jgi.p|Nanoce1779_2|577916, mRNA_606 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577916
Unique Name	mRNA_606
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2563
Alignment location	scaffold_3:1514790..1517352 -

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Properties


Property Name	Value
TranscriptId	578002
Track	FilteredModels2
ProteinId	577916

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1514790..1517352 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577916	gene_606	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577916	mRNA_606-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_606	CDS_606	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1514790..1517352-
coding sequence from alignment at scaffold_3:1514790..1517352-

mRNA sequence

>mRNA_606 ID=mRNA_606|Name=jgi.p|Nanoce1779_2|577916|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp
CTCATGCAGGTTGCCTTGAATGGGCGTCGCGGTGGGCGTAGCATGACCTG
ACTTTTTTCTTTTGACTGCATATCCTGAGAGGGCTCTCTATGGCACGTGC
CGAAGTAGGCCGACACTTTACTGTGCTGAGCATCACACCCCCACAGACAG
GGCGCTCATATCTTGTGCCCTGGGCCATTTCGTGGCGTATGTGGCTCTTG
CACATTTATTTCTGTCCTCGATGTAGATGGACATGACTTACAATTGCATT
GCGAAGATGGATGGAAGAAGAAAGAAGATCGCGCGCCGCCCTCGTCTCAA
CCTCCCCCTCATGCCTTTGGGCTGTTCGTGCATTTCCCTCCCCTCTCTTT
CTCTCCCTGACCCGCTCTGAACCAAGACTCTCTACTCATAGATCTGGAAT
CTTACGAAGGGTTTGATAGTGGTGCAGCTCAACATGAGAACGAGGTCTCT
CCCAATCAGGAACCATTTCGTGCCTCTCCCCCTTCGGCACGAAGTTCCGT
TGCGCAGAGCGAGAGCGACAGCAGGCAGCATGCCTGCCATGTCAAGCTGC
ACTTTGACACCCCCCAACTACTCACCACGGGACACATTACGCACACTAGG
AAGATTCCAGTGTGAAGAAACGACCATGAATCCTCCCTCATTATACTTAC
CATGATGCAAATTTAGAGGAGATGCCTGGGACCTATTTGCTCCATAGTGT
TCACTAATTTATCGTGGACTTCAGAAGCCGCGGCTCACCGAAACGATGAG
CCGCCATGACTGTCCACGAGGTGGTGTCACCCATGTGCGGTACTAGTTAC
CACACGAGCCTCACAATGAACGAACGACACAATCACAGACACAGATACAA
ACAAAGGCACAGACACAGACACAGATATATACTCAGATAGAGATACACAC
AGATGCAGACAATGGCATGGGCACACACAAGCATAAACCTACACACTAAC
ACTCAAACACAAACACACACACACTCACTGCACGCGGGCTTTCGTTCACC
ATCTCAATTCTACAGTGCAATTGAGGGCAAATTGGTAAGCCGCTGCCACC
TGCCAGTATTCAACAAGAAAGGAGACCCGAAGCCGCTGTTTTCGCAGGCC
ATACCGCCTTTGTGTCGGCCTTACAGATCGCGTTGCGATGGACAAGCATC
CCCCGGAAAGGCCTGCTCCGCCGGAGGTCGCGGCATGCCAGCTTGCTTCG
GCGGAACACACCATCGGCAATGCGCCCTCCTCTCCTCCTGCCATACATCA
CGACTACGTTCCCGGCTCGAAGGACCTGCGTGGCCCCCCTGCGCCGTTAG
TGTTTATGCTGCGCCTCGCTGCACTGCTTTTGTGCGTGGACACCCTGCTC
ATCATTTCCTCTTCCTCTCCGGGCACTGTGTTTCTCCTTCGTGGCCTGAA
CTGCGTCATTGGCGCCGTCCTCTGCTTCCGTGCCGCCACGCGGCTCGAGA
CCTCCCACCAGGCCCTGGAATCACAGCAGCAAGAAGAAGAGGCCAAGGCC
CTGGCTGCCATGCTTGCGGCACCGAAGTCTTTATCATTCAGCATCTCGCC
CACTCGGTCTCGCACACGTCCTTTTCTGTTTGCGATGATGGAGGGGCAAG
ACCGTGCGGGATCCCCCCCCGGGGCAGGCCGACACCACGGTAACAGTAGC
CCCTCTCCTCCTCGATGCCACGGTCCGTCTGCCAGCCTGGGGAATGTAGG
AGATCTCGAGGGAAAGAAGGGGACAGAAGGGAAAGAGGATAGGCGGGAGG
AGGTGGAGGAGGAAGCCTTGGACTCTGACATGGACTGTGGCGGGAGCGGC
GCGTGGGGCCAATTCAACAGCGGCGAAGAAGGCGGGAGAGATCAGCAGGC
TGGCAGTTTTGGCGATGCCGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTC
CTACTGCTGGAACTGATGCTGGTGCTGGTGCTGGTGCTGATGCGGGTACT
GAAACTCTTGCTACCAGTGTGAATTGTAACAAGAAGCTGACGCTCCTCCT
CTGCCTCTCCGCCGTCCTCCTTCTCGTGGACGCGGGGTGGATCTTCTGGG
TGGCGTCCACTAACACAACCACCACCTACCCACGCACCGATCCTTCCTTT
CCTCCCGCCGGTGGCTCTACTACGGCCCCTCCCTCGGGTTCTAGCTCCCT
TCGACAGCACCCACGGCAAAGCAGCAGCCCTAACGGTCGGAACAGCAGCA
ACGTGGTGTACGGGGCCCTATTGTATGTAATTGGCCTGCTTTGCGTGTTT
GCCAGCTGTGCGTCTGCAAGCGCGGCAAGGCGATTGTGGACGTACGGGTC
GCTGCTGATGGAAGGGGAGAGAATGAGGGAATCAGACGACGAAGAGGGGG
AGGAAGTGTTGGAGAGAGCAAGGGAGCGAGAGGCAGCCTTGATGCCGCGG
TCTGCGTCAAAATGCGTCTCATTCGAGGGGATAGGGATCCTGGGACAGGG
CGAGCAGAAGGAGATGGAACAGAAGGAGGAGGAGGAGGAGGAGGAAGAAG
AAGAAGAAATAGTAGGCGCGATGGTGAATGCGGCTGAGGAAGGGGAGGAG
GAGGGGAAGGAGG

protein sequence of jgi.p|Nanoce1779_2|577916

>mRNA_606-protein ID=mRNA_606-protein|Name=jgi.p|Nanoce1779_2|577916|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MQTMAWAHTSINLHTNTQTQTHTHSLHAGFRSPSQFYSAIEGKLVSRCHL
PVFNKKGDPKPLFSQAIPPLCRPYRSRCDGQASPGKACSAGGRGMPACFG
GTHHRQCALLSSCHTSRLRSRLEGPAWPPCAVSVYAAPRCTAFVRGHPAH
HFLFLSGHCVSPSWPELRHWRRPLLPCRHAARDLPPGPGITAARRRGQGP
GCHACGTEVFIIQHLAHSVSHTSFSVCDDGGARPCGIPPRGRPTPR*

mRNA from alignment at scaffold_3:1514790..1517352-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_606 ID=mRNA_606|Name=jgi.p|Nanoce1779_2|577916|organism=Nannochloropsis oceanica|type=mRNA|length=2563bp|location=Sequence derived from alignment at scaffold_3:1514790..1517352- (Nannochloropsis oceanica)
CTCATGCAGGTTGCCTTGAATGGGCGTCGCGGTGGGCGTAGCATGACCTG
ACTTTTTTCTTTTGACTGCATATCCTGAGAGGGCTCTCTATGGCACGTGC
CGAAGTAGGCCGACACTTTACTGTGCTGAGCATCACACCCCCACAGACAG
GGCGCTCATATCTTGTGCCCTGGGCCATTTCGTGGCGTATGTGGCTCTTG
CACATTTATTTCTGTCCTCGATGTAGATGGACATGACTTACAATTGCATT
GCGAAGATGGATGGAAGAAGAAAGAAGATCGCGCGCCGCCCTCGTCTCAA
CCTCCCCCTCATGCCTTTGGGCTGTTCGTGCATTTCCCTCCCCTCTCTTT
CTCTCCCTGACCCGCTCTGAACCAAGACTCTCTACTCATAGATCTGGAAT
CTTACGAAGGGTTTGATAGTGGTGCAGCTCAACATGAGAACGAGGTCTCT
CCCAATCAGGAACCATTTCGTGCCTCTCCCCCTTCGGCACGAAGTTCCGT
TGCGCAGAGCGAGAGCGACAGCAGGCAGCATGCCTGCCATGTCAAGCTGC
ACTTTGACACCCCCCAACTACTCACCACGGGACACATTACGCACACTAGG
AAGATTCCAGTGTGAAGAAACGACCATGAATCCTCCCTCATTATACTTAC
CATGATGCAAATTTAGAGGAGATGCCTGGGACCTATTTGCTCCATAGTGT
TCACTAATTTATCGTGGACTTCAGAAGCCGCGGCTCACCGAAACGATGAG
CCGCCATGACTGTCCACGAGGTGGTGTCACCCATGTGCGGTACTAGTTAC
CACACGAGCCTCACAATGAACGAACGACACAATCACAGACACAGATACAA
ACAAAGGCACAGACACAGACACAGATATATACTCAGATAGAGATACACAC
AGATGCAGACAATGGCATGGGCACACACAAGCATAAACCTACACACTAAC
ACTCAAACACAAACACACACACACTCACTGCACGCGGGCTTTCGTTCACC
ATCTCAATTCTACAGTGCAATTGAGGGCAAATTGGTAAGCCGCTGCCACC
TGCCAGTATTCAACAAGAAAGGAGACCCGAAGCCGCTGTTTTCGCAGGCC
ATACCGCCTTTGTGTCGGCCTTACAGATCGCGTTGCGATGGACAAGCATC
CCCCGGAAAGGCCTGCTCCGCCGGAGGTCGCGGCATGCCAGCTTGCTTCG
GCGGAACACACCATCGGCAATGCGCCCTCCTCTCCTCCTGCCATACATCA
CGACTACGTTCCCGGCTCGAAGGACCTGCGTGGCCCCCCTGCGCCGTTAG
TGTTTATGCTGCGCCTCGCTGCACTGCTTTTGTGCGTGGACACCCTGCTC
ATCATTTCCTCTTCCTCTCCGGGCACTGTGTTTCTCCTTCGTGGCCTGAA
CTGCGTCATTGGCGCCGTCCTCTGCTTCCGTGCCGCCACGCGGCTCGAGA
CCTCCCACCAGGCCCTGGAATCACAGCAGCAAGAAGAAGAGGCCAAGGCC
CTGGCTGCCATGCTTGCGGCACCGAAGTCTTTATCATTCAGCATCTCGCC
CACTCGGTCTCGCACACGTCCTTTTCTGTTTGCGATGATGGAGGGGCAAG
ACCGTGCGGGATCCCCCCCCGGGGCAGGCCGACACCACGGTAACAGTAGC
CCCTCTCCTCCTCGATGCCACGGTCCGTCTGCCAGCCTGGGGAATGTAGG
AGATCTCGAGGGAAAGAAGGGGACAGAAGGGAAAGAGGATAGGCGGGAGG
AGGTGGAGGAGGAAGCCTTGGACTCTGACATGGACTGTGGCGGGAGCGGC
GCGTGGGGCCAATTCAACAGCGGCGAAGAAGGCGGGAGAGATCAGCAGGC
TGGCAGTTTTGGCGATGCCGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTC
CTACTGCTGGAACTGATGCTGGTGCTGGTGCTGGTGCTGATGCGGGTACT
GAAACTCTTGCTACCAGTGTGAATTGTAACAAGAAGCTGACGCTCCTCCT
CTGCCTCTCCGCCGTCCTCCTTCTCGTGGACGCGGGGTGGATCTTCTGGG
TGGCGTCCACTAACACAACCACCACCTACCCACGCACCGATCCTTCCTTT
CCTCCCGCCGGTGGCTCTACTACGGCCCCTCCCTCGGGTTCTAGCTCCCT
TCGACAGCACCCACGGCAAAGCAGCAGCCCTAACGGTCGGAACAGCAGCA
ACGTGGTGTACGGGGCCCTATTGTATGTAATTGGCCTGCTTTGCGTGTTT
GCCAGCTGTGCGTCTGCAAGCGCGGCAAGGCGATTGTGGACGTACGGGTC
GCTGCTGATGGAAGGGGAGAGAATGAGGGAATCAGACGACGAAGAGGGGG
AGGAAGTGTTGGAGAGAGCAAGGGAGCGAGAGGCAGCCTTGATGCCGCGG
TCTGCGTCAAAATGCGTCTCATTCGAGGGGATAGGGATCCTGGGACAGGG
CGAGCAGAAGGAGATGGAACAGAAGGAGGAGGAGGAGGAGGAGGAAGAAG
AAGAAGAAATAGTAGGCGCGATGGTGAATGCGGCTGAGGAAGGGGAGGAG
GAGGGGAAGGAGG

Coding sequence (CDS) from alignment at scaffold_3:1514790..1517352-

>mRNA_606 ID=mRNA_606|Name=jgi.p|Nanoce1779_2|577916|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_3:1514790..1517352- (Nannochloropsis oceanica)
ATGCAGACAATGGCATGGGCACACACAAGCATAAACCTACACACTAACAC
TCAAACACAAACACACACACACTCACTGCACGCGGGCTTTCGTTCACCAT
CTCAATTCTACAGTGCAATTGAGGGCAAATTGGTAAGCCGCTGCCACCTG
CCAGTATTCAACAAGAAAGGAGACCCGAAGCCGCTGTTTTCGCAGGCCAT
ACCGCCTTTGTGTCGGCCTTACAGATCGCGTTGCGATGGACAAGCATCCC
CCGGAAAGGCCTGCTCCGCCGGAGGTCGCGGCATGCCAGCTTGCTTCGGC
GGAACACACCATCGGCAATGCGCCCTCCTCTCCTCCTGCCATACATCACG
ACTACGTTCCCGGCTCGAAGGACCTGCGTGGCCCCCCTGCGCCGTTAGTG
TTTATGCTGCGCCTCGCTGCACTGCTTTTGTGCGTGGACACCCTGCTCAT
CATTTCCTCTTCCTCTCCGGGCACTGTGTTTCTCCTTCGTGGCCTGAACT
GCGTCATTGGCGCCGTCCTCTGCTTCCGTGCCGCCACGCGGCTCGAGACC
TCCCACCAGGCCCTGGAATCACAGCAGCAAGAAGAAGAGGCCAAGGCCCT
GGCTGCCATGCTTGCGGCACCGAAGTCTTTATCATTCAGCATCTCGCCCA
CTCGGTCTCGCACACGTCCTTTTCTGTTTGCGATGATGGAGGGGCAAGAC
CGTGCGGGATCCCCCCCCGGGGCAGGCCGACACCACGGTAA

Synonyms

Publications