jgi.p|Nanoce1779_2|593616, mRNA_6056 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593616
Unique NamemRNA_6056
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1721
Alignment locationscaffold_14:426168..427888 -

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Properties
Property NameValue
TranscriptId593702
TrackFilteredModels2
ProteinId593616
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:426168..427888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593616gene_6056Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593616mRNA_6056-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6056CDS_6056Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6056 ID=mRNA_6056|Name=jgi.p|Nanoce1779_2|593616|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
AACAGCTGCTCAAAACAGTCATGCGAGCGCTCCGGCCAAGCGGCTGCACC
TTGGTCGAGTGCGGCAGCAGCACCACCCTCATCGTACAGCGGGTCGGCAG
AGGAGTCCTGCCTGCGTCGGCGGCAGCGTCATCATCCTCATCATCATTAC
CATCCTCATCATCATCGAAGGTAAGTTTATCAAAATGCCAACCCCATCTT
CGTGTTCTCTATTTGCCTGTGCGTCCAGGTGTCATGAAGGACCCTATTGT
TTGTACGATGTATTGCTACCGTTCGTGTATTCAAGAGGTATTGCCTAGAT
AATGGATTTTCACAGCCCTCTCCTACCTACAATTGAGTTTTGGGGGAACC
TAGGAATGAATTCCAGAGCCCTTTTGCACACGAGTTCCCAGTCATTCACT
CCATCCTGCCATGTGGTCTTACGTGTTTGTTTGTCTGTTTCTTTGCTTGT
TGGTGTTACACCGGGAAGCAAACCCTCGTACCAAGTCCCTGTCCTTGCGC
CTGTCTTGTCCTCCTGTCTCACCACCCACCACCCCACCTGGTATCAAACA
CACACACAGCCACGACCCTACCCTACTTTCAACCTTCGCTCCCTCGCAAC
TATGCCCCCCTATGTCAAGAAGTTCCAAACCGCCAAAACAGCCTACGCCT
CCGAAGTAGCCGCGGTCCGGAAAGAGTACATTGCGCAAGTTCAAGAACGC
AAGGAAGCCGAACAAGCCAAGCAACTCGCCGAAACCGCCCGCATCAAAGA
AGCCAAGCGTCAACGCCTCCTCGTTAAGGCTGCCCAGCGTAAGAAGAATA
TGGCCATCTTTCTCCAGGCCCAAAAGGAGCAACGAGAGCGATTTGAACGC
TATCTCGCCGCAATGCAGGAGGTCCGCGAAGCCTACACTTCTGAAGTCCG
AGCCAAGCAAGCCAATCTCCTCAAAGCCCTAACCGCAGAGTCCTCCCTTT
GGATCACGCCCGAAAACGTTGACGAGAAAATCACCGATGATCTTTTTGCT
GTCGCGGGACGCACCACATTCACCCCAACCCAACGCAGTCGTGACTGGCA
ATTTATGGCCTTGCCCCGCGTGCCCGATTTCTCGGCTTACTCGGAAGAGG
ACCTGTTTGATGAGAAGGAAGATAAACATTTTCTGACAGATAAGAGCCCC
TGGCGCGCGGAGGAAGGCTCATCGATTGTCATTCCGGAAGGGCATCATTT
CTATACTCCTGGACCTGCGGAAAACTTGCCGCGGAAGTTGTCGTCGTCTT
CGGATAGTGTTGATGAGGAGGGAGTACAGGGGGAAGAGGACAATATTTTG
TACTTTGAAGATGCGGCATACCGACCTAGTTTCTTGGCGGCATTGTACCA
AGGCGCTTATGAGGACTTTCAACCGTCGCAGGTACCGGACGGGGAGGTTG
AGCACATTCGGGAGTTGGCGGAGAGGTACGAGGAGCAGTTGCAGACTATT
TTGAAGCAGTCTCGGGGACGGGAGGGAAAGATGACGGGGGCGGGAGGGGC
GAGTAAGAAGGCGGCGTTTGACCCCAAGGCATTTTCGATAGAGCAGAAGG
ACGGGACTAACTAGTGGGCATATGGGCCAAAAGAAGAGTTCAAAGGCAGT
AGATAGAGTAGTGTGAGTGTGTTTCGGTGCGTAGTAGGGAATTGAGAAAA
AAGAATTAAGAATTAAGAATTAAGAAGAAGAAGAAAGCGGTTAAAGAAGA
AAAAGCAGAAATTGCGCCGGT
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protein sequence of jgi.p|Nanoce1779_2|593616

>mRNA_6056-protein ID=mRNA_6056-protein|Name=jgi.p|Nanoce1779_2|593616|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MDFHSPLLPTIEFWGNLGMNSRALLHTSSQSFTPSCHVVLRVCLSVSLLV
GVTPGSKPSYQVPVLAPVLSSCLTTHHPTWYQTHTQPRPYPTFNLRSLAT
MPPYVKKFQTAKTAYASEVAAVRKEYIAQVQERKEAEQAKQLAETARIKE
AKRQRLLVKAAQRKKNMAIFLQAQKEQRERFERYLAAMQEVREAYTSEVR
AKQANLLKALTAESSLWITPENVDEKITDDLFAVAGRTTFTPTQRSRDWQ
FMALPRVPDFSAYSEEDLFDEKEDKHFLTDKSPWRAEEGSSIVIPEGHHF
YTPGPAENLPRKLSSSSDSVDEEGVQGEEDNILYFEDAAYRPSFLAALYQ
GAYEDFQPSQVPDGEVEHIRELAERYEEQLQTILKQSRGREGKMTGAGGA
SKKAAFDPKAFSIEQKDGT
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mRNA from alignment at scaffold_14:426168..427888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6056 ID=mRNA_6056|Name=jgi.p|Nanoce1779_2|593616|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp|location=Sequence derived from alignment at scaffold_14:426168..427888- (Nannochloropsis oceanica)
AACAGCTGCTCAAAACAGTCATGCGAGCGCTCCGGCCAAGCGGCTGCACC
TTGGTCGAGTGCGGCAGCAGCACCACCCTCATCGTACAGCGGGTCGGCAG
AGGAGTCCTGCCTGCGTCGGCGGCAGCGTCATCATCCTCATCATCATTAC
CATCCTCATCATCATCGAAGGTAAGTTTATCAAAATGCCAACCCCATCTT
CGTGTTCTCTATTTGCCTGTGCGTCCAGGTGTCATGAAGGACCCTATTGT
TTGTACGATGTATTGCTACCGTTCGTGTATTCAAGAGGTATTGCCTAGAT
AATGGATTTTCACAGCCCTCTCCTACCTACAATTGAGTTTTGGGGGAACC
TAGGAATGAATTCCAGAGCCCTTTTGCACACGAGTTCCCAGTCATTCACT
CCATCCTGCCATGTGGTCTTACGTGTTTGTTTGTCTGTTTCTTTGCTTGT
TGGTGTTACACCGGGAAGCAAACCCTCGTACCAAGTCCCTGTCCTTGCGC
CTGTCTTGTCCTCCTGTCTCACCACCCACCACCCCACCTGGTATCAAACA
CACACACAGCCACGACCCTACCCTACTTTCAACCTTCGCTCCCTCGCAAC
TATGCCCCCCTATGTCAAGAAGTTCCAAACCGCCAAAACAGCCTACGCCT
CCGAAGTAGCCGCGGTCCGGAAAGAGTACATTGCGCAAGTTCAAGAACGC
AAGGAAGCCGAACAAGCCAAGCAACTCGCCGAAACCGCCCGCATCAAAGA
AGCCAAGCGTCAACGCCTCCTCGTTAAGGCTGCCCAGCGTAAGAAGAATA
TGGCCATCTTTCTCCAGGCCCAAAAGGAGCAACGAGAGCGATTTGAACGC
TATCTCGCCGCAATGCAGGAGGTCCGCGAAGCCTACACTTCTGAAGTCCG
AGCCAAGCAAGCCAATCTCCTCAAAGCCCTAACCGCAGAGTCCTCCCTTT
GGATCACGCCCGAAAACGTTGACGAGAAAATCACCGATGATCTTTTTGCT
GTCGCGGGACGCACCACATTCACCCCAACCCAACGCAGTCGTGACTGGCA
ATTTATGGCCTTGCCCCGCGTGCCCGATTTCTCGGCTTACTCGGAAGAGG
ACCTGTTTGATGAGAAGGAAGATAAACATTTTCTGACAGATAAGAGCCCC
TGGCGCGCGGAGGAAGGCTCATCGATTGTCATTCCGGAAGGGCATCATTT
CTATACTCCTGGACCTGCGGAAAACTTGCCGCGGAAGTTGTCGTCGTCTT
CGGATAGTGTTGATGAGGAGGGAGTACAGGGGGAAGAGGACAATATTTTG
TACTTTGAAGATGCGGCATACCGACCTAGTTTCTTGGCGGCATTGTACCA
AGGCGCTTATGAGGACTTTCAACCGTCGCAGGTACCGGACGGGGAGGTTG
AGCACATTCGGGAGTTGGCGGAGAGGTACGAGGAGCAGTTGCAGACTATT
TTGAAGCAGTCTCGGGGACGGGAGGGAAAGATGACGGGGGCGGGAGGGGC
GAGTAAGAAGGCGGCGTTTGACCCCAAGGCATTTTCGATAGAGCAGAAGG
ACGGGACTAACTAGTGGGCATATGGGCCAAAAGAAGAGTTCAAAGGCAGT
AGATAGAGTAGTGTGAGTGTGTTTCGGTGCGTAGTAGGGAATTGAGAAAA
AAGAATTAAGAATTAAGAATTAAGAAGAAGAAGAAAGCGGTTAAAGAAGA
AAAAGCAGAAATTGCGCCGGT
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Coding sequence (CDS) from alignment at scaffold_14:426168..427888-

>mRNA_6056 ID=mRNA_6056|Name=jgi.p|Nanoce1779_2|593616|organism=Nannochloropsis oceanica|type=CDS|length=1259bp|location=Sequence derived from alignment at scaffold_14:426168..427888- (Nannochloropsis oceanica)
ATGGATTTTCACAGCCCTCTCCTACCTACAATTGAGTTTTGGGGGAACCT
AGGAATGAATTCCAGAGCCCTTTTGCACACGAGTTCCCAGTCATTCACTC
CATCCTGCCATGTGGTCTTACGTGTTTGTTTGTCTGTTTCTTTGCTTGTT
GGTGTTACACCGGGAAGCAAACCCTCGTACCAAGTCCCTGTCCTTGCGCC
TGTCTTGTCCTCCTGTCTCACCACCCACCACCCCACCTGGTATCAAACAC
ACACACAGCCACGACCCTACCCTACTTTCAACCTTCGCTCCCTCGCAACT
ATGCCCCCCTATGTCAAGAAGTTCCAAACCGCCAAAACAGCCTACGCCTC
CGAAGTAGCCGCGGTCCGGAAAGAGTACATTGCGCAAGTTCAAGAACGCA
AGGAAGCCGAACAAGCCAAGCAACTCGCCGAAACCGCCCGCATCAAAGAA
GCCAAGCGTCAACGCCTCCTCGTTAAGGCTGCCCAGCGTAAGAAGAATAT
GGCCATCTTTCTCCAGGCCCAAAAGGAGCAACGAGAGCGATTTGAACGCT
ATCTCGCCGCAATGCAGGAGGTCCGCGAAGCCTACACTTCTGAAGTCCGA
GCCAAGCAAGCCAATCTCCTCAAAGCCCTAACCGCAGAGTCCTCCCTTTG
GATCACGCCCGAAAACGTTGACGAGAAAATCACCGATGATCTTTTTGCTG
TCGCGGGACGCACCACATTCACCCCAACCCAACGCAGTCGTGACTGGCAA
TTTATGGCCTTGCCCCGCGTGCCCGATTTCTCGGCTTACTCGGAAGAGGA
CCTGTTTGATGAGAAGGAAGATAAACATTTTCTGACAGATAAGAGCCCCT
GGCGCGCGGAGGAAGGCTCATCGATTGTCATTCCGGAAGGGCATCATTTC
TATACTCCTGGACCTGCGGAAAACTTGCCGCGGAAGTTGTCGTCGTCTTC
GGATAGTGTTGATGAGGAGGGAGTACAGGGGGAAGAGGACAATATTTTGT
ACTTTGAAGATGCGGCATACCGACCTAGTTTCTTGGCGGCATTGTACCAA
GGCGCTTATGAGGACTTTCAACCGTCGCAGGTACCGGACGGGGAGGTTGA
GCACATTCGGGAGTTGGCGGAGAGGTACGAGGAGCAGTTGCAGACTATTT
TGAAGCAGTCTCGGGGACGGGAGGGAAAGATGACGGGGGCGGGAGGGGCG
AGTAAGAAGGCGGCGTTTGACCCCAAGGCATTTTCGATAGAGCAGAAGGA
CGGGACTAA
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Synonyms
Publications