAATA
TTCGATGTCCCCAGTGTCTCTCTGTGGACGACGAGGTCTTTCTCGTTTCC
TCTCCTTCAGTACCATCACCAAAAGGGGACAGTAGTAGTACGTGGATATA
CCGTGAAGGCGGGGAGGAGAGAGGCAGGGAGGTATGGCGACCATCACCAG
GCACCATTCCACCGCACATATCGATAAGTGAGTTTACCTGGCGGCTTTAC
AGCGACAAGCCTTGGGTGAATGAGGGGATGGGAGAGCGAAAGAGTGAAGG
AGGGCAGAGAACGAAGTAATTGGGTCGCTGCTTTGTAGAGTAATCAATTG
TTAGGTAAATGTGTGTCTTTGTTGTACCTCAGGTGGCTGTAAAGATAAGA
AAGGAAGAGGAGAAGGAGTGGATAGAGGACGTAAAATGACGTGAGAACAG
GAGAGATGCCATGTCACACAAATGTGTGTTAGACCACGACGATTAATTTA
ACTACCATCAAGCAGTACATCGTTGCCTGCCCACAGTGGCCGCACCCAGT
TTTACTTCCTTTCAACTTAACAGTCGTACGCATGCATATCTCGCCCCTTC
TTCCATGCCTCCTCTCCACCCCCGCTCGGCCTTCTATTCCTTCGCCGGGT
AGAGAAACTTCTTGAAGGTTTCCACCTCCTCCACCCCTCCATACGCCACA
CCACACTTAAACT
back to top

protein sequence of jgi.p|Nanoce1779_2|593656

>mRNA_6071-protein ID=mRNA_6071-protein|Name=jgi.p|Nanoce1779_2|593656|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MWPPSSSSSPSTAALTVLLLLPVMLLSFQSSTHAFNVLSISQQSPPLRER
TLQTYPQQNDDLDGSSRSSSSSTNQHLGLLGRVSPRTRTLENIRCPQCLS
VDDEVFLVSSPSVPSPKGDSSSTWIYREGGEERGREVWRPSPGTIPPHIS
ISEFTWRLYSDKPWVNEGMGERKSEGGQRTK*
back to top

mRNA from alignment at scaffold_14:454964..455976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6071 ID=mRNA_6071|Name=jgi.p|Nanoce1779_2|593656|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp|location=Sequence derived from alignment at scaffold_14:454964..455976+ (Nannochloropsis oceanica)
AACAGGACAGGCTGGGAAATTTGCTTCCTCAAAATTGCGCCATCTTTTTC
CTCCCCCTCCTTCATCGTCGCTCATGTGGCCCCCTAGCAGCAGCAGCAGT
CCTAGTACCGCGGCCCTGACCGTCCTCCTCCTCCTCCCCGTCATGCTCCT
GTCCTTCCAATCTTCCACGCACGCGTTTAACGTCCTTTCGATCAGCCAGC
AGTCACCGCCTCTCCGAGAGAGGACATTGCAAACCTACCCGCAGCAAAAC
GATGATCTGGACGGAAGCAGCAGAAGCAGTAGCAGCAGCACGAACCAGCA
CCTTGGGCTGCTTGGCCGCGTCTCTCCACGGACGCGCACGTTGGAGAATA
TTCGATGTCCCCAGTGTCTCTCTGTGGACGACGAGGTCTTTCTCGTTTCC
TCTCCTTCAGTACCATCACCAAAAGGGGACAGTAGTAGTACGTGGATATA
CCGTGAAGGCGGGGAGGAGAGAGGCAGGGAGGTATGGCGACCATCACCAG
GCACCATTCCACCGCACATATCGATAAGTGAGTTTACCTGGCGGCTTTAC
AGCGACAAGCCTTGGGTGAATGAGGGGATGGGAGAGCGAAAGAGTGAAGG
AGGGCAGAGAACGAAGTAATTGGGTCGCTGCTTTGTAGAGTAATCAATTG
TTAGGTAAATGTGTGTCTTTGTTGTACCTCAGGTGGCTGTAAAGATAAGA
AAGGAAGAGGAGAAGGAGTGGATAGAGGACGTAAAATGACGTGAGAACAG
GAGAGATGCCATGTCACACAAATGTGTGTTAGACCACGACGATTAATTTA
ACTACCATCAAGCAGTACATCGTTGCCTGCCCACAGTGGCCGCACCCAGT
TTTACTTCCTTTCAACTTAACAGTCGTACGCATGCATATCTCGCCCCTTC
TTCCATGCCTCCTCTCCACCCCCGCTCGGCCTTCTATTCCTTCGCCGGGT
AGAGAAACTTCTTGAAGGTTTCCACCTCCTCCACCCCTCCATACGCCACA
CCACACTTAAACT
back to top

Coding sequence (CDS) from alignment at scaffold_14:454964..455976+

>mRNA_6071 ID=mRNA_6071|Name=jgi.p|Nanoce1779_2|593656|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_14:454964..455976+ (Nannochloropsis oceanica)
ATGTGGCCCCCTAGCAGCAGCAGCAGTCCTAGTACCGCGGCCCTGACCGT
CCTCCTCCTCCTCCCCGTCATGCTCCTGTCCTTCCAATCTTCCACGCACG
CGTTTAACGTCCTTTCGATCAGCCAGCAGTCACCGCCTCTCCGAGAGAGG
ACATTGCAAACCTACCCGCAGCAAAACGATGATCTGGACGGAAGCAGCAG
AAGCAGTAGCAGCAGCACGAACCAGCACCTTGGGCTGCTTGGCCGCGTCT
CTCCACGGACGCGCACGTTGGAGAATATTCGATGTCCCCAGTGTCTCTCT
GTGGACGACGAGGTCTTTCTCGTTTCCTCTCCTTCAGTACCATCACCAAA
AGGGGACAGTAGTAGTACGTGGATATACCGTGAAGGCGGGGAGGAGAGAG
GCAGGGAGGTATGGCGACCATCACCAGGCACCATTCCACCGCACATATCG
ATAAGTGAGTTTACCTGGCGGCTTTACAGCGACAAGCCTTGGGTGAATGA
GGGGATGGGAGAGCGAAAGAGTGAAGGAGGGCAGAGAACGAAGTAA
back to top
Synonyms
Publications