jgi.p|Nanoce1779_2|593641, mRNA_6065 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593641
Unique Name	mRNA_6065
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1446
Alignment location	scaffold_14:442785..444609 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593727
Track	FilteredModels2
ProteinId	593641

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:442785..444609 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593641	gene_6065	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593641	mRNA_6065-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6065	CDS_6065	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:442785..444609+
coding sequence from alignment at scaffold_14:442785..444609+

mRNA sequence

>mRNA_6065 ID=mRNA_6065|Name=jgi.p|Nanoce1779_2|593641|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
ACAGGCGGATTTATGGCGTGCATTGGAGGCCCACCGCTTCTAGCAACTCT
GATGGGAATGGTGTTGGCCTTGCTGGCTTTTCCGGGCGCTACTGCAGGTC
CCTCCGAGTCTATCCGCAGTTCCTCCCTCCCCTCCTTCAAGGTCATGGAA
ATTCTAGGCCAAGCAATCGATCTTGAGAAAGCCGGTCACAAAGTCTGCCA
CTTAGAGGTCGGGCAACCCCAGAGCGGGGCCCCCAAAAAGGTGCTGAAAC
AGGCCGAAACCCAGCTCCGCTCTAATAGGCTGGGTTACACTACCTCCCAA
GGAATCGAGCCTTTGCGGAAACGCATCGCCCAACATTATGCCGAGCGCTA
TACGAAGAAAGAAGGCGAGTCGAATGTCCCCCTTCAGGTGGATCCGAACA
ATGTCGTGGTCACCACGGGGAGCTCCGGTGCATTTCTCATCACGTTCCTC
GCGGCTTTTGACGTAGGCGACGTCGTGTGCATTGCTTCGGCGGGGTACCC
CTGCTACAGAAATATTCTCAATGCCCTCGGCTGCGAAGTTGTGTCTATTC
CCGTGAATGAAAATTTTAAGGTCACGGCCGCTGAGCTTGACGCGACGGTC
AAGCGGTTGGCAGGGAAGAGAAAGAAGGTCAGGGGCCTTATCTTGTCTTC
GCCCGGCAATCCGACGGGAGCCATGTTGACACCCGCGGAGCTGAAGGGGC
TATGCGAGTATTGCGATGCTGCCGATATAACCTTTATTTCGGATGAGATT
TACCATCACATCTCCTACGGGCAGCCGGAGGCCTCGGCGCTCAGCTTTTC
CGACAAGGCCATTGTGATCAATTCCTTCTCGAAGTACTACTCCATGACAG
GCTGGCGCCTCGGGTGGATGGTTGCCCCTGCCTCCTTCGTTCCCGCCCTT
AATCGCCTCTCACAGAATTTTTTTTTAAACTCGCCCACCCTCTCGCAATA
CGCGGCTGTCGACGCGTTCGATTGTCGGGAGGAACTGGATAAGCACGTGG
CCAAATATGCAGTCAACCGTGCGGTGCTCTTGGAGGGGTTGAAGGAGGTG
GGTTTGCACAAGGTCTCGCCTGCAGATGGTGCTTTCTACGTGTATGTGGA
CGTGTCGGATGACTTGGAGGATGCCGTGACGTTCGCCAAGGATTTTTTGG
ACCAGGCGCGAGTGGCGGTGACCCCTGGGGTTGACTTCGAGGACCCGACC
ACGGGGCTTGGGCACAAGCGTTTGCGGTTCAGCTATTGTGGGGCGACGGA
GGAGATCATTGAGGCCATGAAACGTCTGAAGGCCTTTTGGCGGACGTATC
CCGGGAGGAAAAACAAGCAGGCATAAAGGTGCAGGCTTGTGGTTGGTTGA
TTGATACATAGATACGGACAGAGATGCGGTCTGCTAAATTCAGAGCGTTT
CAATGGGCGATGAGGGGGATAAAGAAGGAAGACTGACTTCTGGGAA

protein sequence of jgi.p|Nanoce1779_2|593641

>mRNA_6065-protein ID=mRNA_6065-protein|Name=jgi.p|Nanoce1779_2|593641|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MACIGGPPLLATLMGMVLALLAFPGATAGPSESIRSSSLPSFKVMEILGQ
AIDLEKAGHKVCHLEVGQPQSGAPKKVLKQAETQLRSNRLGYTTSQGIEP
LRKRIAQHYAERYTKKEGESNVPLQVDPNNVVVTTGSSGAFLITFLAAFD
VGDVVCIASAGYPCYRNILNALGCEVVSIPVNENFKVTAAELDATVKRLA
GKRKKVRGLILSSPGNPTGAMLTPAELKGLCEYCDAADITFISDEIYHHI
SYGQPEASALSFSDKAIVINSFSKYYSMTGWRLGWMVAPASFVPALNRLS
QNFFLNSPTLSQYAAVDAFDCREELDKHVAKYAVNRAVLLEGLKEVGLHK
VSPADGAFYVYVDVSDDLEDAVTFAKDFLDQARVAVTPGVDFEDPTTGLG
HKRLRFSYCGATEEIIEAMKRLKAFWRTYPGRKNKQA*

mRNA from alignment at scaffold_14:442785..444609+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6065 ID=mRNA_6065|Name=jgi.p|Nanoce1779_2|593641|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_14:442785..444609+ (Nannochloropsis oceanica)
ACAGGCGGATTTATGGCGTGCATTGGAGGCCCACCGCTTCTAGCAACTCT
GATGGGAATGGTGTTGGCCTTGCTGGCTTTTCCGGGCGCTACTGCAGGTT
AGAGATGGGTGGGACGGGAGGTAGAGGAGGGAGGACTTGTGGGGACGGAG
ACAAGGGGGGGTAAGAACCTGGGGTGGATAACGTTCCATTGCGCCAAAGC
TATTTTCCTGTCGGATGAGCTCAGAAGCCTGTCTTGCGTGCAGTAGAGGC
ACTTAAATCTCGTCGGCTTTTCGAGGCGCGGTCTCGAGGGCGTGAGACGC
AGCTCGCCAGGAGTCGACCGGAAGTGCCGCTTACGGTATCTCGTCATGCT
TTACTTCAGCAATCCACCGCACGAGGCGTTGATTCCTTTTGAAGTGGCTT
CACTCTTTATTTTTTTAAATAAAGAAAAACACTCATCACATTTATCCGCC
CTTCTCCCTTCTTGTCATCTCCCCAGGTCCCTCCGAGTCTATCCGCAGTT
CCTCCCTCCCCTCCTTCAAGGTCATGGAAATTCTAGGCCAAGCAATCGAT
CTTGAGAAAGCCGGTCACAAAGTCTGCCACTTAGAGGTCGGGCAACCCCA
GAGCGGGGCCCCCAAAAAGGTGCTGAAACAGGCCGAAACCCAGCTCCGCT
CTAATAGGCTGGGTTACACTACCTCCCAAGGAATCGAGCCTTTGCGGAAA
CGCATCGCCCAACATTATGCCGAGCGCTATACGAAGAAAGAAGGCGAGTC
GAATGTCCCCCTTCAGGTGGATCCGAACAATGTCGTGGTCACCACGGGGA
GCTCCGGTGCATTTCTCATCACGTTCCTCGCGGCTTTTGACGTAGGCGAC
GTCGTGTGCATTGCTTCGGCGGGGTACCCCTGCTACAGAAATATTCTCAA
TGCCCTCGGCTGCGAAGTTGTGTCTATTCCCGTGAATGAAAATTTTAAGG
TCACGGCCGCTGAGCTTGACGCGACGGTCAAGCGGTTGGCAGGGAAGAGA
AAGAAGGTCAGGGGCCTTATCTTGTCTTCGCCCGGCAATCCGACGGGAGC
CATGTTGACACCCGCGGAGCTGAAGGGGCTATGCGAGTATTGCGATGCTG
CCGATATAACCTTTATTTCGGATGAGATTTACCATCACATCTCCTACGGG
CAGCCGGAGGCCTCGGCGCTCAGCTTTTCCGACAAGGCCATTGTGATCAA
TTCCTTCTCGAAGTACTACTCCATGACAGGCTGGCGCCTCGGGTGGATGG
TTGCCCCTGCCTCCTTCGTTCCCGCCCTTAATCGCCTCTCACAGAATTTT
TTTTTAAACTCGCCCACCCTCTCGCAATACGCGGCTGTCGACGCGTTCGA
TTGTCGGGAGGAACTGGATAAGCACGTGGCCAAATATGCAGTCAACCGTG
CGGTGCTCTTGGAGGGGTTGAAGGAGGTGGGTTTGCACAAGGTCTCGCCT
GCAGATGGTGCTTTCTACGTGTATGTGGACGTGTCGGATGACTTGGAGGA
TGCCGTGACGTTCGCCAAGGATTTTTTGGACCAGGCGCGAGTGGCGGTGA
CCCCTGGGGTTGACTTCGAGGACCCGACCACGGGGCTTGGGCACAAGCGT
TTGCGGTTCAGCTATTGTGGGGCGACGGAGGAGATCATTGAGGCCATGAA
ACGTCTGAAGGCCTTTTGGCGGACGTATCCCGGGAGGAAAAACAAGCAGG
CATAAAGGTGCAGGCTTGTGGTTGGTTGATTGATACATAGATACGGACAG
AGATGCGGTCTGCTAAATTCAGAGCGTTTCAATGGGCGATGAGGGGGATA
AAGAAGGAAGACTGACTTCTGGGAA

Coding sequence (CDS) from alignment at scaffold_14:442785..444609+

>mRNA_6065 ID=mRNA_6065|Name=jgi.p|Nanoce1779_2|593641|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_14:442785..444609+ (Nannochloropsis oceanica)
ATGGCGTGCATTGGAGGCCCACCGCTTCTAGCAACTCTGATGGGAATGGT
GTTGGCCTTGCTGGCTTTTCCGGGCGCTACTGCAGGTCCCTCCGAGTCTA
TCCGCAGTTCCTCCCTCCCCTCCTTCAAGGTCATGGAAATTCTAGGCCAA
GCAATCGATCTTGAGAAAGCCGGTCACAAAGTCTGCCACTTAGAGGTCGG
GCAACCCCAGAGCGGGGCCCCCAAAAAGGTGCTGAAACAGGCCGAAACCC
AGCTCCGCTCTAATAGGCTGGGTTACACTACCTCCCAAGGAATCGAGCCT
TTGCGGAAACGCATCGCCCAACATTATGCCGAGCGCTATACGAAGAAAGA
AGGCGAGTCGAATGTCCCCCTTCAGGTGGATCCGAACAATGTCGTGGTCA
CCACGGGGAGCTCCGGTGCATTTCTCATCACGTTCCTCGCGGCTTTTGAC
GTAGGCGACGTCGTGTGCATTGCTTCGGCGGGGTACCCCTGCTACAGAAA
TATTCTCAATGCCCTCGGCTGCGAAGTTGTGTCTATTCCCGTGAATGAAA
ATTTTAAGGTCACGGCCGCTGAGCTTGACGCGACGGTCAAGCGGTTGGCA
GGGAAGAGAAAGAAGGTCAGGGGCCTTATCTTGTCTTCGCCCGGCAATCC
GACGGGAGCCATGTTGACACCCGCGGAGCTGAAGGGGCTATGCGAGTATT
GCGATGCTGCCGATATAACCTTTATTTCGGATGAGATTTACCATCACATC
TCCTACGGGCAGCCGGAGGCCTCGGCGCTCAGCTTTTCCGACAAGGCCAT
TGTGATCAATTCCTTCTCGAAGTACTACTCCATGACAGGCTGGCGCCTCG
GGTGGATGGTTGCCCCTGCCTCCTTCGTTCCCGCCCTTAATCGCCTCTCA
CAGAATTTTTTTTTAAACTCGCCCACCCTCTCGCAATACGCGGCTGTCGA
CGCGTTCGATTGTCGGGAGGAACTGGATAAGCACGTGGCCAAATATGCAG
TCAACCGTGCGGTGCTCTTGGAGGGGTTGAAGGAGGTGGGTTTGCACAAG
GTCTCGCCTGCAGATGGTGCTTTCTACGTGTATGTGGACGTGTCGGATGA
CTTGGAGGATGCCGTGACGTTCGCCAAGGATTTTTTGGACCAGGCGCGAG
TGGCGGTGACCCCTGGGGTTGACTTCGAGGACCCGACCACGGGGCTTGGG
CACAAGCGTTTGCGGTTCAGCTATTGTGGGGCGACGGAGGAGATCATTGA
GGCCATGAAACGTCTGAAGGCCTTTTGGCGGACGTATCCCGGGAGGAAAA
ACAAGCAGGCATAAATGGCGTGCATTGGAGGCCCACCGCTTCTAGCAACT
CTGATGGGAATGGTGTTGGCCTTGCTGGCTTTTCCGGGCGCTACTGCAGG
TCCCTCCGAGTCTATCCGCAGTTCCTCCCTCCCCTCCTTCAAGGTCATGG
AAATTCTAGGCCAAGCAATCGATCTTGAGAAAGCCGGTCACAAAGTCTGC
CACTTAGAGGTCGGGCAACCCCAGAGCGGGGCCCCCAAAAAGGTGCTGAA
ACAGGCCGAAACCCAGCTCCGCTCTAATAGGCTGGGTTACACTACCTCCC
AAGGAATCGAGCCTTTGCGGAAACGCATCGCCCAACATTATGCCGAGCGC
TATACGAAGAAAGAAGGCGAGTCGAATGTCCCCCTTCAGGTGGATCCGAA
CAATGTCGTGGTCACCACGGGGAGCTCCGGTGCATTTCTCATCACGTTCC
TCGCGGCTTTTGACGTAGGCGACGTCGTGTGCATTGCTTCGGCGGGGTAC
CCCTGCTACAGAAATATTCTCAATGCCCTCGGCTGCGAAGTTGTGTCTAT
TCCCGTGAATGAAAATTTTAAGGTCACGGCCGCTGAGCTTGACGCGACGG
TCAAGCGGTTGGCAGGGAAGAGAAAGAAGGTCAGGGGCCTTATCTTGTCT
TCGCCCGGCAATCCGACGGGAGCCATGTTGACACCCGCGGAGCTGAAGGG
GCTATGCGAGTATTGCGATGCTGCCGATATAACCTTTATTTCGGATGAGA
TTTACCATCACATCTCCTACGGGCAGCCGGAGGCCTCGGCGCTCAGCTTT
TCCGACAAGGCCATTGTGATCAATTCCTTCTCGAAGTACTACTCCATGAC
AGGCTGGCGCCTCGGGTGGATGGTTGCCCCTGCCTCCTTCGTTCCCGCCC
TTAATCGCCTCTCACAGAATTTTTTTTTAAACTCGCCCACCCTCTCGCAA
TACGCGGCTGTCGACGCGTTCGATTGTCGGGAGGAACTGGATAAGCACGT
GGCCAAATATGCAGTCAACCGTGCGGTGCTCTTGGAGGGGTTGAAGGAGG
TGGGTTTGCACAAGGTCTCGCCTGCAGATGGTGCTTTCTACGTGTATGTG
GACGTGTCGGATGACTTGGAGGATGCCGTGACGTTCGCCAAGGATTTTTT
GGACCAGGCGCGAGTGGCGGTGACCCCTGGGGTTGACTTCGAGGACCCGA
CCACGGGGCTTGGGCACAAGCGTTTGCGGTTCAGCTATTGTGGGGCGACG
GAGGAGATCATTGAGGCCATGAAACGTCTGAAGGCCTTTTGGCGGACGTA
TCCCGGGAGGAAAAACAAGCAGGCATAA

Synonyms

Publications