jgi.p|Nanoce1779_2|593624, mRNA_6059 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593624
Unique NamemRNA_6059
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1309
Alignment locationscaffold_14:430942..432250 +

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Properties
Property NameValue
TranscriptId593710
TrackFilteredModels2
ProteinId593624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:430942..432250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593624gene_6059Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593624mRNA_6059-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6059CDS_6059Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6059 ID=mRNA_6059|Name=jgi.p|Nanoce1779_2|593624|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp
CAACAGACCCAAACAAAAATCCAACTTAAAATAAACACGCCACAATACAG
ACACAAGGATAAAGACGAACGACCTCTACCATCAAGACCTGTAGCACATT
GGCGTCTTCTCCGCTTGATGGCTTCCTCCTTCCAGTGTCGTTACCGCCGA
CCCCTTCCCCTTCTCCTCTTCCTCGTCCTGACTCTCCTTCTGGCCATTCT
CCCTAGCAATGCCTTTTTCAGCTTCTCTGTGTGTCGTCCGCACCTCCACA
AGCCACTGTTAGCGATTGATACGATATGGAGTCCACCCTCATCCCCGCTG
TCCTCGCCAAGGCCCACTCAAAATCTAAGTGCGGCCTTGCCTGACTTGCT
AGGCAGCCGCACACTGGGGTTGGACTGGGGTAGTAAAAAGATTGGCGTCG
CTCTTACCGCAGGCTTCAGCCAACGCCCTCTTGGCACTATCAACAACCCA
GCAGGATGTAGTTTGAATGCTTCTCGACATCGCCCGACGATTGATTATCT
TTTGGGCATCCTGAAAGCGGAGGGCGCAGTAAGGGTAGTGGTAGGCCACC
CTCTATTCCGCGACGGAACGCTCAGCCCGCAAGCCAACGCCACGAAGATC
TTCGCCCGTTTGATCGCAGATCGTGCGCTGCAGTTGGAAATTGTGGCTTC
CGCGGATGTGCCCTTTGTGTATCTGTGGGACGAACGTTTGACTTCGCAGG
CTGCCAAGGTTAATATCAAGACTAAGTCTTTCTTGCACAGCTCTAATGAT
ATTGACTCTCAAGCAGCATGTTTGGTACTTGAAGATTTCTACCAACAAAA
AGGATACAAGGCCGAAATTGTGTGGCCTGATGCTGCTGCGGTGGCGGAAG
CAGCAACAGCCATGGCAGGAGCAACGCTGGCCTCGGCAAGCGAAGGAAAC
AAAAACTCAAATGCCGCTGCTCCTACTGCCACGGCTTCTCCTCCACCGCG
AGCCAGTATGACATACGATGAGTGGCGCCGGGTAGAGTCGGAACGCTACG
GTCGTGGCACGTCGGCTGCCTTGCCCGGTGCAGGCAACACAGCTGGAGAT
GGTGGTGGCGATGATGCGGGTTCCACGAAGAAAAAGAAGAAAAAGAAAAA
GAAAAACAAGTAGGCTTTTGAATTTTAAAAAACATAAAGGACATCAGGAA
ATGATTCTTTTATTTTTGTACCCATCAAAGCACAAATTACCCAATAATCA
TGTGAAGAGGCCCTATATGAGGCTGGGCCCAAAAAGAGGTAACAAAAACA
AACTTGTAAAGTAGATCAATAAAGCATAATCATCACGCCGCGAGCGTCTA
GAAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|593624

>mRNA_6059-protein ID=mRNA_6059-protein|Name=jgi.p|Nanoce1779_2|593624|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MASSFQCRYRRPLPLLLFLVLTLLLAILPSNAFFSFSVCRPHLHKPLLAI
DTIWSPPSSPLSSPRPTQNLSAALPDLLGSRTLGLDWGSKKIGVALTAGF
SQRPLGTINNPAGCSLNASRHRPTIDYLLGILKAEGAVRVVVGHPLFRDG
TLSPQANATKIFARLIADRALQLEIVASADVPFVYLWDERLTSQAAKVNI
KTKSFLHSSNDIDSQAACLVLEDFYQQKGYKAEIVWPDAAAVAEAATAMA
GATLASASEGNKNSNAAAPTATASPPPRASMTYDEWRRVESERYGRGTSA
ALPGAGNTAGDGGGDDAGSTKKKKKKKKKNK*
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mRNA from alignment at scaffold_14:430942..432250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6059 ID=mRNA_6059|Name=jgi.p|Nanoce1779_2|593624|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp|location=Sequence derived from alignment at scaffold_14:430942..432250+ (Nannochloropsis oceanica)
CAACAGACCCAAACAAAAATCCAACTTAAAATAAACACGCCACAATACAG
ACACAAGGATAAAGACGAACGACCTCTACCATCAAGACCTGTAGCACATT
GGCGTCTTCTCCGCTTGATGGCTTCCTCCTTCCAGTGTCGTTACCGCCGA
CCCCTTCCCCTTCTCCTCTTCCTCGTCCTGACTCTCCTTCTGGCCATTCT
CCCTAGCAATGCCTTTTTCAGCTTCTCTGTGTGTCGTCCGCACCTCCACA
AGCCACTGTTAGCGATTGATACGATATGGAGTCCACCCTCATCCCCGCTG
TCCTCGCCAAGGCCCACTCAAAATCTAAGTGCGGCCTTGCCTGACTTGCT
AGGCAGCCGCACACTGGGGTTGGACTGGGGTAGTAAAAAGATTGGCGTCG
CTCTTACCGCAGGCTTCAGCCAACGCCCTCTTGGCACTATCAACAACCCA
GCAGGATGTAGTTTGAATGCTTCTCGACATCGCCCGACGATTGATTATCT
TTTGGGCATCCTGAAAGCGGAGGGCGCAGTAAGGGTAGTGGTAGGCCACC
CTCTATTCCGCGACGGAACGCTCAGCCCGCAAGCCAACGCCACGAAGATC
TTCGCCCGTTTGATCGCAGATCGTGCGCTGCAGTTGGAAATTGTGGCTTC
CGCGGATGTGCCCTTTGTGTATCTGTGGGACGAACGTTTGACTTCGCAGG
CTGCCAAGGTTAATATCAAGACTAAGTCTTTCTTGCACAGCTCTAATGAT
ATTGACTCTCAAGCAGCATGTTTGGTACTTGAAGATTTCTACCAACAAAA
AGGATACAAGGCCGAAATTGTGTGGCCTGATGCTGCTGCGGTGGCGGAAG
CAGCAACAGCCATGGCAGGAGCAACGCTGGCCTCGGCAAGCGAAGGAAAC
AAAAACTCAAATGCCGCTGCTCCTACTGCCACGGCTTCTCCTCCACCGCG
AGCCAGTATGACATACGATGAGTGGCGCCGGGTAGAGTCGGAACGCTACG
GTCGTGGCACGTCGGCTGCCTTGCCCGGTGCAGGCAACACAGCTGGAGAT
GGTGGTGGCGATGATGCGGGTTCCACGAAGAAAAAGAAGAAAAAGAAAAA
GAAAAACAAGTAGGCTTTTGAATTTTAAAAAACATAAAGGACATCAGGAA
ATGATTCTTTTATTTTTGTACCCATCAAAGCACAAATTACCCAATAATCA
TGTGAAGAGGCCCTATATGAGGCTGGGCCCAAAAAGAGGTAACAAAAACA
AACTTGTAAAGTAGATCAATAAAGCATAATCATCACGCCGCGAGCGTCTA
GAAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_14:430942..432250+

>mRNA_6059 ID=mRNA_6059|Name=jgi.p|Nanoce1779_2|593624|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_14:430942..432250+ (Nannochloropsis oceanica)
ATGGCTTCCTCCTTCCAGTGTCGTTACCGCCGACCCCTTCCCCTTCTCCT
CTTCCTCGTCCTGACTCTCCTTCTGGCCATTCTCCCTAGCAATGCCTTTT
TCAGCTTCTCTGTGTGTCGTCCGCACCTCCACAAGCCACTGTTAGCGATT
GATACGATATGGAGTCCACCCTCATCCCCGCTGTCCTCGCCAAGGCCCAC
TCAAAATCTAAGTGCGGCCTTGCCTGACTTGCTAGGCAGCCGCACACTGG
GGTTGGACTGGGGTAGTAAAAAGATTGGCGTCGCTCTTACCGCAGGCTTC
AGCCAACGCCCTCTTGGCACTATCAACAACCCAGCAGGATGTAGTTTGAA
TGCTTCTCGACATCGCCCGACGATTGATTATCTTTTGGGCATCCTGAAAG
CGGAGGGCGCAGTAAGGGTAGTGGTAGGCCACCCTCTATTCCGCGACGGA
ACGCTCAGCCCGCAAGCCAACGCCACGAAGATCTTCGCCCGTTTGATCGC
AGATCGTGCGCTGCAGTTGGAAATTGTGGCTTCCGCGGATGTGCCCTTTG
TGTATCTGTGGGACGAACGTTTGACTTCGCAGGCTGCCAAGGTTAATATC
AAGACTAAGTCTTTCTTGCACAGCTCTAATGATATTGACTCTCAAGCAGC
ATGTTTGGTACTTGAAGATTTCTACCAACAAAAAGGATACAAGGCCGAAA
TTGTGTGGCCTGATGCTGCTGCGGTGGCGGAAGCAGCAACAGCCATGGCA
GGAGCAACGCTGGCCTCGGCAAGCGAAGGAAACAAAAACTCAAATGCCGC
TGCTCCTACTGCCACGGCTTCTCCTCCACCGCGAGCCAGTATGACATACG
ATGAGTGGCGCCGGGTAGAGTCGGAACGCTACGGTCGTGGCACGTCGGCT
GCCTTGCCCGGTGCAGGCAACACAGCTGGAGATGGTGGTGGCGATGATGC
GGGTTCCACGAAGAAAAAGAAGAAAAAGAAAAAGAAAAACAAGTAG
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Synonyms
Publications