jgi.p|Nanoce1779_2|593646, mRNA_6067 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593646
Unique NamemRNA_6067
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length728
Alignment locationscaffold_14:449568..450295 -

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Properties
Property NameValue
TranscriptId593732
TrackFilteredModels2
ProteinId593646
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:449568..450295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593646gene_6067Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593646mRNA_6067-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6067CDS_6067Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6067 ID=mRNA_6067|Name=jgi.p|Nanoce1779_2|593646|organism=Nannochloropsis oceanica|type=mRNA|length=728bp
TCAGAAGAAAGAAGAATGAGGGGGAAAAGCGAAGTGAGGTGGTGCCGTGG
AAGGAAAGGGATGAATGAAAACGAGACGAGAGACACCAGATAAGTAAAAA
ATCAGAGCGGTCTTGCTTTTTCACCCATTGTTTCCTGTCCATGCTGTGTA
TATCCGATCCAGCGATCGATCACGGGCGCCGGTGGATAGGAGCAAGGCTA
CGCTGCGGGTTTGAAGCAAGTGCGTGTGAGTCGGTTGGTGTCTCTCGATA
CCACAGCATGCATAAAGAGGCCAGCAGCAGCCGTTTCCATCGCCGATGAT
GCGTTTTAATATTCTTCTCTATTTGTTTTTGCTCTTAGACAATATTGATT
TTAATTCATTCATGTTCTCGTCAGAGAAGTGTTCATCGTTACTGCCAATG
CACTGTCTCCTCCTCTATCATGTGCAGGATCTCATTCTATCCTCCTCCTC
TATCCTTTCCTTCCTCTCTCTCCACCTTTCTTTTTCCGCTTCAGGTCATT
TTCGTCCATCGCGTGGCAGAGTAAGTCACCTCCTTTTGTCTGCCTGTCCT
TGAGTCTCTCTATTTCTCCTCTCACCCTCTCTTTTTTCTATTCATTAATT
ACACATTCCACAATCCTAACCACCACCTCCCCTCACAATAATGGCATGCC
ATACCTCCTCCTCCCACCTCTTCATCCCCTTGCCGTTTGCCCAAACACCA
ACACCCCTACCTTTCCCCCCCTCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|593646

>mRNA_6067-protein ID=mRNA_6067-protein|Name=jgi.p|Nanoce1779_2|593646|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MMRFNILLYLFLLLDNIDFNSFMFSSEKCSSLLPMHCLLLYHVQDLILSS
SSILSFLSLHLSFSASGHFRPSRGRVSHLLLSACP*
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mRNA from alignment at scaffold_14:449568..450295-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6067 ID=mRNA_6067|Name=jgi.p|Nanoce1779_2|593646|organism=Nannochloropsis oceanica|type=mRNA|length=728bp|location=Sequence derived from alignment at scaffold_14:449568..450295- (Nannochloropsis oceanica)
TCAGAAGAAAGAAGAATGAGGGGGAAAAGCGAAGTGAGGTGGTGCCGTGG
AAGGAAAGGGATGAATGAAAACGAGACGAGAGACACCAGATAAGTAAAAA
ATCAGAGCGGTCTTGCTTTTTCACCCATTGTTTCCTGTCCATGCTGTGTA
TATCCGATCCAGCGATCGATCACGGGCGCCGGTGGATAGGAGCAAGGCTA
CGCTGCGGGTTTGAAGCAAGTGCGTGTGAGTCGGTTGGTGTCTCTCGATA
CCACAGCATGCATAAAGAGGCCAGCAGCAGCCGTTTCCATCGCCGATGAT
GCGTTTTAATATTCTTCTCTATTTGTTTTTGCTCTTAGACAATATTGATT
TTAATTCATTCATGTTCTCGTCAGAGAAGTGTTCATCGTTACTGCCAATG
CACTGTCTCCTCCTCTATCATGTGCAGGATCTCATTCTATCCTCCTCCTC
TATCCTTTCCTTCCTCTCTCTCCACCTTTCTTTTTCCGCTTCAGGTCATT
TTCGTCCATCGCGTGGCAGAGTAAGTCACCTCCTTTTGTCTGCCTGTCCT
TGAGTCTCTCTATTTCTCCTCTCACCCTCTCTTTTTTCTATTCATTAATT
ACACATTCCACAATCCTAACCACCACCTCCCCTCACAATAATGGCATGCC
ATACCTCCTCCTCCCACCTCTTCATCCCCTTGCCGTTTGCCCAAACACCA
ACACCCCTACCTTTCCCCCCCTCCTCCC
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Coding sequence (CDS) from alignment at scaffold_14:449568..450295-

>mRNA_6067 ID=mRNA_6067|Name=jgi.p|Nanoce1779_2|593646|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_14:449568..450295- (Nannochloropsis oceanica)
ATGATGCGTTTTAATATTCTTCTCTATTTGTTTTTGCTCTTAGACAATAT
TGATTTTAATTCATTCATGTTCTCGTCAGAGAAGTGTTCATCGTTACTGC
CAATGCACTGTCTCCTCCTCTATCATGTGCAGGATCTCATTCTATCCTCC
TCCTCTATCCTTTCCTTCCTCTCTCTCCACCTTTCTTTTTCCGCTTCAGG
TCATTTTCGTCCATCGCGTGGCAGAGTAAGTCACCTCCTTTTGTCTGCCT
GTCCTTGA
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Synonyms
Publications