jgi.p|Nanoce1779_2|593603, mRNA_6052 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593603
Unique NamemRNA_6052
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1091
Alignment locationscaffold_14:414556..415646 +

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Properties
Property NameValue
TranscriptId593689
TrackFilteredModels2
ProteinId593603
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:414556..415646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593603gene_6052Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593603mRNA_6052-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6052CDS_6052Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6052 ID=mRNA_6052|Name=jgi.p|Nanoce1779_2|593603|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp
ACAGGGCCCTTTTTCAAACTCAGGGTCCGCTCCCCTAACATGGCAGCGCC
TCTTTCAAGGCAGCAGGGGTTCCTGCTCTGGGCCCTCCTTCTTATTTTCC
CACTCTTGCTCCTTCCAAGCACAACGATGGCTTCCCTCACGGCACCGAGC
GGCCCTGCTGGCCCGGCACCCAGTGTCTTTTATGACGCCTTTTCTACGCG
CATTTACGACCCCAAAGGTCGAGTCCTCCAGCTGGAGTACGCCCTCGAGG
CTTCGAAGAAAGGTGGTGCGGCAGTCGGGGCTGTGGGAGGAGATTTGGCC
GTGCTGGCCAGCTGGACTCCACGGACGTCGCGACGACAGGCACCCGCAGC
GCAGCAAGCCGCTTTAGGGCTCTGGCGCGGGGACGCCCACGTAGCTGTGG
CTGGAACAGGCTTGGCTACTGATATACTGGCTCTGGTGGAAGTTGCGCGG
CATGAGTGTTTGGCGCATAGATACGTGCATGAGTCTCCTTTGCGCGTGGG
CCGGCTGGTGACGCGGCTTGCGCAAGATGTATACGACACAGAGCGACATC
GCATCGTGCCGTACGCGTTGGATTTGCTTGTGGCAGGGTATGACTCTCAA
GGAGGGCCTTCTTTGTTCAAAGTGGGTCCTGCAGGTGTAATTGAATCTTT
TCGCGCCTGTGCAGTTGGCCGCCGTGCGGAACAGGGACGTGCTTACCTGT
TGGGGCGTTTGGGGGAGCCGCAAGCCAGTGAGCCAGGCGCCAGCCATCCG
GGCTTGCGACGACTTGCTACCATGGTACTGCGTGCACTCTTAATGACTAT
TGTCGAAGAAGAGGGGAGGGGGGGTGAGGGCCGCGATCGAGAGGAGGAGC
ATCAGAGCGTGGAGGAAGACATTTCGATGGTGGTGATTGGAAAGGAGATT
TCTTACACGCCACTCATTGTTGCTTGGGACCCGCACCGACGGCGAATGGA
AGTGCGCATCCCAGCCGCCCTTGCTGCTGTTCTTGAAGATGAAGAATGGA
GGAGTATAGACCAGGCGGACGGTTCCACGCCACCGCGGTGATGTAAATGG
CGTGTATATACAACAATGAAATGATCGAGTAAAAAAGTAAC
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protein sequence of jgi.p|Nanoce1779_2|593603

>mRNA_6052-protein ID=mRNA_6052-protein|Name=jgi.p|Nanoce1779_2|593603|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MAAPLSRQQGFLLWALLLIFPLLLLPSTTMASLTAPSGPAGPAPSVFYDA
FSTRIYDPKGRVLQLEYALEASKKGGAAVGAVGGDLAVLASWTPRTSRRQ
APAAQQAALGLWRGDAHVAVAGTGLATDILALVEVARHECLAHRYVHESP
LRVGRLVTRLAQDVYDTERHRIVPYALDLLVAGYDSQGGPSLFKVGPAGV
IESFRACAVGRRAEQGRAYLLGRLGEPQASEPGASHPGLRRLATMVLRAL
LMTIVEEEGRGGEGRDREEEHQSVEEDISMVVIGKEISYTPLIVAWDPHR
RRMEVRIPAALAAVLEDEEWRSIDQADGSTPPR*
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mRNA from alignment at scaffold_14:414556..415646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6052 ID=mRNA_6052|Name=jgi.p|Nanoce1779_2|593603|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp|location=Sequence derived from alignment at scaffold_14:414556..415646+ (Nannochloropsis oceanica)
ACAGGGCCCTTTTTCAAACTCAGGGTCCGCTCCCCTAACATGGCAGCGCC
TCTTTCAAGGCAGCAGGGGTTCCTGCTCTGGGCCCTCCTTCTTATTTTCC
CACTCTTGCTCCTTCCAAGCACAACGATGGCTTCCCTCACGGCACCGAGC
GGCCCTGCTGGCCCGGCACCCAGTGTCTTTTATGACGCCTTTTCTACGCG
CATTTACGACCCCAAAGGTCGAGTCCTCCAGCTGGAGTACGCCCTCGAGG
CTTCGAAGAAAGGTGGTGCGGCAGTCGGGGCTGTGGGAGGAGATTTGGCC
GTGCTGGCCAGCTGGACTCCACGGACGTCGCGACGACAGGCACCCGCAGC
GCAGCAAGCCGCTTTAGGGCTCTGGCGCGGGGACGCCCACGTAGCTGTGG
CTGGAACAGGCTTGGCTACTGATATACTGGCTCTGGTGGAAGTTGCGCGG
CATGAGTGTTTGGCGCATAGATACGTGCATGAGTCTCCTTTGCGCGTGGG
CCGGCTGGTGACGCGGCTTGCGCAAGATGTATACGACACAGAGCGACATC
GCATCGTGCCGTACGCGTTGGATTTGCTTGTGGCAGGGTATGACTCTCAA
GGAGGGCCTTCTTTGTTCAAAGTGGGTCCTGCAGGTGTAATTGAATCTTT
TCGCGCCTGTGCAGTTGGCCGCCGTGCGGAACAGGGACGTGCTTACCTGT
TGGGGCGTTTGGGGGAGCCGCAAGCCAGTGAGCCAGGCGCCAGCCATCCG
GGCTTGCGACGACTTGCTACCATGGTACTGCGTGCACTCTTAATGACTAT
TGTCGAAGAAGAGGGGAGGGGGGGTGAGGGCCGCGATCGAGAGGAGGAGC
ATCAGAGCGTGGAGGAAGACATTTCGATGGTGGTGATTGGAAAGGAGATT
TCTTACACGCCACTCATTGTTGCTTGGGACCCGCACCGACGGCGAATGGA
AGTGCGCATCCCAGCCGCCCTTGCTGCTGTTCTTGAAGATGAAGAATGGA
GGAGTATAGACCAGGCGGACGGTTCCACGCCACCGCGGTGATGTAAATGG
CGTGTATATACAACAATGAAATGATCGAGTAAAAAAGTAAC
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Coding sequence (CDS) from alignment at scaffold_14:414556..415646+

>mRNA_6052 ID=mRNA_6052|Name=jgi.p|Nanoce1779_2|593603|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_14:414556..415646+ (Nannochloropsis oceanica)
ATGGCAGCGCCTCTTTCAAGGCAGCAGGGGTTCCTGCTCTGGGCCCTCCT
TCTTATTTTCCCACTCTTGCTCCTTCCAAGCACAACGATGGCTTCCCTCA
CGGCACCGAGCGGCCCTGCTGGCCCGGCACCCAGTGTCTTTTATGACGCC
TTTTCTACGCGCATTTACGACCCCAAAGGTCGAGTCCTCCAGCTGGAGTA
CGCCCTCGAGGCTTCGAAGAAAGGTGGTGCGGCAGTCGGGGCTGTGGGAG
GAGATTTGGCCGTGCTGGCCAGCTGGACTCCACGGACGTCGCGACGACAG
GCACCCGCAGCGCAGCAAGCCGCTTTAGGGCTCTGGCGCGGGGACGCCCA
CGTAGCTGTGGCTGGAACAGGCTTGGCTACTGATATACTGGCTCTGGTGG
AAGTTGCGCGGCATGAGTGTTTGGCGCATAGATACGTGCATGAGTCTCCT
TTGCGCGTGGGCCGGCTGGTGACGCGGCTTGCGCAAGATGTATACGACAC
AGAGCGACATCGCATCGTGCCGTACGCGTTGGATTTGCTTGTGGCAGGGT
ATGACTCTCAAGGAGGGCCTTCTTTGTTCAAAGTGGGTCCTGCAGGTGTA
ATTGAATCTTTTCGCGCCTGTGCAGTTGGCCGCCGTGCGGAACAGGGACG
TGCTTACCTGTTGGGGCGTTTGGGGGAGCCGCAAGCCAGTGAGCCAGGCG
CCAGCCATCCGGGCTTGCGACGACTTGCTACCATGGTACTGCGTGCACTC
TTAATGACTATTGTCGAAGAAGAGGGGAGGGGGGGTGAGGGCCGCGATCG
AGAGGAGGAGCATCAGAGCGTGGAGGAAGACATTTCGATGGTGGTGATTG
GAAAGGAGATTTCTTACACGCCACTCATTGTTGCTTGGGACCCGCACCGA
CGGCGAATGGAAGTGCGCATCCCAGCCGCCCTTGCTGCTGTTCTTGAAGA
TGAAGAATGGAGGAGTATAGACCAGGCGGACGGTTCCACGCCACCGCGGT
GA
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Synonyms
Publications