jgi.p|Nanoce1779_2|593627, mRNA_6060 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593627
Unique NamemRNA_6060
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1876
Alignment locationscaffold_14:432252..434254 -

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Properties
Property NameValue
TranscriptId593713
TrackFilteredModels2
ProteinId593627
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:432252..434254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593627gene_6060Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593627mRNA_6060-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6060CDS_6060Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6060 ID=mRNA_6060|Name=jgi.p|Nanoce1779_2|593627|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp
ACAGGCTTTGCGAAGGGCGGGAGTCGGAAGACGTTTACCCGACGCCTCCC
TGTGCTCGTCGCAGTCGATCGATCATCCAGTCCCAGACATCAGAGTACGG
CCCACACGCTCCACACAACCGCTGCCTCAGCCTCCATGGCGCCCCAACAA
AAAGCCAATTTTTCCTGCACTAGCGCTTCCACTTCCATTGAGGACATGGG
TACCAGCACTAATAAACTAACGCCCTTCTCCAAGGCTCCAACGGCCGCCT
CGACCACGCATGCATACACAGCGAGCAGAGCAGCGGTTGCCGCTGCGGCA
CTCTCCCCACCCTTGCCAGCGGATGAAGAAGATGGGCAGAAAGGCGAAAT
ACTGGCTGGCACTCACTTCATCCTGGAAGGCCCCGCCTCCGGGAAGCTGG
TTGTGTGTGTCCCGGGTTTGGGTGGGCCTCACTGGTACTTTGACGAGGTT
GCCCCCTTCTTGCTTCAAGCAGGTTTCAGGGTTTTGCGGTACGACTTGGT
GGGCCGTGGGCATTCGAAGCCACCATCACGCACTCGTCGGCCGTCGTGCT
TTTGTAATGGCGTGGCCCGGGAGAAAGATCCATATGGCATGGTTGGTCAT
GTCGCCCAACTTCGTCGCCTACTGGTAAACCTCGATCTCGTTGCCAAAAA
CAACGGCGACGATCGAATTTCTTCCTCAGCCTGCCCCCAGCCTGACTGTG
ATGATACCGACCTGAGCGAGATCGACGATGAAATTCTCTCCCCCTTGCCC
ATGTCTGCGATTCACTTGATCGGCCATAGCATGGGAGGGGCCATTGCCGT
TGGGTACGCCGATTGCTATCCTGAAGATGTGGCCTCCCTCACCTTGCTCA
CTCCCGCCGGCTTGATGGACAAAGATGTATTTTATCTTTTACGGGCCTTG
CCTTGGTTCGTGCAATCGATAGTCCAGCACTGTCTCCGTCGGGGCGTGCT
CAATGGCATTCGGAACGACTTCGTGCGACATGGGACGGAGGTAGAGAATA
GAGCGGTGGCTCATGCGCGGGCCATGCATGAGCGGAATCCGCATGCTTTT
CCTGCCATTTTCCGGAGTATTTTGGCTTTTCCCTTTGCGGGGCTGGAGAA
TACGATTCGGAGATTGTCCGGTGCGAGGTTACCTACGTTGTTGGTATGGG
CGGAGTATGATAGGGTGTTGCCGTTTGAACCGCAGTTTGGCCGATGGAAG
GCCTTGTTGAAAACGGGGCAGAACGTGAGGTATGAGGTGGTGAAGGAGGC
CGGACACGGCTTTTTACTGGAGAAGCCTGAAGTAGTAGGGGAGATGGTAG
TGGGATTTTTGAAATCTCTCCCTACTTGGGTGCCGGAGGCGTTGATAAAT
CATTTGAAAAGTCATCCTTCCACGATCACCATTTGAGCGAGGAAGAAATG
AGAGGGAGGCGACGTATGTGTATAAGTGTGTGGGAGCGGTAATAAGGTGT
TTTATTTTTGATTGAATATTTAAGAGGGTGAGACGGAAATGCAATTTCCA
AAGTCGTCTTCTTGCTGGGTGCCGGTGGCGGTGAGTAATCGTCCGCCCTC
CATCACATATCAACCGAAGGAGGGGTAAAAGGAGGATAGATCCGTAGGGC
TAATTGGTGGCAGAAGGAGATGAGATGGTTGCTGTTTTCAACAATGGCAG
TAGGAAATAAATAGCAGCTAGGGAAGGAGGATGTATGATGCTCGTGATAA
GCTACTTATTTCTGTTTTATGTGCATTTTATATTTTGCCATAAGAGACCC
TTGTCATATAGAATTTTACAGGCCCGACAAATTTCTCTGGAGAATGTGTG
GCCTAGGGATGCACCCACCCACTCGTAAACACAGTGCGAACTCAAAAGAT
CAAAAGCAATAAATGAGCAGCGAAAC
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protein sequence of jgi.p|Nanoce1779_2|593627

>mRNA_6060-protein ID=mRNA_6060-protein|Name=jgi.p|Nanoce1779_2|593627|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MAPQQKANFSCTSASTSIEDMGTSTNKLTPFSKAPTAASTTHAYTASRAA
VAAAALSPPLPADEEDGQKGEILAGTHFILEGPASGKLVVCVPGLGGPHW
YFDEVAPFLLQAGFRVLRYDLVGRGHSKPPSRTRRPSCFCNGVAREKDPY
GMVGHVAQLRRLLVNLDLVAKNNGDDRISSSACPQPDCDDTDLSEIDDEI
LSPLPMSAIHLIGHSMGGAIAVGYADCYPEDVASLTLLTPAGLMDKDVFY
LLRALPWFVQSIVQHCLRRGVLNGIRNDFVRHGTEVENRAVAHARAMHER
NPHAFPAIFRSILAFPFAGLENTIRRLSGARLPTLLVWAEYDRVLPFEPQ
FGRWKALLKTGQNVRYEVVKEAGHGFLLEKPEVVGEMVVGFLKSLPTWVP
EALINHLKSHPSTITI*
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mRNA from alignment at scaffold_14:432252..434254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6060 ID=mRNA_6060|Name=jgi.p|Nanoce1779_2|593627|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at scaffold_14:432252..434254- (Nannochloropsis oceanica)
ACAGGCTTTGCGAAGGGCGGGAGTCGGAAGACGTTTACCCGACGCCTCCC
TGTGCTCGTCGCAGTCGATCGATCATCCAGTCCCAGACATCAGAGTACGG
CCCACACGCTCCACACAACCGCTGCCTCAGCCTCCATGGCGCCCCAACAA
AAAGCCAATTTTTCCTGCACTAGCGCTTCCACTTCCATTGAGGACATGGG
TACCAGCACTAATAAACTAACGCCCTTCTCCAAGGCTCCAACGGCCGCCT
CGACCACGCATGCATACACAGCGAGCAGAGCAGCGGTTGCCGCTGCGGCA
CTCTCCCCACCCTTGCCAGCGGATGAAGAAGATGGGCAGAAAGGCGAAAT
ACTGGCTGGCACTCACTTCATCCTGGAAGGCCCCGCCTCCGGGAAGCTGG
TTGTGTGTGTCCCGGGTTTGGGTGGGCCTCACTGGTACTTTGACGAGGTT
GCCCCCTTCTTGCTTCAAGCAGGTTTCAGGGTTTTGCGGTACGACTTGGT
GGGCCGTGGGCATTCGAAGCCACCATCACGCACTCGTCGGCCGTCGTGCT
TTTGTAATGGCGTGGCCCGGGAGAAAGATCCATATGGTAGGTTCAGTTGT
CGCCTCCGTTGAGGAGAAGAGATTGTTTGCTGCGGGTATTTATTTTAACG
ATTTCCTTCCTTTTTCTGCATCGTTTCCTCTTCTCCACCCTACTCCCACC
AATTTTAATCCAGGCATGGTTGGTCATGTCGCCCAACTTCGTCGCCTACT
GGTAAACCTCGATCTCGTTGCCAAAAACAACGGCGACGATCGAATTTCTT
CCTCAGCCTGCCCCCAGCCTGACTGTGATGATACCGACCTGAGCGAGATC
GACGATGAAATTCTCTCCCCCTTGCCCATGTCTGCGATTCACTTGATCGG
CCATAGCATGGGAGGGGCCATTGCCGTTGGGTACGCCGATTGCTATCCTG
AAGATGTGGCCTCCCTCACCTTGCTCACTCCCGCCGGCTTGATGGACAAA
GATGTATTTTATCTTTTACGGGCCTTGCCTTGGTTCGTGCAATCGATAGT
CCAGCACTGTCTCCGTCGGGGCGTGCTCAATGGCATTCGGAACGACTTCG
TGCGACATGGGACGGAGGTAGAGAATAGAGCGGTGGCTCATGCGCGGGCC
ATGCATGAGCGGAATCCGCATGCTTTTCCTGCCATTTTCCGGAGTATTTT
GGCTTTTCCCTTTGCGGGGCTGGAGAATACGATTCGGAGATTGTCCGGTG
CGAGGTTACCTACGTTGTTGGTATGGGCGGAGTATGATAGGGTGTTGCCG
TTTGAACCGCAGTTTGGCCGATGGAAGGCCTTGTTGAAAACGGGGCAGAA
CGTGAGGTATGAGGTGGTGAAGGAGGCCGGACACGGCTTTTTACTGGAGA
AGCCTGAAGTAGTAGGGGAGATGGTAGTGGGATTTTTGAAATCTCTCCCT
ACTTGGGTGCCGGAGGCGTTGATAAATCATTTGAAAAGTCATCCTTCCAC
GATCACCATTTGAGCGAGGAAGAAATGAGAGGGAGGCGACGTATGTGTAT
AAGTGTGTGGGAGCGGTAATAAGGTGTTTTATTTTTGATTGAATATTTAA
GAGGGTGAGACGGAAATGCAATTTCCAAAGTCGTCTTCTTGCTGGGTGCC
GGTGGCGGTGAGTAATCGTCCGCCCTCCATCACATATCAACCGAAGGAGG
GGTAAAAGGAGGATAGATCCGTAGGGCTAATTGGTGGCAGAAGGAGATGA
GATGGTTGCTGTTTTCAACAATGGCAGTAGGAAATAAATAGCAGCTAGGG
AAGGAGGATGTATGATGCTCGTGATAAGCTACTTATTTCTGTTTTATGTG
CATTTTATATTTTGCCATAAGAGACCCTTGTCATATAGAATTTTACAGGC
CCGACAAATTTCTCTGGAGAATGTGTGGCCTAGGGATGCACCCACCCACT
CGTAAACACAGTGCGAACTCAAAAGATCAAAAGCAATAAATGAGCAGCGA
AAC
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Coding sequence (CDS) from alignment at scaffold_14:432252..434254-

>mRNA_6060 ID=mRNA_6060|Name=jgi.p|Nanoce1779_2|593627|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_14:432252..434254- (Nannochloropsis oceanica)
GCATGGTTGGTCATGTCGCCCAACTTCGTCGCCTACTGGTAAACCTCGAT
CTCGTTGCCAAAAACAACGGCGACGATCGAATTTCTTCCTCAGCCTGCCC
CCAGCCTGACTGTGATGATACCGACCTGAGCGAGATCGACGATGAAATTC
TCTCCCCCTTGCCCATGTCTGCGATTCACTTGATCGGCCATAGCATGGGA
GGGGCCATTGCCGTTGGGTACGCCGATTGCTATCCTGAAGATGTGGCCTC
CCTCACCTTGCTCACTCCCGCCGGCTTGATGGACAAAGATGTATTTTATC
TTTTACGGGCCTTGCCTTGGTTCGTGCAATCGATAGTCCAGCACTGTCTC
CGTCGGGGCGTGCTCAATGGCATTCGGAACGACTTCGTGCGACATGGGAC
GGAGGTAGAGAATAGAGCGGTGGCTCATGCGCGGGCCATGCATGAGCGGA
ATCCGCATGCTTTTCCTGCCATTTTCCGGAGTATTTTGGCTTTTCCCTTT
GCGGGGCTGGAGAATACGATTCGGAGATTGTCCGGTGCGAGGTTACCTAC
GTTGTTGGTATGGGCGGAGTATGATAGGGTGTTGCCGTTTGAACCGCAGT
TTGGCCGATGGAAGGCCTTGTTGAAAACGGGGCAGAACGTGAGGTATGAG
GTGGTGAAGGAGGCCGGACACGGCTTTTTACTGGAGAAGCCTGAAGTAGT
AGGGGAGATGGTAGTGGGATTTTTGAAATCTCTCCCTACTTGGGTGCCGG
AGGCGTTGATAAATCATTTGAAAAGTCATCCTTCCACGATCACCATTTGA
ATGGCGCCCCAACAAAAAGCCAATTTTTCCTGCACTAGCGCTTCCACTTC
CATTGAGGACATGGGTACCAGCACTAATAAACTAACGCCCTTCTCCAAGG
CTCCAACGGCCGCCTCGACCACGCATGCATACACAGCGAGCAGAGCAGCG
GTTGCCGCTGCGGCACTCTCCCCACCCTTGCCAGCGGATGAAGAAGATGG
GCAGAAAGGCGAAATACTGGCTGGCACTCACTTCATCCTGGAAGGCCCCG
CCTCCGGGAAGCTGGTTGTGTGTGTCCCGGGTTTGGGTGGGCCTCACTGG
TACTTTGACGAGGTTGCCCCCTTCTTGCTTCAAGCAGGTTTCAGGGTTTT
GCGGTACGACTTGGTGGGCCGTGGGCATTCGAAGCCACCATCACGCACTC
GTCGGCCGTCGTGCTTTTGTAATGGCGTGGCCCGGGAGAAAGATCCATAT
GGCATGGTTGGTCATGTCGCCCAACTTCGTCGCCTACTGGTAAACCTCGA
TCTCGTTGCCAAAAACAACGGCGACGATCGAATTTCTTCCTCAGCCTGCC
CCCAGCCTGACTGTGATGATACCGACCTGAGCGAGATCGACGATGAAATT
CTCTCCCCCTTGCCCATGTCTGCGATTCACTTGATCGGCCATAGCATGGG
AGGGGCCATTGCCGTTGGGTACGCCGATTGCTATCCTGAAGATGTGGCCT
CCCTCACCTTGCTCACTCCCGCCGGCTTGATGGACAAAGATGTATTTTAT
CTTTTACGGGCCTTGCCTTGGTTCGTGCAATCGATAGTCCAGCACTGTCT
CCGTCGGGGCGTGCTCAATGGCATTCGGAACGACTTCGTGCGACATGGGA
CGGAGGTAGAGAATAGAGCGGTGGCTCATGCGCGGGCCATGCATGAGCGG
AATCCGCATGCTTTTCCTGCCATTTTCCGGAGTATTTTGGCTTTTCCCTT
TGCGGGGCTGGAGAATACGATTCGGAGATTGTCCGGTGCGAGGTTACCTA
CGTTGTTGGTATGGGCGGAGTATGATAGGGTGTTGCCGTTTGAACCGCAG
TTTGGCCGATGGAAGGCCTTGTTGAAAACGGGGCAGAACGTGAGGTATGA
GGTGGTGAAGGAGGCCGGACACGGCTTTTTACTGGAGAAGCCTGAAGTAG
TAGGGGAGATGGTAGTGGGATTTTTGAAATCTCTCCCTACTTGGGTGCCG
GAGGCGTTGATAAATCATTTGAAAAGTCATCCTTCCACGATCACCATTTG
AATGGCGCCCCAACAAAAAGCCAATTTTTCCTGCACTAGCGCTTCCACTT
CCATTGAGGACATGGGTACCAGCACTAATAAACTAACGCCCTTCTCCAAG
GCTCCAACGGCCGCCTCGACCACGCATGCATACACAGCGAGCAGAGCAGC
GGTTGCCGCTGCGGCACTCTCCCCACCCTTGCCAGCGGATGAAGAAGATG
GGCAGAAAGGCGAAATACTGGCTGGCACTCACTTCATCCTGGAAGGCCCC
GCCTCCGGGAAGCTGGTTGTGTGTGTCCCGGGTTTGGGTGGGCCTCACTG
GTACTTTGACGAGGTTGCCCCCTTCTTGCTTCAAGCAGGTTTCAGGGTTT
TGCGGTACGACTTGGTGGGCCGTGGGCATTCGAAGCCACCATCACGCACT
CGTCGGCCGTCGTGCTTTTGTAATGGCGTGGCCCGGGAGAAAGATCCATA
TG
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Synonyms
Publications