jgi.p|Nanoce1779_2|593611, mRNA_6054 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593611
Unique Name	mRNA_6054
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	978
Alignment location	scaffold_14:422218..423195 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593697
Track	FilteredModels2
ProteinId	593611

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:422218..423195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593611	gene_6054	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593611	mRNA_6054-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6054	CDS_6054	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:422218..423195+
coding sequence from alignment at scaffold_14:422218..423195+

mRNA sequence

>mRNA_6054 ID=mRNA_6054|Name=jgi.p|Nanoce1779_2|593611|organism=Nannochloropsis oceanica|type=mRNA|length=978bp
GGCAAACTGGTCCTTGCTCTCGGTGGAGACCACAGCATTGGTGTCGGCTC
AGTAGCGGGGGCGCTCAAGGCTCGGCCCGAGACGGCTGTTATTTGGGTAG
ATGCGCACGCGGACATAAATAGTCCACAGATTTCAGAGACTGGTCACTTG
CATGGAATGGTGCTCAGCTTTTTGATGGATTTGGACAAGGCTCGCGCGAT
GCAAGGGTTTCATTGGTTGAACGAGGAAAATGTGCCTAGGTTGCTACCGA
CGCGTTTGGCCTACGTGGGGCTGCGTGATGTGGACGCAGGCGAGAAAGCA
TTCATTCGTAGCCTGGGGATAAAAGCTTATAGCATGCATGAGGTGGACAA
GCATGGAATCGGCAAGGTCATGGAGATGGTGCTCGATCATCTCCTGGATC
GAAGCGAGCGGCCGTTGCACTTGAGTTTTGATATTGATGCGGTGGACCCT
CTTTATGCTCCTTCGACAGGGACGCGCGTGGCGGGCGGGCTAAGTTATCG
GGAGGCTTATTATATTTGTGAGGAGGTGGCGCATTCGGGATGTCTAGCAT
CGATGGATCTGGTGGAGGTGAATCCGTCTTTGACGATGGCGGGGGGGGAT
GAAAGGACTGTGGATATGGCGGTGGGTTTGATTTCGTCAGCATTGGGGAA
TAGCATTATTTAAAGAATGTGAGGTCGGTTGCTGCATTCAGTAGCGCACT
GAGTCGTCTGCCTCCTTGCTATGCACAGCAGTGTGACACCATGTAATATA
CTGAATAAAGGGAAGGAGCTACCAAGGGGGCATATGTGTAGTTAGGTGGA
TTAGAATGGAAACCCGAAAGAGAGCGACTTCAGGGTTCGAGAGAAAGAGG
CCGCATTAAGAAAACCGCGAATGAATGAATAGGAATGAGACAAGACGTTT
CCCCGTTGAACGTTAATGCGACACAGGCATGGGTATATGTGGTGGTGATA
AACTTACGATACTGCCCACAGACTTGTC

protein sequence of jgi.p|Nanoce1779_2|593611

>mRNA_6054-protein ID=mRNA_6054-protein|Name=jgi.p|Nanoce1779_2|593611|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MVLSFLMDLDKARAMQGFHWLNEENVPRLLPTRLAYVGLRDVDAGEKAFI
RSLGIKAYSMHEVDKHGIGKVMEMVLDHLLDRSERPLHLSFDIDAVDPLY
APSTGTRVAGGLSYREAYYICEEVAHSGCLASMDLVEVNPSLTMAGGDER
TVDMAVGLISSALGNSII*

mRNA from alignment at scaffold_14:422218..423195+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6054 ID=mRNA_6054|Name=jgi.p|Nanoce1779_2|593611|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at scaffold_14:422218..423195+ (Nannochloropsis oceanica)
GGCAAACTGGTCCTTGCTCTCGGTGGAGACCACAGCATTGGTGTCGGCTC
AGTAGCGGGGGCGCTCAAGGCTCGGCCCGAGACGGCTGTTATTTGGGTAG
ATGCGCACGCGGACATAAATAGTCCACAGATTTCAGAGACTGGTCACTTG
CATGGAATGGTGCTCAGCTTTTTGATGGATTTGGACAAGGCTCGCGCGAT
GCAAGGGTTTCATTGGTTGAACGAGGAAAATGTGCCTAGGTTGCTACCGA
CGCGTTTGGCCTACGTGGGGCTGCGTGATGTGGACGCAGGCGAGAAAGCA
TTCATTCGTAGCCTGGGGATAAAAGCTTATAGCATGCATGAGGTGGACAA
GCATGGAATCGGCAAGGTCATGGAGATGGTGCTCGATCATCTCCTGGATC
GAAGCGAGCGGCCGTTGCACTTGAGTTTTGATATTGATGCGGTGGACCCT
CTTTATGCTCCTTCGACAGGGACGCGCGTGGCGGGCGGGCTAAGTTATCG
GGAGGCTTATTATATTTGTGAGGAGGTGGCGCATTCGGGATGTCTAGCAT
CGATGGATCTGGTGGAGGTGAATCCGTCTTTGACGATGGCGGGGGGGGAT
GAAAGGACTGTGGATATGGCGGTGGGTTTGATTTCGTCAGCATTGGGGAA
TAGCATTATTTAAAGAATGTGAGGTCGGTTGCTGCATTCAGTAGCGCACT
GAGTCGTCTGCCTCCTTGCTATGCACAGCAGTGTGACACCATGTAATATA
CTGAATAAAGGGAAGGAGCTACCAAGGGGGCATATGTGTAGTTAGGTGGA
TTAGAATGGAAACCCGAAAGAGAGCGACTTCAGGGTTCGAGAGAAAGAGG
CCGCATTAAGAAAACCGCGAATGAATGAATAGGAATGAGACAAGACGTTT
CCCCGTTGAACGTTAATGCGACACAGGCATGGGTATATGTGGTGGTGATA
AACTTACGATACTGCCCACAGACTTGTC

Coding sequence (CDS) from alignment at scaffold_14:422218..423195+

>mRNA_6054 ID=mRNA_6054|Name=jgi.p|Nanoce1779_2|593611|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_14:422218..423195+ (Nannochloropsis oceanica)
ATGGTGCTCAGCTTTTTGATGGATTTGGACAAGGCTCGCGCGATGCAAGG
GTTTCATTGGTTGAACGAGGAAAATGTGCCTAGGTTGCTACCGACGCGTT
TGGCCTACGTGGGGCTGCGTGATGTGGACGCAGGCGAGAAAGCATTCATT
CGTAGCCTGGGGATAAAAGCTTATAGCATGCATGAGGTGGACAAGCATGG
AATCGGCAAGGTCATGGAGATGGTGCTCGATCATCTCCTGGATCGAAGCG
AGCGGCCGTTGCACTTGAGTTTTGATATTGATGCGGTGGACCCTCTTTAT
GCTCCTTCGACAGGGACGCGCGTGGCGGGCGGGCTAAGTTATCGGGAGGC
TTATTATATTTGTGAGGAGGTGGCGCATTCGGGATGTCTAGCATCGATGG
ATCTGGTGGAGGTGAATCCGTCTTTGACGATGGCGGGGGGGGATGAAAGG
ACTGTGGATATGGCGGTGGGTTTGATTTCGTCAGCATTGGGGAATAGCAT
TATTTAA

Synonyms

Publications