jgi.p|Nanoce1779_2|593648, mRNA_6068 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593648
Unique NamemRNA_6068
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length487
Alignment locationscaffold_14:450296..450782 -

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Properties
Property NameValue
TranscriptId593734
TrackFilteredModels2
ProteinId593648
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:450296..450782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593648gene_6068Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593648mRNA_6068-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6068CDS_6068Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6068 ID=mRNA_6068|Name=jgi.p|Nanoce1779_2|593648|organism=Nannochloropsis oceanica|type=mRNA|length=487bp
AGGTGAAGTACAGCGTGGGTGACCCTTCTTTCAGCCTTCTGCTACTTCTG
CTCCACCATACACATGCCACAACAGGTGGGGAGCCCCACCACTCGCCAGC
AGCAGCACCCGCCGCAGCCACTGGACGGAGGCATGGACCCCACTTTCTTA
CAAAGATGGCTGTTGATTAAGTGCGTGGCATCGTCACAATGAATTCGTCT
GGCTATGGGGAGGCTACGAGCGGCGATGAGACGGGTTCAGGGCTATGGGG
GCTTGCCTCTTTCATATATCACTCGGGCGCGCCCAATACCTTTCGATACC
ATTGCGGTGCCCACATGTTTATAAAGGCGGCCAAGGAACTGAAGCGAGGG
AATTAGGTAACCACCACACATATTGCAGATGAAAACATGGACAAGACGAA
GAGGGGGGAAACGCTACTGTGGACGTGGGGAATCATGGATGAGCAGGGGG
GCAAGAATAAGAGTGCAGGGGGTGGGAAGAAGGCACA
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protein sequence of jgi.p|Nanoce1779_2|593648

>mRNA_6068-protein ID=mRNA_6068-protein|Name=jgi.p|Nanoce1779_2|593648|organism=Nannochloropsis oceanica|type=polypeptide|length=56bp
MNSSGYGEATSGDETGSGLWGLASFIYHSGAPNTFRYHCGAHMFIKAAKE
LKRGN*
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mRNA from alignment at scaffold_14:450296..450782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6068 ID=mRNA_6068|Name=jgi.p|Nanoce1779_2|593648|organism=Nannochloropsis oceanica|type=mRNA|length=487bp|location=Sequence derived from alignment at scaffold_14:450296..450782- (Nannochloropsis oceanica)
AGGTGAAGTACAGCGTGGGTGACCCTTCTTTCAGCCTTCTGCTACTTCTG
CTCCACCATACACATGCCACAACAGGTGGGGAGCCCCACCACTCGCCAGC
AGCAGCACCCGCCGCAGCCACTGGACGGAGGCATGGACCCCACTTTCTTA
CAAAGATGGCTGTTGATTAAGTGCGTGGCATCGTCACAATGAATTCGTCT
GGCTATGGGGAGGCTACGAGCGGCGATGAGACGGGTTCAGGGCTATGGGG
GCTTGCCTCTTTCATATATCACTCGGGCGCGCCCAATACCTTTCGATACC
ATTGCGGTGCCCACATGTTTATAAAGGCGGCCAAGGAACTGAAGCGAGGG
AATTAGGTAACCACCACACATATTGCAGATGAAAACATGGACAAGACGAA
GAGGGGGGAAACGCTACTGTGGACGTGGGGAATCATGGATGAGCAGGGGG
GCAAGAATAAGAGTGCAGGGGGTGGGAAGAAGGCACA
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Coding sequence (CDS) from alignment at scaffold_14:450296..450782-

>mRNA_6068 ID=mRNA_6068|Name=jgi.p|Nanoce1779_2|593648|organism=Nannochloropsis oceanica|type=CDS|length=168bp|location=Sequence derived from alignment at scaffold_14:450296..450782- (Nannochloropsis oceanica)
ATGAATTCGTCTGGCTATGGGGAGGCTACGAGCGGCGATGAGACGGGTTC
AGGGCTATGGGGGCTTGCCTCTTTCATATATCACTCGGGCGCGCCCAATA
CCTTTCGATACCATTGCGGTGCCCACATGTTTATAAAGGCGGCCAAGGAA
CTGAAGCGAGGGAATTAG
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Synonyms
Publications