jgi.p|Nanoce1779_2|593628, mRNA_6061 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593628
Unique Name	mRNA_6061
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2555
Alignment location	scaffold_14:434492..437046 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593714
Track	FilteredModels2
ProteinId	593628

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:434492..437046 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593628	gene_6061	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593628	mRNA_6061-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6061	CDS_6061	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:434492..437046+
coding sequence from alignment at scaffold_14:434492..437046+

mRNA sequence

>mRNA_6061 ID=mRNA_6061|Name=jgi.p|Nanoce1779_2|593628|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp
ACAGGCCTGACTTCATTCGCTGCCGCCGTTCTGGCCCAGTTGTCCTCGCC
CTCCGCCACCCTTCCGCGCGCATCCTAGCCTCCTTACATTTCGCTCGTTC
CTTCACTTACGCCCTCCGACGCCCAAGCACACCCAAGTGCACACGAACCA
ATGGTACATCCCTTAACCTCGCCCAAGCGACTCCACGAGTTTGTGGCGCA
CACTGTCCAGGTGAATGCAGTTACAATTGCCCCATCTCATCGCTTGGTTG
CCACGGGCGGGGACGATAATGTTGTCAACGTGTGGCGTGTGGACAATGCC
AGCAACATCGCAAGCTTGGCGGGGCACACCTCGCCGGTCATGTGCCTCAC
CATTGACCCGGCTTCAGAGCGGTTCGTCGCGGCGGGATCGGAGGGTGGGG
GCATCAAGGTCTTTGACATGGCAAGCGGGAAACTTGTACGGTCTCTGACA
GGGCACGCGGCGGGCGTCACGTGCCTGAATTACGATGCTGCAGCGGGCAT
GTTGATTTCTGGCTCTCTCGATGCTAGCTTCAAGATTTGGGATGTACGAA
CGAAGAAGTGTGTCATGCACCACAAGGGCCATAGCACGGATGTGACGGAC
GCTCAATTCTCGCCTGACGGGCGATGGTGCTGCAGCTCCGGCAAGGATGG
TGTCATGAATCTCTGGGACCTGCGGGATCGTGAGACAATTTACTCCTTCG
AGTTGGAAACCAAGCAAGGTAAACCCTCCCCGATCCTGCACTTCAACTTC
CACCCGGCGCTGCCGATGCTGGCTACTTCTACGGGGGACCGTTCCTTGAG
GTTGTTTCACACGGACAACTTCAAGCTTTTGGCCTCCTCTTCCTTCCCGG
GTGAGACCAGCCCAGCGAGCGCCATGGCTTTCGATGGGCACGGACATTTA
TGCACGGCCACGACCAATCGTCTGCGTGTTTTGAAGGGTGACACGCTGGA
GGTCATGGGGGATGCCGGGGCTGGGGCTATTGACGCTCCGTGGGGCAACA
AGGTGGCGATGCTCTCCTGCCACGATGGTCAGCTTTTGGCAATGGGCGTG
CGACATAATGTTGTGTCCCTTTATACTACTCAAATGGACTCACCAGCAGC
TGCAGAAACAGCAGTGCCAGCAGCTGCGGGCTCGACGGCAAGAGCAGCTT
TAGCAGCAATGGAGGAGGAAACCCCACTTCCTCAAGACATGGCTTTTACG
CCTTCCCGCATCACACGTTCCGTAACGCGCCGGGCTTCCCTGTTATCACC
ACCTCCAGCCCTCTCGGCTGACACTGGTGCTGTATCTGCTTCTGTTGCTA
TTTCTGCCGTGGCGCCTGCCGAAGAAATCGGAGGAGGGAGGCTGGCACCA
TCACAGCACCCGTCAAAGAAGTGCGCCGCCTCCACCGTCAGTAGCACCAG
CAACAACAAGAGCAAGCAACATCAGCATGACAAGGAGAACCAAAGCAGCA
CCAGCACCAGCAATACCATCTCCAGCACCACCACGAGCAGCAGCCGACAG
GCCGCCGGAGCACCCGGTGGTGCAAAGACCAGCAGCACGACGACATTAAC
AAGCCAAAAAAAGGAGGAGAAAGTACCCTTGGACCCGCAAGCCCGTCTGA
GTCGTGCCGACGACGAAATCATCGCGGGAACAATGCTGCATCGCAAGGTC
CTCATGGGAGCTTTGTCAGCCCGCCTGACTCACTTACAGCGGTTGAGGGA
CCTCTGGAAGAAGGGCCGAGTAAAGGAAACTTTTTTGTTACTCTACCGTC
TGCACGAAGCCACCCCTGAAGATCAAGGTCGGCTGACCGTTCTCGCGGAC
TTCCTCCGAGCAATCGACCTCATAGAATGCGCGAAGGAATGTGGGCCCGT
CACACTTGAGGTGTCTACACCCCTCCTTCCCGTGTTGGCAAGTTTGCTTG
CACTGGATTTTGAGGGGCACGTGCTGGCGGGGTTAAAGACGATGACATCG
TTGCTAGTCTTGTGTGGGGGCGACGTGAGGGAGATTCTTCGGGCGCCGGT
AGGGGCGGGAGTAGATTTGAGTCGGGAGGAAAGGGTGGAGAAATGTCGGG
TGTTTCATCTGGCGATGCAGGAGGCGCAAGAACGGGTCCAGAAGTTGGGG
GGGAAGGAGGGAGGGAGGGTGTTCAAGAGATCGTCACCTGTGCATATGGC
GGTGGAGAAAGCGCAGAGGGAACTGACGGGGTTTCTAAATGCCTAGTTGG
GAGAAGGAGGGAAGGAAGGACGGGACAGACGTCGAGAGGGCAGTCGTCGC
CTATGCTCCTGGTTGTGGATTCCGTTCGCGGTGAAGGAAAAGACGATGGG
GAAAAAGAAGAAAATGTCCTTGTCTGAGAAAGAAAATGAAAAGGAGTGCG
GCTGTGTGTGGAGAGCCTGAAATACGGTGGGTGTCTAAGAGAGTGTGACG
AAAAGGAAAGAAGGTAACCTTTATGTAAAGATAAGATGAGAGAGAAAGGA
GGGGATACAATCATGCCTTGCCAGCCGGCTAAAATTCTGCGTTGGCGAAT
AAATTGCTGGCAGTGAGATATCACTTGGTAAAGAAAGCGAAGAAAACGAG
TGATA

protein sequence of jgi.p|Nanoce1779_2|593628

>mRNA_6061-protein ID=mRNA_6061-protein|Name=jgi.p|Nanoce1779_2|593628|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp
MVHPLTSPKRLHEFVAHTVQVNAVTIAPSHRLVATGGDDNVVNVWRVDNA
SNIASLAGHTSPVMCLTIDPASERFVAAGSEGGGIKVFDMASGKLVRSLT
GHAAGVTCLNYDAAAGMLISGSLDASFKIWDVRTKKCVMHHKGHSTDVTD
AQFSPDGRWCCSSGKDGVMNLWDLRDRETIYSFELETKQGKPSPILHFNF
HPALPMLATSTGDRSLRLFHTDNFKLLASSSFPGETSPASAMAFDGHGHL
CTATTNRLRVLKGDTLEVMGDAGAGAIDAPWGNKVAMLSCHDGQLLAMGV
RHNVVSLYTTQMDSPAAAETAVPAAAGSTARAALAAMEEETPLPQDMAFT
PSRITRSVTRRASLLSPPPALSADTGAVSASVAISAVAPAEEIGGGRLAP
SQHPSKKCAASTVSSTSNNKSKQHQHDKENQSSTSTSNTISSTTTSSSRQ
AAGAPGGAKTSSTTTLTSQKKEEKVPLDPQARLSRADDEIIAGTMLHRKV
LMGALSARLTHLQRLRDLWKKGRVKETFLLLYRLHEATPEDQGRLTVLAD
FLRAIDLIECAKECGPVTLEVSTPLLPVLASLLALDFEGHVLAGLKTMTS
LLVLCGGDVREILRAPVGAGVDLSREERVEKCRVFHLAMQEAQERVQKLG
GKEGGRVFKRSSPVHMAVEKAQRELTGFLNA*

mRNA from alignment at scaffold_14:434492..437046+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6061 ID=mRNA_6061|Name=jgi.p|Nanoce1779_2|593628|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp|location=Sequence derived from alignment at scaffold_14:434492..437046+ (Nannochloropsis oceanica)
ACAGGCCTGACTTCATTCGCTGCCGCCGTTCTGGCCCAGTTGTCCTCGCC
CTCCGCCACCCTTCCGCGCGCATCCTAGCCTCCTTACATTTCGCTCGTTC
CTTCACTTACGCCCTCCGACGCCCAAGCACACCCAAGTGCACACGAACCA
ATGGTACATCCCTTAACCTCGCCCAAGCGACTCCACGAGTTTGTGGCGCA
CACTGTCCAGGTGAATGCAGTTACAATTGCCCCATCTCATCGCTTGGTTG
CCACGGGCGGGGACGATAATGTTGTCAACGTGTGGCGTGTGGACAATGCC
AGCAACATCGCAAGCTTGGCGGGGCACACCTCGCCGGTCATGTGCCTCAC
CATTGACCCGGCTTCAGAGCGGTTCGTCGCGGCGGGATCGGAGGGTGGGG
GCATCAAGGTCTTTGACATGGCAAGCGGGAAACTTGTACGGTCTCTGACA
GGGCACGCGGCGGGCGTCACGTGCCTGAATTACGATGCTGCAGCGGGCAT
GTTGATTTCTGGCTCTCTCGATGCTAGCTTCAAGATTTGGGATGTACGAA
CGAAGAAGTGTGTCATGCACCACAAGGGCCATAGCACGGATGTGACGGAC
GCTCAATTCTCGCCTGACGGGCGATGGTGCTGCAGCTCCGGCAAGGATGG
TGTCATGAATCTCTGGGACCTGCGGGATCGTGAGACAATTTACTCCTTCG
AGTTGGAAACCAAGCAAGGTAAACCCTCCCCGATCCTGCACTTCAACTTC
CACCCGGCGCTGCCGATGCTGGCTACTTCTACGGGGGACCGTTCCTTGAG
GTTGTTTCACACGGACAACTTCAAGCTTTTGGCCTCCTCTTCCTTCCCGG
GTGAGACCAGCCCAGCGAGCGCCATGGCTTTCGATGGGCACGGACATTTA
TGCACGGCCACGACCAATCGTCTGCGTGTTTTGAAGGGTGACACGCTGGA
GGTCATGGGGGATGCCGGGGCTGGGGCTATTGACGCTCCGTGGGGCAACA
AGGTGGCGATGCTCTCCTGCCACGATGGTCAGCTTTTGGCAATGGGCGTG
CGACATAATGTTGTGTCCCTTTATACTACTCAAATGGACTCACCAGCAGC
TGCAGAAACAGCAGTGCCAGCAGCTGCGGGCTCGACGGCAAGAGCAGCTT
TAGCAGCAATGGAGGAGGAAACCCCACTTCCTCAAGACATGGCTTTTACG
CCTTCCCGCATCACACGTTCCGTAACGCGCCGGGCTTCCCTGTTATCACC
ACCTCCAGCCCTCTCGGCTGACACTGGTGCTGTATCTGCTTCTGTTGCTA
TTTCTGCCGTGGCGCCTGCCGAAGAAATCGGAGGAGGGAGGCTGGCACCA
TCACAGCACCCGTCAAAGAAGTGCGCCGCCTCCACCGTCAGTAGCACCAG
CAACAACAAGAGCAAGCAACATCAGCATGACAAGGAGAACCAAAGCAGCA
CCAGCACCAGCAATACCATCTCCAGCACCACCACGAGCAGCAGCCGACAG
GCCGCCGGAGCACCCGGTGGTGCAAAGACCAGCAGCACGACGACATTAAC
AAGCCAAAAAAAGGAGGAGAAAGTACCCTTGGACCCGCAAGCCCGTCTGA
GTCGTGCCGACGACGAAATCATCGCGGGAACAATGCTGCATCGCAAGGTC
CTCATGGGAGCTTTGTCAGCCCGCCTGACTCACTTACAGCGGTTGAGGGA
CCTCTGGAAGAAGGGCCGAGTAAAGGAAACTTTTTTGTTACTCTACCGTC
TGCACGAAGCCACCCCTGAAGATCAAGGTCGGCTGACCGTTCTCGCGGAC
TTCCTCCGAGCAATCGACCTCATAGAATGCGCGAAGGAATGTGGGCCCGT
CACACTTGAGGTGTCTACACCCCTCCTTCCCGTGTTGGCAAGTTTGCTTG
CACTGGATTTTGAGGGGCACGTGCTGGCGGGGTTAAAGACGATGACATCG
TTGCTAGTCTTGTGTGGGGGCGACGTGAGGGAGATTCTTCGGGCGCCGGT
AGGGGCGGGAGTAGATTTGAGTCGGGAGGAAAGGGTGGAGAAATGTCGGG
TGTTTCATCTGGCGATGCAGGAGGCGCAAGAACGGGTCCAGAAGTTGGGG
GGGAAGGAGGGAGGGAGGGTGTTCAAGAGATCGTCACCTGTGCATATGGC
GGTGGAGAAAGCGCAGAGGGAACTGACGGGGTTTCTAAATGCCTAGTTGG
GAGAAGGAGGGAAGGAAGGACGGGACAGACGTCGAGAGGGCAGTCGTCGC
CTATGCTCCTGGTTGTGGATTCCGTTCGCGGTGAAGGAAAAGACGATGGG
GAAAAAGAAGAAAATGTCCTTGTCTGAGAAAGAAAATGAAAAGGAGTGCG
GCTGTGTGTGGAGAGCCTGAAATACGGTGGGTGTCTAAGAGAGTGTGACG
AAAAGGAAAGAAGGTAACCTTTATGTAAAGATAAGATGAGAGAGAAAGGA
GGGGATACAATCATGCCTTGCCAGCCGGCTAAAATTCTGCGTTGGCGAAT
AAATTGCTGGCAGTGAGATATCACTTGGTAAAGAAAGCGAAGAAAACGAG
TGATA

Coding sequence (CDS) from alignment at scaffold_14:434492..437046+

>mRNA_6061 ID=mRNA_6061|Name=jgi.p|Nanoce1779_2|593628|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at scaffold_14:434492..437046+ (Nannochloropsis oceanica)
ATGGTACATCCCTTAACCTCGCCCAAGCGACTCCACGAGTTTGTGGCGCA
CACTGTCCAGGTGAATGCAGTTACAATTGCCCCATCTCATCGCTTGGTTG
CCACGGGCGGGGACGATAATGTTGTCAACGTGTGGCGTGTGGACAATGCC
AGCAACATCGCAAGCTTGGCGGGGCACACCTCGCCGGTCATGTGCCTCAC
CATTGACCCGGCTTCAGAGCGGTTCGTCGCGGCGGGATCGGAGGGTGGGG
GCATCAAGGTCTTTGACATGGCAAGCGGGAAACTTGTACGGTCTCTGACA
GGGCACGCGGCGGGCGTCACGTGCCTGAATTACGATGCTGCAGCGGGCAT
GTTGATTTCTGGCTCTCTCGATGCTAGCTTCAAGATTTGGGATGTACGAA
CGAAGAAGTGTGTCATGCACCACAAGGGCCATAGCACGGATGTGACGGAC
GCTCAATTCTCGCCTGACGGGCGATGGTGCTGCAGCTCCGGCAAGGATGG
TGTCATGAATCTCTGGGACCTGCGGGATCGTGAGACAATTTACTCCTTCG
AGTTGGAAACCAAGCAAGGTAAACCCTCCCCGATCCTGCACTTCAACTTC
CACCCGGCGCTGCCGATGCTGGCTACTTCTACGGGGGACCGTTCCTTGAG
GTTGTTTCACACGGACAACTTCAAGCTTTTGGCCTCCTCTTCCTTCCCGG
GTGAGACCAGCCCAGCGAGCGCCATGGCTTTCGATGGGCACGGACATTTA
TGCACGGCCACGACCAATCGTCTGCGTGTTTTGAAGGGTGACACGCTGGA
GGTCATGGGGGATGCCGGGGCTGGGGCTATTGACGCTCCGTGGGGCAACA
AGGTGGCGATGCTCTCCTGCCACGATGGTCAGCTTTTGGCAATGGGCGTG
CGACATAATGTTGTGTCCCTTTATACTACTCAAATGGACTCACCAGCAGC
TGCAGAAACAGCAGTGCCAGCAGCTGCGGGCTCGACGGCAAGAGCAGCTT
TAGCAGCAATGGAGGAGGAAACCCCACTTCCTCAAGACATGGCTTTTACG
CCTTCCCGCATCACACGTTCCGTAACGCGCCGGGCTTCCCTGTTATCACC
ACCTCCAGCCCTCTCGGCTGACACTGGTGCTGTATCTGCTTCTGTTGCTA
TTTCTGCCGTGGCGCCTGCCGAAGAAATCGGAGGAGGGAGGCTGGCACCA
TCACAGCACCCGTCAAAGAAGTGCGCCGCCTCCACCGTCAGTAGCACCAG
CAACAACAAGAGCAAGCAACATCAGCATGACAAGGAGAACCAAAGCAGCA
CCAGCACCAGCAATACCATCTCCAGCACCACCACGAGCAGCAGCCGACAG
GCCGCCGGAGCACCCGGTGGTGCAAAGACCAGCAGCACGACGACATTAAC
AAGCCAAAAAAAGGAGGAGAAAGTACCCTTGGACCCGCAAGCCCGTCTGA
GTCGTGCCGACGACGAAATCATCGCGGGAACAATGCTGCATCGCAAGGTC
CTCATGGGAGCTTTGTCAGCCCGCCTGACTCACTTACAGCGGTTGAGGGA
CCTCTGGAAGAAGGGCCGAGTAAAGGAAACTTTTTTGTTACTCTACCGTC
TGCACGAAGCCACCCCTGAAGATCAAGGTCGGCTGACCGTTCTCGCGGAC
TTCCTCCGAGCAATCGACCTCATAGAATGCGCGAAGGAATGTGGGCCCGT
CACACTTGAGGTGTCTACACCCCTCCTTCCCGTGTTGGCAAGTTTGCTTG
CACTGGATTTTGAGGGGCACGTGCTGGCGGGGTTAAAGACGATGACATCG
TTGCTAGTCTTGTGTGGGGGCGACGTGAGGGAGATTCTTCGGGCGCCGGT
AGGGGCGGGAGTAGATTTGAGTCGGGAGGAAAGGGTGGAGAAATGTCGGG
TGTTTCATCTGGCGATGCAGGAGGCGCAAGAACGGGTCCAGAAGTTGGGG
GGGAAGGAGGGAGGGAGGGTGTTCAAGAGATCGTCACCTGTGCATATGGC
GGTGGAGAAAGCGCAGAGGGAACTGACGGGGTTTCTAAATGCCTAG

Synonyms

Publications