jgi.p|Nanoce1779_2|551358, mRNA_607 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|551358
Unique Name	mRNA_607
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1031
Alignment location	scaffold_3:1520101..1521356 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	551444
Track	FilteredModels2
ProteinId	551358

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1520101..1521356 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551358	gene_607	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551358	mRNA_607-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_607	CDS_607	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1520101..1521356+
coding sequence from alignment at scaffold_3:1520101..1521356+

mRNA sequence

>mRNA_607 ID=mRNA_607|Name=jgi.p|Nanoce1779_2|551358|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
CGTGGGCCAGGAGGTCGACATCTCCTTGTTGCACTATATGACGCTTCCCA
CACCCACAACCCACAGAGACCACTGGCTGTGGACAAAGAGGGAGAAATAT
GACAGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCGAGCAGAATC
CCCCCCCAGCACTGTCCTATGAAGCGCTCCTCGAGGAAAATTTACGTCTC
AAGGAACAGCTCCAGCAGCTGCAGCAACAACATCAACGACAACAATCGCA
GCAGCAGCAGCAGCAGCAGCAGCGAAAAAAAACTCCATCTACTCCCCTTT
CCTGTTCCTCCTCCGTCCCTCTCCCCCCTCTCCCGCCTGTCCACCAGCTC
ACTTCTGAACACATCACCCGCTACTCTCGGCAGCTGCTCCTCCCATCCTT
TGGCGTGCAAGGGCAGCGAAACCTTTTGTCGTCCTCTGTGCTTGTCGTCG
GTGCCGGCGGGCTGGGCTCGGCCGTCCTCCTTTACCTAGCTGGGGCCGGC
GTAGGCCGTTTGGGAATTGTCGACTTCGATGGGGTCGAACGCAGCAATCT
CCACCGACAGGTCATCCACACCGAGGCAAGGGAGGGCGGTAGGAAAGCCT
GGTCTGCCGCAGAAAGTGTCCGGGCCCTGAATAGCCAGGTGGAGGTGTGT
GTGTATGAGGAGGAGGTGGGATGGGACAACGTGGAGGGGCTGCTGCAAGG
GTGGGAGGTTGTGGTGGACGCTAGCGATAATCCCCGTACGAGATATTTAC
TCAATGATGCCTGTTGGCTGGGCCAGGGGGAGGGTGAGGGAGGGAGGGAG
GAAGGGAAGGAGGGAAGGAGGAGGAGGGGGAGGAGGGGGAGGCCGTCGGC
GCTGGTGTCCGGGGCAGCTCTGGGCTTGGAGGGACAGGTGACAGTCTTTG
ACTACGAGCCGTTGGGGCAAGAAGCAGGACGTGGGAAAGGTGGAAGAGGA
GGAAGGGGGGGGGGGGGGGAGGAGAAGGGGAAGGAGGAGGAGGACGCAGG
GGAGGAGGAGGACAGGGAGAACAGAAGTTGA

protein sequence of jgi.p|Nanoce1779_2|551358

>mRNA_607-protein ID=mRNA_607-protein|Name=jgi.p|Nanoce1779_2|551358|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MTATGGQAARTAELEQNPPPALSYEALLEENLRLKEQLQQLQQQHQRQQS
QQQQQQQQRKKTPSTPLSCSSSVPLPPLPPVHQLTSEHITRYSRQLLLPS
FGVQGQRNLLSSSVLVVGAGGLGSAVLLYLAGAGVGRLGIVDFDGVERSN
LHRQVIHTEAREGGRKAWSAAESVRALNSQVEVCVYEEEVGWDNVEGLLQ
GWEVVVDASDNPRTRYLLNDACWLGQGEGEGGREEGKEGRRRRGRRGRPS
ALVSGAALGLEGQVTVFDYEPLGQEAGRGKGGRGGRGGGGEEKGKEEEDA
GEEEDRENRS*

mRNA from alignment at scaffold_3:1520101..1521356+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_607 ID=mRNA_607|Name=jgi.p|Nanoce1779_2|551358|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp|location=Sequence derived from alignment at scaffold_3:1520101..1521356+ (Nannochloropsis oceanica)
CGTGGGCCAGGAGGTCGACATCTCCTTGTTGCACTATATGACGCTTCCCA
CACCCACAACCCACAGAGACCACTGGCTGTGGACAAAGAGGGAGAAATAT
GACAGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCGAGGTGAGTT
TAAGGATGTTGGCCTCGTACCCTCCCTCCCTCCCAAACGGACTTGCCTCC
CCTCCCTCACTCTGCTCCCTCTCCGCCTTGACAGCAGAATCCCCCCCCAG
CACTGTCCTATGAAGCGCTCCTCGAGGAAAATTTACGTCTCAAGGAACAG
CTCCAGCAGCTGCAGCAACAACATCAACGACAACAATCGCAGCAGCAGCA
GCAGCAGCAGCAGCGAAAAAAAACTCCATCTACTCCCCTTTCCTGTTCCT
CCTCCGTCCCTCTCCCCCCTCTCCCGCCTGTCCACCAGCTCACTTCTGAA
CACATCACCCGCTACTCTCGGCAGCTGCTCCTCCCATCCTTTGGCGTGCA
AGGGCAGCGAAACCTTTTGTCGTCCTCTGTGCTTGTCGTCGGTGCCGGTA
TGTGTCTCCCTTTCCTCCTCCCTCCCCTTTCAGCTCTGCCCTCCCTCTCT
TCATGCATTCTCTTACCGCGATGATATCAACTATCTATTCATACTGTTTC
TCTTGCCCTCCTTCTTCCCTCTGTCGACAAGGCGGGCTGGGCTCGGCCGT
CCTCCTTTACCTAGCTGGGGCCGGCGTAGGCCGTTTGGGAATTGTCGACT
TCGATGGGGTCGAACGCAGCAATCTCCACCGACAGGTCATCCACACCGAG
GCAAGGGAGGGCGGTAGGAAAGCCTGGTCTGCCGCAGAAAGTGTCCGGGC
CCTGAATAGCCAGGTGGAGGTGTGTGTGTATGAGGAGGAGGTGGGATGGG
ACAACGTGGAGGGGCTGCTGCAAGGGTGGGAGGTTGTGGTGGACGCTAGC
GATAATCCCCGTACGAGATATTTACTCAATGATGCCTGTTGGCTGGGCCA
GGGGGAGGGTGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAAGGAGGAGGA
GGGGGAGGAGGGGGAGGCCGTCGGCGCTGGTGTCCGGGGCAGCTCTGGGC
TTGGAGGGACAGGTGACAGTCTTTGACTACGAGCCGTTGGGGCAAGAAGC
AGGACGTGGGAAAGGTGGAAGAGGAGGAAGGGGGGGGGGGGGGGAGGAGA
AGGGGAAGGAGGAGGAGGACGCAGGGGAGGAGGAGGACAGGGAGAACAGA
AGTTGA

Coding sequence (CDS) from alignment at scaffold_3:1520101..1521356+

>mRNA_607 ID=mRNA_607|Name=jgi.p|Nanoce1779_2|551358|organism=Nannochloropsis oceanica|type=CDS|length=2799bp|location=Sequence derived from alignment at scaffold_3:1520101..1521356+ (Nannochloropsis oceanica)
ATGACAGCTACTGGAGGCCAAGCTGCCCGAACGGCAGAGCTCGAGCAGAA
TCCCCCCCCAGCACTGTCCTATGAAGCGCTCCTCGAGGAAAATTTACGTC
TCAAGGAACAGCTCCAGCAGCTGCAGCAACAACATCAACGACAACAATCG
CAGCAGCAGCAGCAGCAGCAGCAGCGAAAAAAAACTCCATCTACTCCCCT
TTCCTGTTCCTCCTCCGTCCCTCTCCCCCCTCTCCCGCCTGTCCACCAGC
TCACTTCTGAACACATCACCCGCTACTCTCGGCAGCTGCTCCTCCCATCC
TTTGGCGTGCAAGGGCAGCGAAACCTTTTGTCGTCCTCTGTGCTTGTCGT
CGGTGCCGGCGGGCTGGGCTCGGCCGTCCTCCTTTACCTAGCTGGGGCCG
GCGTAGGCCGTTTGGGAATTGTCGACTTCGATGGGGTCGAACGCAGCAAT
CTCCACCGACAGGTCATCCACACCGAGGCAAGGGAGGGCGGTAGGAAAGC
CTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAATAGCCAGGTGGAGGTGT
GTGTGTATGAGGAGGAGGTGGGATGGGACAACGTGGAGGGGCTGCTGCAA
GGGTGGGAGGTTGTGGTGGACGCTAGCGATAATCCCCGTACGAGATATTT
ACTCAATGATGCCTGTTGGCTGGGCCAGGGGGAGGGTGAGGGAGGGAGGG
AGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGAGGAGGGGGAGGCCGTCG
GCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAGGGACAGGTGACAGTCTT
TGACTACGAGCCGTTGGGGCAAGAAGCAGGACGTGGGAAAGGTGGAAGAG
GAGGAAGGGGGGGGGGGGGGGAGGAGAAGGGGAAGGAGGAGGAGGACGCA
GGGGAGGAGGAGGACAGGGAGAACAGAAGTTGAATGACAGCTACTGGAGG
CCAAGCTGCCCGAACGGCAGAGCTCGAGCAGAATCCCCCCCCAGCACTGT
CCTATGAAGCGCTCCTCGAGGAAAATTTACGTCTCAAGGAACAGCTCCAG
CAGCTGCAGCAACAACATCAACGACAACAATCGCAGCAGCAGCAGCAGCA
GCAGCAGCGAAAAAAAACTCCATCTACTCCCCTTTCCTGTTCCTCCTCCG
TCCCTCTCCCCCCTCTCCCGCCTGTCCACCAGCTCACTTCTGAACACATC
ACCCGCTACTCTCGGCAGCTGCTCCTCCCATCCTTTGGCGTGCAAGGGCA
GCGAAACCTTTTGTCGTCCTCTGTGCTTGTCGTCGGTGCCGGCGGGCTGG
GCTCGGCCGTCCTCCTTTACCTAGCTGGGGCCGGCGTAGGCCGTTTGGGA
ATTGTCGACTTCGATGGGGTCGAACGCAGCAATCTCCACCGACAGGTCAT
CCACACCGAGGCAAGGGAGGGCGGTAGGAAAGCCTGGTCTGCCGCAGAAA
GTGTCCGGGCCCTGAATAGCCAGGTGGAGGTGTGTGTGTATGAGGAGGAG
GTGGGATGGGACAACGTGGAGGGGCTGCTGCAAGGGTGGGAGGTTGTGGT
GGACGCTAGCGATAATCCCCGTACGAGATATTTACTCAATGATGCCTGTT
GGCTGGGCCAGGGGGAGGGTGAGGGAGGGAGGGAGGAAGGGAAGGAGGGA
AGGAGGAGGAGGGGGAGGAGGGGGAGGCCGTCGGCGCTGGTGTCCGGGGC
AGCTCTGGGCTTGGAGGGACAGGTGACAGTCTTTGACTACGAGCCGTTGG
GGCAAGAAGCAGGACGTGGGAAAGGTGGAAGAGGAGGAAGGGGGGGGGGG
GGGGAGGAGAAGGGGAAGGAGGAGGAGGACGCAGGGGAGGAGGAGGACAG
GGAGAACAGAAGTTGAATGACAGCTACTGGAGGCCAAGCTGCCCGAACGG
CAGAGCTCGAGCAGAATCCCCCCCCAGCACTGTCCTATGAAGCGCTCCTC
GAGGAAAATTTACGTCTCAAGGAACAGCTCCAGCAGCTGCAGCAACAACA
TCAACGACAACAATCGCAGCAGCAGCAGCAGCAGCAGCAGCGAAAAAAAA
CTCCATCTACTCCCCTTTCCTGTTCCTCCTCCGTCCCTCTCCCCCCTCTC
CCGCCTGTCCACCAGCTCACTTCTGAACACATCACCCGCTACTCTCGGCA
GCTGCTCCTCCCATCCTTTGGCGTGCAAGGGCAGCGAAACCTTTTGTCGT
CCTCTGTGCTTGTCGTCGGTGCCGGCGGGCTGGGCTCGGCCGTCCTCCTT
TACCTAGCTGGGGCCGGCGTAGGCCGTTTGGGAATTGTCGACTTCGATGG
GGTCGAACGCAGCAATCTCCACCGACAGGTCATCCACACCGAGGCAAGGG
AGGGCGGTAGGAAAGCCTGGTCTGCCGCAGAAAGTGTCCGGGCCCTGAAT
AGCCAGGTGGAGGTGTGTGTGTATGAGGAGGAGGTGGGATGGGACAACGT
GGAGGGGCTGCTGCAAGGGTGGGAGGTTGTGGTGGACGCTAGCGATAATC
CCCGTACGAGATATTTACTCAATGATGCCTGTTGGCTGGGCCAGGGGGAG
GGTGAGGGAGGGAGGGAGGAAGGGAAGGAGGGAAGGAGGAGGAGGGGGAG
GAGGGGGAGGCCGTCGGCGCTGGTGTCCGGGGCAGCTCTGGGCTTGGAGG
GACAGGTGACAGTCTTTGACTACGAGCCGTTGGGGCAAGAAGCAGGACGT
GGGAAAGGTGGAAGAGGAGGAAGGGGGGGGGGGGGGGAGGAGAAGGGGAA
GGAGGAGGAGGACGCAGGGGAGGAGGAGGACAGGGAGAACAGAAGTTGA

Synonyms

Publications