jgi.p|Nanoce1779_2|556917, mRNA_6069 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|556917
Unique Name	mRNA_6069
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1687
Alignment location	scaffold_14:450903..453032 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557003
Track	FilteredModels2
ProteinId	556917

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:450903..453032 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556917	gene_6069	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|556917	mRNA_6069-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6069	CDS_6069	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:450903..453032+
coding sequence from alignment at scaffold_14:450903..453032+

mRNA sequence

>mRNA_6069 ID=mRNA_6069|Name=jgi.p|Nanoce1779_2|556917|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp
ACAAACAACATTGATTGATTGATTAATTTATTCATATTTATCTATTTGTT
TATTCTTTTGTGAGACCTATATAAATTAAAAGGCTTGACCACCATTAACA
TCAACACACCACAACAACCTCCCGTCATGGCAATGTTCGCCAGCAGCATC
TGGCGAGCCGGCAGAGCTATGAGTGCCTTCATGTAATCACCAGAGCACAT
CATGTGCACGTACAAGACTATCACGCCATATACCTATGCCCTAACCTGTT
CACAGCACTAACGACCCTGAAAGACGAGCCAGAGGAAGGGGCAGGGTAGC
ACTAATGCGGGCTTCACGATGCCACCTCCCTTTTTGTCCCCTCTCCCTCC
TCTCGCCCTTCCTTCTCCTTGCCCTTTTGGTCAGCACCGCCAGCATCAAT
GCCTTCTCCTGGCCCAGGCTTGGCAGCAAAAAGGAATGCGTCCGTTCCTT
CAAAGCAGTCGCGTACTCCATAAGCACGTACGCTGCCAACAGTCCTATTG
AAGACCGGCACGTTGTGGTTGATGAACAATCGTCCTCTCTATTTTCATTG
GCTTCCAATCCCCTCCCCTTCTTTCATGCCGCAGTGTTTGATGGTCATGG
AGGGTTTGAGGTGGCGGAGATGGTGAAGAATAATTTGGTGGGGAAAGTAA
AGGAGACGATTGCGAAGCTTCCGGCGCACGCACAGAAGGATGAAACTGTG
ATTACAAACGCCCTCATCCACGCCTTCATCCTGGTCGAAACCGATTGGAT
CACCGGCGTCTTGGCCCTGGAAAATGAGCTCCAACAACGAAAGAAAGCCA
CCATTGGCGCCTGTGCCCTCTACGCGTTGGTGAAGGACAACATCCTATAC
GTTGCGAACGCGGGTGACTGCCGTGCAGTCATGGGCAAACTTCGCCACCC
CTTAAAGGACCCCTCCGCCCCTCCTTCCCTCGTGCCCTCCCCCGTGGCTG
GCTCGGAAAAGGTGTATGAAGCGATTCCCATGAGCTTAGATCACAACGCG
AGGGAGGAGAGGGAGCATGCGCGATTGAGAAAGGCCCACCCCGGGGAGGA
TGAGGATATTGTGTTATGCTACCACGGGGGGCAGGCGTGCTATGTGAAGG
GGAGGTTACAACCGTCTCGGGCGTTTGGCGACATACATTTGAAGCTGGAA
GACTTTGGTCCTGAAGACGAAGACCTGCCATGGACGCCGCCTTATGTCTC
GGCGATCCCTGAAGTTGCTTCTGTTGCATTGAACAGGCTAGATCAATTCC
TCGTTCTGGGATCTGACGGGCTGTGGGAAGTGTTCGAGAACGAGGAGGTA
GTGAGCATGGTCGCTGGGTGGAGGGAGGAAGGGAGGGAGGAAGGGCGGAT
CGCGTCCCTGATAGTCGACGCGGCCTTGGTGAGGATCGCGGAGGGTTTAA
GAATGAGCGTGGAGGAGCTGAAAGAGGTGAAGGAGGGGAGGGAGAGGAGG
AGGAAACATGACGATATAACGGTGGTGGTGTTGTTCTTGGGAGAGGAGAG
GGAGGGGGACTGTCCGCTGGAGGGGTCGGAGGCTTGGGAGGAGGAGTTGG
GCGCCGAAGTGGACGACTTTATCTACCCGGAAGAGGAGGAGGAGGAGGGA
GGGAGGGGGGAAGTAGGGGGGGAGGGAGGGGGCGAGGAGAGGCCGGATTT
GTTTGGAGCCGGGAAGGAGAGGAAACAGGAGTTGTAG

protein sequence of jgi.p|Nanoce1779_2|556917

>mRNA_6069-protein ID=mRNA_6069-protein|Name=jgi.p|Nanoce1779_2|556917|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MRASRCHLPFCPLSLLSPFLLLALLVSTASINAFSWPRLGSKKECVRSFK
AVAYSISTYAANSPIEDRHVVVDEQSSSLFSLASNPLPFFHAAVFDGHGG
FEVAEMVKNNLVGKVKETIAKLPAHAQKDETVITNALIHAFILVETDWIT
GVLALENELQQRKKATIGACALYALVKDNILYVANAGDCRAVMGKLRHPL
KDPSAPPSLVPSPVAGSEKVYEAIPMSLDHNAREEREHARLRKAHPGEDE
DIVLCYHGGQACYVKGRLQPSRAFGDIHLKLEDFGPEDEDLPWTPPYVSA
IPEVASVALNRLDQFLVLGSDGLWEVFENEEVVSMVAGWREEGREEGRIA
SLIVDAALVRIAEGLRMSVEELKEVKEGRERRRKHDDITVVVLFLGEERE
GDCPLEGSEAWEEELGAEVDDFIYPEEEEEEGGRGEVGGEGGGEERPDLF
GAGKERKQEL*

mRNA from alignment at scaffold_14:450903..453032+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6069 ID=mRNA_6069|Name=jgi.p|Nanoce1779_2|556917|organism=Nannochloropsis oceanica|type=mRNA|length=2130bp|location=Sequence derived from alignment at scaffold_14:450903..453032+ (Nannochloropsis oceanica)
ACAAACAACATTGATTGATTGATTAATTTATTCATATTTATCTATTTGTT
TATTCTTTTGTGAGACCTATATAAATTAAAAGGCTTGACCACCATTAACA
TCAACACACCACAACAACCTCCCGTCATGGCAATGTTCGCCAGCAGCATC
TGGCGAGCCGGCAGAGCTATGAGTGCCTTCATGTAATCACCAGAGCACAT
CATGTGCACGTACAAGACTATCACGCCATATACCTATGCCCTAACCTGTT
CACAGCACTAACGACCCTGAAAGACGAGCCAGAGGAAGGGGCAGGGTAGC
ACTAATGCGGGCTTCACGATGCCACCTCCCTTTTTGTCCCCTCTCCCTCC
TCTCGCCCTTCCTTCTCCTTGCCCTTTTGGTCAGCACCGCCAGCATCAAT
GCCTTCTCCTGGCCCAGGCTTGGCAGCAAAAAGGAATGCGTCCGTTCCTT
CAAAGCAGTCGCGTACTCCATAAGCACGTACGCTGCCAACAGTCCTATTG
AAGACCGGCACGTTGTGGTTGATGAACAATCGTCCTCTCTATTTTCATTG
GCTTCCAATCCCCTCCCCTTCTTTCATGCCGCAGTGTTTGATGGTCATGG
AGGGTTTGAGGTGGCGGAGATGGTGAAGAATAATTTGGTGGGGAAAGTAA
AGGAGACGATTGCGAAGCTTCCGGCGCACGCACAGAAGGATGAAACTGTG
GTACGTAGAAGTAAATAAATTGGGAAAAGATTGAAAGCGAATGCGAGATA
TGTGTCTTAAGGATCCTTGGATTTCGCACACAACTTCAGGAAAGGAGTGA
CAGCGACGCGACACAACATTTCGCGGTGACTCACCATTTCACTCCCTCCC
TCCTTCCCCTCCTCCCTCCCTTCTCAGATTACAAACGCCCTCATCCACGC
CTTCATCCTGGTCGAAACCGATTGGATCACCGGCGTCTTGGCCCTGGAAA
ATGAGCTCCAACAACGAAAGAAAGCCACCATTGGCGCCTGTGCCCTCTAC
GCGTTGGTGAAGGACAACATCCTATACGTTGCGAACGCGGGTGACTGCCG
TGCAGTCATGGGCAAACTTCGCCACCCCTTAAAGGACCCCTCCGCCCCTC
CTTCCCTCGTGCCCTCCCCCGTGGCTGGCTCGGAAAAGGTGTATGAAGCG
ATTCCCATGAGCTTAGATCACAACGCGAGGGAGGAGAGGGAGCATGCGCG
ATTGAGAAAGGCCCACCCCGGGGAGGATGAGGATATTGTGTTATGCTACC
ACGGGGGGCAGGCGTGCTATGTGAAGGGGAGGTTACAACCGTCTCGGGCG
TTTGGCGACATACATTTGAAGCTGGAAGGTGAGGAGGCTGGAAGGGAGGG
TGAAAGGGGGGGTGAAAGGGAGGGAGGTGGAGATGGAGGAAGGGAGGGAG
GGAGGGAGGGAGGGAGGGTCATCCGGGCTTTTGACGACATTCATTTGAAG
TCTGGAGGTAACAAGGGTAGAAGGGAGAGAGGAGGGAAGGAGACAGCAAG
ACAGAGGGTCAGTCGTACGGTATTTTTCCTCAAACGTGAATTCGGCCTCT
CACCCGTCTTCCTTTCCCCTTCCCTTCCTCCCTCTCTTCCTCAGACTTTG
GTCCTGAAGACGAAGACCTGCCATGGACGCCGCCTTATGTCTCGGCGATC
CCTGAAGTTGCTTCTGTTGCATTGAACAGGCTAGATCAATTCCTCGTTCT
GGGATCTGACGGGCTGTGGGAAGTGTTCGAGAACGAGGAGGTAGTGAGCA
TGGTCGCTGGGTGGAGGGAGGAAGGGAGGGAGGAAGGGCGGATCGCGTCC
CTGATAGTCGACGCGGCCTTGGTGAGGATCGCGGAGGGTTTAAGAATGAG
CGTGGAGGAGCTGAAAGAGGTGAAGGAGGGGAGGGAGAGGAGGAGGAAAC
ATGACGATATAACGGTGGTGGTGTTGTTCTTGGGAGAGGAGAGGGAGGGG
GACTGTCCGCTGGAGGGGTCGGAGGCTTGGGAGGAGGAGTTGGGCGCCGA
AGTGGACGACTTTATCTACCCGGAAGAGGAGGAGGAGGAGGGAGGGAGGG
GGGAAGTAGGGGGGGAGGGAGGGGGCGAGGAGAGGCCGGATTTGTTTGGA
GCCGGGAAGGAGAGGAAACAGGAGTTGTAG

Coding sequence (CDS) from alignment at scaffold_14:450903..453032+

>mRNA_6069 ID=mRNA_6069|Name=jgi.p|Nanoce1779_2|556917|organism=Nannochloropsis oceanica|type=CDS|length=4149bp|location=Sequence derived from alignment at scaffold_14:450903..453032+ (Nannochloropsis oceanica)
ATGCGGGCTTCACGATGCCACCTCCCTTTTTGTCCCCTCTCCCTCCTCTC
GCCCTTCCTTCTCCTTGCCCTTTTGGTCAGCACCGCCAGCATCAATGCCT
TCTCCTGGCCCAGGCTTGGCAGCAAAAAGGAATGCGTCCGTTCCTTCAAA
GCAGTCGCGTACTCCATAAGCACGTACGCTGCCAACAGTCCTATTGAAGA
CCGGCACGTTGTGGTTGATGAACAATCGTCCTCTCTATTTTCATTGGCTT
CCAATCCCCTCCCCTTCTTTCATGCCGCAGTGTTTGATGGTCATGGAGGG
TTTGAGGTGGCGGAGATGGTGAAGAATAATTTGGTGGGGAAAGTAAAGGA
GACGATTGCGAAGCTTCCGGCGCACGCACAGAAGGATGAAACTGTGATTA
CAAACGCCCTCATCCACGCCTTCATCCTGGTCGAAACCGATTGGATCACC
GGCGTCTTGGCCCTGGAAAATGAGCTCCAACAACGAAAGAAAGCCACCAT
TGGCGCCTGTGCCCTCTACGCGTTGGTGAAGGACAACATCCTATACGTTG
CGAACGCGGGTGACTGCCGTGCAGTCATGGGCAAACTTCGCCACCCCTTA
AAGGACCCCTCCGCCCCTCCTTCCCTCGTGCCCTCCCCCGTGGCTGGCTC
GGAAAAGGTGTATGAAGCGATTCCCATGAGCTTAGATCACAACGCGAGGG
AGGAGAGGGAGCATGCGCGATTGAGAAAGGCCCACCCCGGGGAGGATGAG
GATATTGTGTTATGCTACCACGGGGGGCAGGCGTGCTATGTGAAGGGGAG
GTTACAACCGTCTCGGGCGTTTGGCGACATACATTTGAAGCTGGAAGACT
TTGGTCCTGAAGACGAAGACCTGCCATGGACGCCGCCTTATGTCTCGGCG
ATCCCTGAAGTTGCTTCTGTTGCATTGAACAGGCTAGATCAATTCCTCGT
TCTGGGATCTGACGGGCTGTGGGAAGTGTTCGAGAACGAGGAGGTAGTGA
GCATGGTCGCTGGGTGGAGGGAGGAAGGGAGGGAGGAAGGGCGGATCGCG
TCCCTGATAGTCGACGCGGCCTTGGTGAGGATCGCGGAGGGTTTAAGAAT
GAGCGTGGAGGAGCTGAAAGAGGTGAAGGAGGGGAGGGAGAGGAGGAGGA
AACATGACGATATAACGGTGGTGGTGTTGTTCTTGGGAGAGGAGAGGGAG
GGGGACTGTCCGCTGGAGGGGTCGGAGGCTTGGGAGGAGGAGTTGGGCGC
CGAAGTGGACGACTTTATCTACCCGGAAGAGGAGGAGGAGGAGGGAGGGA
GGGGGGAAGTAGGGGGGGAGGGAGGGGGCGAGGAGAGGCCGGATTTGTTT
GGAGCCGGGAAGGAGAGGAAACAGGAGTTGTAGATGCGGGCTTCACGATG
CCACCTCCCTTTTTGTCCCCTCTCCCTCCTCTCGCCCTTCCTTCTCCTTG
CCCTTTTGGTCAGCACCGCCAGCATCAATGCCTTCTCCTGGCCCAGGCTT
GGCAGCAAAAAGGAATGCGTCCGTTCCTTCAAAGCAGTCGCGTACTCCAT
AAGCACGTACGCTGCCAACAGTCCTATTGAAGACCGGCACGTTGTGGTTG
ATGAACAATCGTCCTCTCTATTTTCATTGGCTTCCAATCCCCTCCCCTTC
TTTCATGCCGCAGTGTTTGATGGTCATGGAGGGTTTGAGGTGGCGGAGAT
GGTGAAGAATAATTTGGTGGGGAAAGTAAAGGAGACGATTGCGAAGCTTC
CGGCGCACGCACAGAAGGATGAAACTGTGATTACAAACGCCCTCATCCAC
GCCTTCATCCTGGTCGAAACCGATTGGATCACCGGCGTCTTGGCCCTGGA
AAATGAGCTCCAACAACGAAAGAAAGCCACCATTGGCGCCTGTGCCCTCT
ACGCGTTGGTGAAGGACAACATCCTATACGTTGCGAACGCGGGTGACTGC
CGTGCAGTCATGGGCAAACTTCGCCACCCCTTAAAGGACCCCTCCGCCCC
TCCTTCCCTCGTGCCCTCCCCCGTGGCTGGCTCGGAAAAGGTGTATGAAG
CGATTCCCATGAGCTTAGATCACAACGCGAGGGAGGAGAGGGAGCATGCG
CGATTGAGAAAGGCCCACCCCGGGGAGGATGAGGATATTGTGTTATGCTA
CCACGGGGGGCAGGCGTGCTATGTGAAGGGGAGGTTACAACCGTCTCGGG
CGTTTGGCGACATACATTTGAAGCTGGAAGACTTTGGTCCTGAAGACGAA
GACCTGCCATGGACGCCGCCTTATGTCTCGGCGATCCCTGAAGTTGCTTC
TGTTGCATTGAACAGGCTAGATCAATTCCTCGTTCTGGGATCTGACGGGC
TGTGGGAAGTGTTCGAGAACGAGGAGGTAGTGAGCATGGTCGCTGGGTGG
AGGGAGGAAGGGAGGGAGGAAGGGCGGATCGCGTCCCTGATAGTCGACGC
GGCCTTGGTGAGGATCGCGGAGGGTTTAAGAATGAGCGTGGAGGAGCTGA
AAGAGGTGAAGGAGGGGAGGGAGAGGAGGAGGAAACATGACGATATAACG
GTGGTGGTGTTGTTCTTGGGAGAGGAGAGGGAGGGGGACTGTCCGCTGGA
GGGGTCGGAGGCTTGGGAGGAGGAGTTGGGCGCCGAAGTGGACGACTTTA
TCTACCCGGAAGAGGAGGAGGAGGAGGGAGGGAGGGGGGAAGTAGGGGGG
GAGGGAGGGGGCGAGGAGAGGCCGGATTTGTTTGGAGCCGGGAAGGAGAG
GAAACAGGAGTTGTAGATGCGGGCTTCACGATGCCACCTCCCTTTTTGTC
CCCTCTCCCTCCTCTCGCCCTTCCTTCTCCTTGCCCTTTTGGTCAGCACC
GCCAGCATCAATGCCTTCTCCTGGCCCAGGCTTGGCAGCAAAAAGGAATG
CGTCCGTTCCTTCAAAGCAGTCGCGTACTCCATAAGCACGTACGCTGCCA
ACAGTCCTATTGAAGACCGGCACGTTGTGGTTGATGAACAATCGTCCTCT
CTATTTTCATTGGCTTCCAATCCCCTCCCCTTCTTTCATGCCGCAGTGTT
TGATGGTCATGGAGGGTTTGAGGTGGCGGAGATGGTGAAGAATAATTTGG
TGGGGAAAGTAAAGGAGACGATTGCGAAGCTTCCGGCGCACGCACAGAAG
GATGAAACTGTGATTACAAACGCCCTCATCCACGCCTTCATCCTGGTCGA
AACCGATTGGATCACCGGCGTCTTGGCCCTGGAAAATGAGCTCCAACAAC
GAAAGAAAGCCACCATTGGCGCCTGTGCCCTCTACGCGTTGGTGAAGGAC
AACATCCTATACGTTGCGAACGCGGGTGACTGCCGTGCAGTCATGGGCAA
ACTTCGCCACCCCTTAAAGGACCCCTCCGCCCCTCCTTCCCTCGTGCCCT
CCCCCGTGGCTGGCTCGGAAAAGGTGTATGAAGCGATTCCCATGAGCTTA
GATCACAACGCGAGGGAGGAGAGGGAGCATGCGCGATTGAGAAAGGCCCA
CCCCGGGGAGGATGAGGATATTGTGTTATGCTACCACGGGGGGCAGGCGT
GCTATGTGAAGGGGAGGTTACAACCGTCTCGGGCGTTTGGCGACATACAT
TTGAAGCTGGAAGACTTTGGTCCTGAAGACGAAGACCTGCCATGGACGCC
GCCTTATGTCTCGGCGATCCCTGAAGTTGCTTCTGTTGCATTGAACAGGC
TAGATCAATTCCTCGTTCTGGGATCTGACGGGCTGTGGGAAGTGTTCGAG
AACGAGGAGGTAGTGAGCATGGTCGCTGGGTGGAGGGAGGAAGGGAGGGA
GGAAGGGCGGATCGCGTCCCTGATAGTCGACGCGGCCTTGGTGAGGATCG
CGGAGGGTTTAAGAATGAGCGTGGAGGAGCTGAAAGAGGTGAAGGAGGGG
AGGGAGAGGAGGAGGAAACATGACGATATAACGGTGGTGGTGTTGTTCTT
GGGAGAGGAGAGGGAGGGGGACTGTCCGCTGGAGGGGTCGGAGGCTTGGG
AGGAGGAGTTGGGCGCCGAAGTGGACGACTTTATCTACCCGGAAGAGGAG
GAGGAGGAGGGAGGGAGGGGGGAAGTAGGGGGGGAGGGAGGGGGCGAGGA
GAGGCCGGATTTGTTTGGAGCCGGGAAGGAGAGGAAACAGGAGTTGTAG

Synonyms

Publications