jgi.p|Nanoce1779_2|593653, mRNA_6070 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593653
Unique NamemRNA_6070
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length563
Alignment locationscaffold_14:453381..454532 -

Link to JBrowse

Properties
Property NameValue
TranscriptId593739
TrackFilteredModels2
ProteinId593653
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:453381..454532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593653gene_6070Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593653mRNA_6070-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6070CDS_6070Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6070 ID=mRNA_6070|Name=jgi.p|Nanoce1779_2|593653|organism=Nannochloropsis oceanica|type=mRNA|length=563bp
ACAGGCTTCGTCTACATACACGGGTTGTTGTATTCGCTCGAGGAAAAATG
GTCGCAGGCAAAATTAAGGCCAAGGAACTCCGTACAAAGCAAAAGGCCGA
CCTGGTAAAGCAACTGGATGAGCTCAAGAAGGAACTCTCTGAGCTGCGCG
TCGCCAAGGTCACTGGTGGGGCTGCCAGCAAGCTAGCTAAGATCAAGATC
GTCCGCAAGTCCATCGCCCGCGTCCTGACCGTCTACAACCAAACCCAGAA
GTCCAAGCTGCGTGAGAAATTTGCCGGCTCGAAGTACATGCCTTTGGATC
TGCGCAGGAAGAAGACGCGTGCCATCCGACGACGATTGACCAAGCATGAG
CAAGGCCTCAAGACCGTGCGGGCCGTGAAGAGGGAGCAGGCGGCGCCCAA
GCGTCGATATGCTCTGAAGGCCTAAGCGGGATGAGGGAAGGAAGAGAGGA
GGGAAGGAGGGAGGGAAGGAGGGAGGGAGGAGTTTCTTGGTTCTTTGTAG
GGGATGTGGATGACAGAAATTAAGAGTGAAATTGCATTCATACGAGGACC
AAGGGTTTCGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|593653

>mRNA_6070-protein ID=mRNA_6070-protein|Name=jgi.p|Nanoce1779_2|593653|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MVAGKIKAKELRTKQKADLVKQLDELKKELSELRVAKVTGGAASKLAKIK
IVRKSIARVLTVYNQTQKSKLREKFAGSKYMPLDLRRKKTRAIRRRLTKH
EQGLKTVRAVKREQAAPKRRYALKA*
back to top

mRNA from alignment at scaffold_14:453381..454532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6070 ID=mRNA_6070|Name=jgi.p|Nanoce1779_2|593653|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp|location=Sequence derived from alignment at scaffold_14:453381..454532- (Nannochloropsis oceanica)
ACAGGCTTCGTCTACATACACGGGTTGTTGTATTCGCTCGAGGAAAAATG
GTCGCAGGTAAGCCTTTAATTTACAAGGGCGGGGTAGGTTTCCCTCACCC
TGCCCCCCCCCCCCCCCCCAAACCCATGCTTGCTTGCCATACGATTAGAG
AGACCAGGCGTACCTGGAGGCAGCCATTAAGCACCTCATTGCGTTTCTGT
GTAGTGTGCTTCTTTATTCATCCCCCCGTTGTCATCTCCGTCGTGTTTTT
CGAGGCGTGCGAGCTCTCATAGACGATGACTGATGACTCTCATGCTGGCT
GAACATGAATAGTGCATCTCCACGTGTTCCACCGCCTGTAGTACCACGAC
TCGTAGCTCTTATCTTGCCTCTCCTTCCATCTCATTGTCTGCCTGACCCG
TTACTCCTTACCTGACCACCGCCCTTTCATCCCTCCCGCCCTCCCCTTCT
CCCTCCTACCTGTGCCCTTCCTCCCAGGCAAAATTAAGGCCAAGGAACTC
CGTACAAAGCAAAAGGCCGACCTGGTAAAGCAACTGGATGAGCTCAAGAA
GGAACTCTCTGAGCTGCGCGTCGCCAAGGTCACTGGTGGGGCTGCCAGCA
AGCTAGCTAAGATCAAGGTACGCTCTGAACCAAGCAGCTGCTAGAAGAGC
GATGGGGACGGACAAGAGAGAATAAGGCCGGAATGGTAGATGCCAGCGAT
AGTAGCAGCAGCGTTAGAGCTTCAATATTGTCACAAGCCATCAGTATTTA
GCTTCTCCCCCTCTCTTATCCCTGCCCATCACACAGATCGTCCGCAAGTC
CATCGCCCGCGTCCTGACCGTCTACAACCAAACCCAGAAGTCCAAGCTGC
GTGAGAAATTTGCCGGCTCGAAGTACATGCCTTTGGATCTGCGCAGGAAG
AAGACGCGTGCCATCCGACGACGATTGACCAAGCATGAGCAAGGCCTCAA
GACCGTGCGGGCCGTGAAGAGGGAGCAGGCGGCGCCCAAGCGTCGATATG
CTCTGAAGGCCTAAGCGGGATGAGGGAAGGAAGAGAGGAGGGAAGGAGGG
AGGGAAGGAGGGAGGGAGGAGTTTCTTGGTTCTTTGTAGGGGATGTGGAT
GACAGAAATTAAGAGTGAAATTGCATTCATACGAGGACCAAGGGTTTCGG
GG
back to top

Coding sequence (CDS) from alignment at scaffold_14:453381..454532-

>mRNA_6070 ID=mRNA_6070|Name=jgi.p|Nanoce1779_2|593653|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_14:453381..454532- (Nannochloropsis oceanica)
ATCGTCCGCAAGTCCATCGCCCGCGTCCTGACCGTCTACAACCAAACCCA
GAAGTCCAAGCTGCGTGAGAAATTTGCCGGCTCGAAGTACATGCCTTTGG
ATCTGCGCAGGAAGAAGACGCGTGCCATCCGACGACGATTGACCAAGCAT
GAGCAAGGCCTCAAGACCGTGCGGGCCGTGAAGAGGGAGCAGGCGGCGCC
CAAGCGTCGATATGCTCTGAAGGCCTAAGCAAAATTAAGGCCAAGGAACT
CCGTACAAAGCAAAAGGCCGACCTGGTAAAGCAACTGGATGAGCTCAAGA
AGGAACTCTCTGAGCTGCGCGTCGCCAAGGTCACTGGTGGGGCTGCCAGC
AAGCTAGCTAAGATCAAGATGGTCGCAGATCGTCCGCAAGTCCATCGCCC
GCGTCCTGACCGTCTACAACCAAACCCAGAAGTCCAAGCTGCGTGAGAAA
TTTGCCGGCTCGAAGTACATGCCTTTGGATCTGCGCAGGAAGAAGACGCG
TGCCATCCGACGACGATTGACCAAGCATGAGCAAGGCCTCAAGACCGTGC
GGGCCGTGAAGAGGGAGCAGGCGGCGCCCAAGCGTCGATATGCTCTGAAG
GCCTAAGCAAAATTAAGGCCAAGGAACTCCGTACAAAGCAAAAGGCCGAC
CTGGTAAAGCAACTGGATGAGCTCAAGAAGGAACTCTCTGAGCTGCGCGT
CGCCAAGGTCACTGGTGGGGCTGCCAGCAAGCTAGCTAAGATCAAGATGG
TCGCAGATCGTCCGCAAGTCCATCGCCCGCGTCCTGACCGTCTACAACCA
AACCCAGAAGTCCAAGCTGCGTGAGAAATTTGCCGGCTCGAAGTACATGC
CTTTGGATCTGCGCAGGAAGAAGACGCGTGCCATCCGACGACGATTGACC
AAGCATGAGCAAGGCCTCAAGACCGTGCGGGCCGTGAAGAGGGAGCAGGC
GGCGCCCAAGCGTCGATATGCTCTGAAGGCCTAAGCAAAATTAAGGCCAA
GGAACTCCGTACAAAGCAAAAGGCCGACCTGGTAAAGCAACTGGATGAGC
TCAAGAAGGAACTCTCTGAGCTGCGCGTCGCCAAGGTCACTGGTGGGGCT
GCCAGCAAGCTAGCTAAGATCAAGATGGTCGCAG
back to top
Synonyms
Publications