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Properties
| Property Name | Value |
|---|
| TranscriptId | 593709 |
| Track | FilteredModels2 |
| ProteinId | 593623 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:429431..430909 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6058 ID=mRNA_6058|Name=jgi.p|Nanoce1779_2|593623|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
AAATATTCAAGAGTGGCTGCTGTACAATATACACATGTTATTAATATTTC
CAAGAGAAGACGGAGTTCTCTTGGGCCAATCCAGAAAATAGCGGTGGGGG
GTGGTCTGCCACACGAAAAAAAAATGTTCTCCTGCAATCAGGTACAGAGG
TACAGGTAAAAAAAACAATTCATAGACAAAGTCCTTTCGGCCATGTTGTA
ACTAAACAAACCACTCACACGCTGCGTATACCTCCACTATATAGGAAATC
ATACTGCGTTCCATAGCCTTGCCTGAGGCTTGCCTCGTCCGGCTCTTCTT
TGCCTGTTTCCTCGTCCTTTGCCTCATCACCATGTCCTCCGGGAGCACAT
CTCCCTCTGCGCTCGGTAAAGTCGTCGTCCTTGGGGCTAAGGGCCGCACT
GGGCGCCTCATCCTTTCTCACTTGAAGACGCTGGGCGCCAAGGAGGTCCT
CGCTGTAGCACGCAACATCACGGGAGAGACGAACGACGACGTGGTCAAGT
GGGAAGCGGGCGACGTCAAGGACGCGAGCCATCTCAGCACAGTCCTCAAA
GGGGCGTCGGCCGTGCTATTCACCGCTTCGGCATCTCAAGGTTGGTCTCT
CTTCGGTACCAATACACCGAAGCAAGTGGACTACGAAGGGTGTGTGCTGA
CAGCCAAGGCGGCTGTGCAGGCGAAGGTGCCCCAGCTCGTCATTGTCAGT
AGCGCTTTCGTGGCGAGGCCTTACCACCCGATTGCCCTCATGCTATCCAC
CTTGTTTGGCCGGGTCATGCAATGGAAGCGCAAAGGTGAGCTCGAAGCCA
TTTCCATCACGCAGCAAGCAGGCTCTGTTACTTCCTATACCATAGTTCGA
CCGGGGGGTCTCTCGGATAAAAAGACGCCTAAGGGATTACAAGGCATTCA
GATCAGCCAGGGCGACACCGTAGGTGGGATGATTACGCGAGATGATACCG
CTCTGGTGACGGCACAAGCCTTGCTATACCCCACCACCAAAAATACTGTG
TTTGAAGTGGTCTGGCACCAGGAGGAGAAGGGGAAGGGGGGGGAAGAGCA
GCAGCCCCCGCCGGTGCGGTACCAAGGTTGGACAGATTTCTTTTCTCGGT
TACGCCCCAATATTGGCGCGCATGATTCTACATTCTACCCCTCAGATCAC
GGGCAGCCCATGAAAGAGATGGGTCAAGGGGAACTGTGAGGGTAGATCAA
GATGGGGATGTTTTGACTCGGGAAAGGGAAAGAGGCCGGAAAACACAGTG
TGCAAAAAAGATCAAATGTAGATGGTGCTTGTGTGTAAGGCGGGGGCCAA
ACACACGAGAAAGATTTTGACAACACTGTGCAGTACAAGTAGAGAGATAG
TGTGAGCGAAGGCATGCACATGCAAGTGTGTGCACTACGTATAACATTCA
AGAGAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAA
AAAGCAGTGTTACAGCACACTATCTCGTC back to topprotein sequence of jgi.p|Nanoce1779_2|593623 >mRNA_6058-protein ID=mRNA_6058-protein|Name=jgi.p|Nanoce1779_2|593623|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MSSGSTSPSALGKVVVLGAKGRTGRLILSHLKTLGAKEVLAVARNITGET
NDDVVKWEAGDVKDASHLSTVLKGASAVLFTASASQGWSLFGTNTPKQVD
YEGCVLTAKAAVQAKVPQLVIVSSAFVARPYHPIALMLSTLFGRVMQWKR
KGELEAISITQQAGSVTSYTIVRPGGLSDKKTPKGLQGIQISQGDTVGGM
ITRDDTALVTAQALLYPTTKNTVFEVVWHQEEKGKGGEEQQPPPVRYQGW
TDFFSRLRPNIGAHDSTFYPSDHGQPMKEMGQGEL* back to topmRNA from alignment at scaffold_14:429431..430909- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6058 ID=mRNA_6058|Name=jgi.p|Nanoce1779_2|593623|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp|location=Sequence derived from alignment at scaffold_14:429431..430909- (Nannochloropsis oceanica)
AAATATTCAAGAGTGGCTGCTGTACAATATACACATGTTATTAATATTTC
CAAGAGAAGACGGAGTTCTCTTGGGCCAATCCAGAAAATAGCGGTGGGGG
GTGGTCTGCCACACGAAAAAAAAATGTTCTCCTGCAATCAGGTACAGAGG
TACAGGTAAAAAAAACAATTCATAGACAAAGTCCTTTCGGCCATGTTGTA
ACTAAACAAACCACTCACACGCTGCGTATACCTCCACTATATAGGAAATC
ATACTGCGTTCCATAGCCTTGCCTGAGGCTTGCCTCGTCCGGCTCTTCTT
TGCCTGTTTCCTCGTCCTTTGCCTCATCACCATGTCCTCCGGGAGCACAT
CTCCCTCTGCGCTCGGTAAAGTCGTCGTCCTTGGGGCTAAGGGCCGCACT
GGGCGCCTCATCCTTTCTCACTTGAAGACGCTGGGCGCCAAGGAGGTCCT
CGCTGTAGCACGCAACATCACGGGAGAGACGAACGACGACGTGGTCAAGT
GGGAAGCGGGCGACGTCAAGGACGCGAGCCATCTCAGCACAGTCCTCAAA
GGGGCGTCGGCCGTGCTATTCACCGCTTCGGCATCTCAAGGTTGGTCTCT
CTTCGGTACCAATACACCGAAGCAAGTGGACTACGAAGGGTGTGTGCTGA
CAGCCAAGGCGGCTGTGCAGGCGAAGGTGCCCCAGCTCGTCATTGTCAGT
AGCGCTTTCGTGGCGAGGCCTTACCACCCGATTGCCCTCATGCTATCCAC
CTTGTTTGGCCGGGTCATGCAATGGAAGCGCAAAGGTGAGCTCGAAGCCA
TTTCCATCACGCAGCAAGCAGGCTCTGTTACTTCCTATACCATAGTTCGA
CCGGGGGGTCTCTCGGATAAAAAGACGCCTAAGGGATTACAAGGCATTCA
GATCAGCCAGGGCGACACCGTAGGTGGGATGATTACGCGAGATGATACCG
CTCTGGTGACGGCACAAGCCTTGCTATACCCCACCACCAAAAATACTGTG
TTTGAAGTGGTCTGGCACCAGGAGGAGAAGGGGAAGGGGGGGGAAGAGCA
GCAGCCCCCGCCGGTGCGGTACCAAGGTTGGACAGATTTCTTTTCTCGGT
TACGCCCCAATATTGGCGCGCATGATTCTACATTCTACCCCTCAGATCAC
GGGCAGCCCATGAAAGAGATGGGTCAAGGGGAACTGTGAGGGTAGATCAA
GATGGGGATGTTTTGACTCGGGAAAGGGAAAGAGGCCGGAAAACACAGTG
TGCAAAAAAGATCAAATGTAGATGGTGCTTGTGTGTAAGGCGGGGGCCAA
ACACACGAGAAAGATTTTGACAACACTGTGCAGTACAAGTAGAGAGATAG
TGTGAGCGAAGGCATGCACATGCAAGTGTGTGCACTACGTATAACATTCA
AGAGAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAA
AAAGCAGTGTTACAGCACACTATCTCGTC back to topCoding sequence (CDS) from alignment at scaffold_14:429431..430909- >mRNA_6058 ID=mRNA_6058|Name=jgi.p|Nanoce1779_2|593623|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_14:429431..430909- (Nannochloropsis oceanica)
ATGTCCTCCGGGAGCACATCTCCCTCTGCGCTCGGTAAAGTCGTCGTCCT
TGGGGCTAAGGGCCGCACTGGGCGCCTCATCCTTTCTCACTTGAAGACGC
TGGGCGCCAAGGAGGTCCTCGCTGTAGCACGCAACATCACGGGAGAGACG
AACGACGACGTGGTCAAGTGGGAAGCGGGCGACGTCAAGGACGCGAGCCA
TCTCAGCACAGTCCTCAAAGGGGCGTCGGCCGTGCTATTCACCGCTTCGG
CATCTCAAGGTTGGTCTCTCTTCGGTACCAATACACCGAAGCAAGTGGAC
TACGAAGGGTGTGTGCTGACAGCCAAGGCGGCTGTGCAGGCGAAGGTGCC
CCAGCTCGTCATTGTCAGTAGCGCTTTCGTGGCGAGGCCTTACCACCCGA
TTGCCCTCATGCTATCCACCTTGTTTGGCCGGGTCATGCAATGGAAGCGC
AAAGGTGAGCTCGAAGCCATTTCCATCACGCAGCAAGCAGGCTCTGTTAC
TTCCTATACCATAGTTCGACCGGGGGGTCTCTCGGATAAAAAGACGCCTA
AGGGATTACAAGGCATTCAGATCAGCCAGGGCGACACCGTAGGTGGGATG
ATTACGCGAGATGATACCGCTCTGGTGACGGCACAAGCCTTGCTATACCC
CACCACCAAAAATACTGTGTTTGAAGTGGTCTGGCACCAGGAGGAGAAGG
GGAAGGGGGGGGAAGAGCAGCAGCCCCCGCCGGTGCGGTACCAAGGTTGG
ACAGATTTCTTTTCTCGGTTACGCCCCAATATTGGCGCGCATGATTCTAC
ATTCTACCCCTCAGATCACGGGCAGCCCATGAAAGAGATGGGTCAAGGGG
AACTGTGA back to top
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