jgi.p|Nanoce1779_2|529704, mRNA_6063 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|529704
Unique Name	mRNA_6063
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1311
Alignment location	scaffold_14:438300..439610 +

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Properties


Property Name	Value
TranscriptId	529790
Track	FilteredModels2
ProteinId	529704

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:438300..439610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529704	gene_6063	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|529704	mRNA_6063-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6063	CDS_6063	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:438300..439610+
coding sequence from alignment at scaffold_14:438300..439610+

mRNA sequence

>mRNA_6063 ID=mRNA_6063|Name=jgi.p|Nanoce1779_2|529704|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp
ATGGTCCAGCAGTCCGACTTGGCCTTCCGGACATTGGTACGGCGCTATGG
CGTTGGTCTGGCGTACACACAGATGTTACACGCGTGGAACTTTGCGCATG
TAAAAGTCTTCCGTCAGGAAAATTGGGATGGCGTTGGGAACGGACCCGAG
GGTGCCTTTGACCGCCCACTGATTGCTCAATTCGCTGGGGACAATGCTGA
TGACCTTGTGCGTGCGGCGGAATACATTCAACACGAAGTCGACGCCGTCG
ATTTGAATTTGGGTTGTCCACAGAAAATAGCGCGCCGCGGGCACTACGGT
GCATTTTTGCTGGAAGAGCGAGAGCTGGTTGTGGGCCTCCTCGCTCACAT
GGTTCGGAAACTTACGGTGCCCGTCACAGCCAAAATTCGTTTATTACCCA
ACGAGCGTGACACCTTGGAATTAGCCAAAGCCATAGAGGGGACGGGTGTG
GCGCTCGTGACTATTCATGGGAGGACGCGCGAACAAAATAAGATCTCGGT
GGGTAGTGCTGACTGGGCCGCCATCCGAAAAGTGAAGGAAGGCTTAAGCA
TTCCCGTGGTGGCGAATGGAGGGGTAGAGACCTTTGAAGATGCGGTGCGA
TGCCAAGAAGAGACGGGAGCTGACGCTGTCATGTCTTCCGAAGGGTTGCT
TGAAAATCCCTCCTTGTTTCGGCCGGGCTCATCCTTGCTAGTGGAAGGAA
GTGGCGGGCAATCCCTGAGCTCCTCGTTTGGATCGAGGGAAGAGGAGGCT
TATGCTTTGACGCAGCGACAGTTGGGTTTCGCGATGGAATACCTGGAGCT
CGCAGGACAATATTGGCCACGGGAAGGAGTAGCATCAATCAAGGGACATT
TGTTCAAAATGCTCTATCAGTTGCTAGAGCTGCCAGTGAACCATGATCTG
AGAGACCAGATGGGAGCCAAGGGGAACACGTTGAAGGACTACAAACGCGT
AGTGCAGGAATTGCAGGAGACAAGGTACCCAAATGTGGACACCGCACTGA
TCTTGACGGGGGGGGCTGTGGTTGCGCCTGTGAGTTGGTATCGCCGGCAT
AGGGAAGGACATGCCTTGGCTCTACAGAGAGAGAATCGCGCTCTCGCCTC
GCCAGAAGAGACGATGTTGGGGCTCAAGGAACGCTTGCTTCAGAAACGTG
CCGCGCGTGAATTGGCCGCGGCAGGAGTGGCAGCAGCAGCCGCAGCAGCA
GCGGCAGTAGCAGCGACAGCAGACGCAGGAGCAGCTGGGGGGCAGGCTGT
CAGTGGTAGTAGGGTAGGTGTCAGCGAAAGAGAGACCGCGCCAGCTGAAG
CATTGGCATAA

protein sequence of jgi.p|Nanoce1779_2|529704

>mRNA_6063-protein ID=mRNA_6063-protein|Name=jgi.p|Nanoce1779_2|529704|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MVQQSDLAFRTLVRRYGVGLAYTQMLHAWNFAHVKVFRQENWDGVGNGPE
GAFDRPLIAQFAGDNADDLVRAAEYIQHEVDAVDLNLGCPQKIARRGHYG
AFLLEERELVVGLLAHMVRKLTVPVTAKIRLLPNERDTLELAKAIEGTGV
ALVTIHGRTREQNKISVGSADWAAIRKVKEGLSIPVVANGGVETFEDAVR
CQEETGADAVMSSEGLLENPSLFRPGSSLLVEGSGGQSLSSSFGSREEEA
YALTQRQLGFAMEYLELAGQYWPREGVASIKGHLFKMLYQLLELPVNHDL
RDQMGAKGNTLKDYKRVVQELQETRYPNVDTALILTGGAVVAPVSWYRRH
REGHALALQRENRALASPEETMLGLKERLLQKRAARELAAAGVAAAAAAA
AAVAATADAGAAGGQAVSGSRVGVSERETAPAEALA*

mRNA from alignment at scaffold_14:438300..439610+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6063 ID=mRNA_6063|Name=jgi.p|Nanoce1779_2|529704|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp|location=Sequence derived from alignment at scaffold_14:438300..439610+ (Nannochloropsis oceanica)
ATGGTCCAGCAGTCCGACTTGGCCTTCCGGACATTGGTACGGCGCTATGG
CGTTGGTCTGGCGTACACACAGATGTTACACGCGTGGAACTTTGCGCATG
TAAAAGTCTTCCGTCAGGAAAATTGGGATGGCGTTGGGAACGGACCCGAG
GGTGCCTTTGACCGCCCACTGATTGCTCAATTCGCTGGGGACAATGCTGA
TGACCTTGTGCGTGCGGCGGAATACATTCAACACGAAGTCGACGCCGTCG
ATTTGAATTTGGGTTGTCCACAGAAAATAGCGCGCCGCGGGCACTACGGT
GCATTTTTGCTGGAAGAGCGAGAGCTGGTTGTGGGCCTCCTCGCTCACAT
GGTTCGGAAACTTACGGTGCCCGTCACAGCCAAAATTCGTTTATTACCCA
ACGAGCGTGACACCTTGGAATTAGCCAAAGCCATAGAGGGGACGGGTGTG
GCGCTCGTGACTATTCATGGGAGGACGCGCGAACAAAATAAGATCTCGGT
GGGTAGTGCTGACTGGGCCGCCATCCGAAAAGTGAAGGAAGGCTTAAGCA
TTCCCGTGGTGGCGAATGGAGGGGTAGAGACCTTTGAAGATGCGGTGCGA
TGCCAAGAAGAGACGGGAGCTGACGCTGTCATGTCTTCCGAAGGGTTGCT
TGAAAATCCCTCCTTGTTTCGGCCGGGCTCATCCTTGCTAGTGGAAGGAA
GTGGCGGGCAATCCCTGAGCTCCTCGTTTGGATCGAGGGAAGAGGAGGCT
TATGCTTTGACGCAGCGACAGTTGGGTTTCGCGATGGAATACCTGGAGCT
CGCAGGACAATATTGGCCACGGGAAGGAGTAGCATCAATCAAGGGACATT
TGTTCAAAATGCTCTATCAGTTGCTAGAGCTGCCAGTGAACCATGATCTG
AGAGACCAGATGGGAGCCAAGGGGAACACGTTGAAGGACTACAAACGCGT
AGTGCAGGAATTGCAGGAGACAAGGTACCCAAATGTGGACACCGCACTGA
TCTTGACGGGGGGGGCTGTGGTTGCGCCTGTGAGTTGGTATCGCCGGCAT
AGGGAAGGACATGCCTTGGCTCTACAGAGAGAGAATCGCGCTCTCGCCTC
GCCAGAAGAGACGATGTTGGGGCTCAAGGAACGCTTGCTTCAGAAACGTG
CCGCGCGTGAATTGGCCGCGGCAGGAGTGGCAGCAGCAGCCGCAGCAGCA
GCGGCAGTAGCAGCGACAGCAGACGCAGGAGCAGCTGGGGGGCAGGCTGT
CAGTGGTAGTAGGGTAGGTGTCAGCGAAAGAGAGACCGCGCCAGCTGAAG
CATTGGCATAA

Coding sequence (CDS) from alignment at scaffold_14:438300..439610+

>mRNA_6063 ID=mRNA_6063|Name=jgi.p|Nanoce1779_2|529704|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at scaffold_14:438300..439610+ (Nannochloropsis oceanica)
ATGGTCCAGCAGTCCGACTTGGCCTTCCGGACATTGGTACGGCGCTATGG
CGTTGGTCTGGCGTACACACAGATGTTACACGCGTGGAACTTTGCGCATG
TAAAAGTCTTCCGTCAGGAAAATTGGGATGGCGTTGGGAACGGACCCGAG
GGTGCCTTTGACCGCCCACTGATTGCTCAATTCGCTGGGGACAATGCTGA
TGACCTTGTGCGTGCGGCGGAATACATTCAACACGAAGTCGACGCCGTCG
ATTTGAATTTGGGTTGTCCACAGAAAATAGCGCGCCGCGGGCACTACGGT
GCATTTTTGCTGGAAGAGCGAGAGCTGGTTGTGGGCCTCCTCGCTCACAT
GGTTCGGAAACTTACGGTGCCCGTCACAGCCAAAATTCGTTTATTACCCA
ACGAGCGTGACACCTTGGAATTAGCCAAAGCCATAGAGGGGACGGGTGTG
GCGCTCGTGACTATTCATGGGAGGACGCGCGAACAAAATAAGATCTCGGT
GGGTAGTGCTGACTGGGCCGCCATCCGAAAAGTGAAGGAAGGCTTAAGCA
TTCCCGTGGTGGCGAATGGAGGGGTAGAGACCTTTGAAGATGCGGTGCGA
TGCCAAGAAGAGACGGGAGCTGACGCTGTCATGTCTTCCGAAGGGTTGCT
TGAAAATCCCTCCTTGTTTCGGCCGGGCTCATCCTTGCTAGTGGAAGGAA
GTGGCGGGCAATCCCTGAGCTCCTCGTTTGGATCGAGGGAAGAGGAGGCT
TATGCTTTGACGCAGCGACAGTTGGGTTTCGCGATGGAATACCTGGAGCT
CGCAGGACAATATTGGCCACGGGAAGGAGTAGCATCAATCAAGGGACATT
TGTTCAAAATGCTCTATCAGTTGCTAGAGCTGCCAGTGAACCATGATCTG
AGAGACCAGATGGGAGCCAAGGGGAACACGTTGAAGGACTACAAACGCGT
AGTGCAGGAATTGCAGGAGACAAGGTACCCAAATGTGGACACCGCACTGA
TCTTGACGGGGGGGGCTGTGGTTGCGCCTGTGAGTTGGTATCGCCGGCAT
AGGGAAGGACATGCCTTGGCTCTACAGAGAGAGAATCGCGCTCTCGCCTC
GCCAGAAGAGACGATGTTGGGGCTCAAGGAACGCTTGCTTCAGAAACGTG
CCGCGCGTGAATTGGCCGCGGCAGGAGTGGCAGCAGCAGCCGCAGCAGCA
GCGGCAGTAGCAGCGACAGCAGACGCAGGAGCAGCTGGGGGGCAGGCTGT
CAGTGGTAGTAGGGTAGGTGTCAGCGAAAGAGAGACCGCGCCAGCTGAAG
CATTGGCATAA

Synonyms

Publications