jgi.p|Nanoce1779_2|593598, mRNA_6050 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593598
Unique NamemRNA_6050
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1529
Alignment locationscaffold_14:403994..405522 +

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Properties
Property NameValue
TranscriptId593684
TrackFilteredModels2
ProteinId593598
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:403994..405522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593598gene_6050Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593598mRNA_6050-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6050CDS_6050Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6050 ID=mRNA_6050|Name=jgi.p|Nanoce1779_2|593598|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp
AGCGAGCGCCCACCCATCAGAATATTCACGTCAGAAGGCCTGAGCACGAT
CACGGCATCGACCACACCCTCGTCCAGCAGCGACTATGGCGACGGAGGTG
GTTGCCCAAACCTCTGTGCACACGAGCCTTGACACCCACGAAGAGTTGCT
GAGCACGACCAATGCCATCCTCCAAAGTGCGAAGTCCCGACGATGGTTTC
GTGGAGGCGGGAACGAGAAGGAGCTGTGTTTGATCGCAGCCGCCCAATAT
GAAGCGCAGGCAAAAGAGCTTCGCGTCGCAATCAGTCTCTTGGGACCCTC
GAGTATTAACAACGGCATCAGCAGTGGTAGCAACAGTAACAGTAGCATGA
ACAGCAAGGTACCTACAGTGGACACGATCCCCTCGTCGGAGGAGCAGGGA
CGGAAAACGGATGAAGCATTGGAGGAGGGACAAGAAAGAGAGCAAGAACA
GGCCACGGCCCAGGCGGCTCCTACGCGGGCGAGTCTCCTTCTCGGCGCCG
TCAAAGGCTTCTTGTTCCGCCGCCTCATCGACGGTAATTTGGACGATGCC
TTGCAAAGTGTGAAAGACATTCAAACCCTTGCGGACTGTCTCAAGACTCA
AGCGGAGCTGGACGTGGGGCATTGGACGACTGGAGGGGGCTACGTGAAAC
CCGAGGAGTTGGAATTGCTCTATTTGATCCGACAGATAATTTTGTGCGAG
GGAGAAAAGGCCCGATACTACGAGAAGCACCCGACGTTGGACCGGCACGA
TGAGAGCGAGCTCAAGGGAGAGTCCGTCGACGTGTGCAAGCGCCTTCTGC
GGTATAAGTCGCTTTTTCATATTCGCAGCAGCCGTTGGTTCAGCGTTTAT
TGTGACGACTACCAGGTGGCGGCCGATCCCCATTTTCCCCAGTCCAAGCC
CAATTCATTTCATGTGCAATGCTTCTTTGACGGCACTATTCGGGAGGAAG
ACGTGGCGAACAACACGATGGGCGCACGGATCCGAGCGGCACAGAAAAAG
CGCCGATTCCGTCTTCCCTCCCCCTTTCGCGACAGCACCAGTCGGTGGGG
GACTACCACCAGCAAACACCAATTCTCGTTCCAAGGGTTCTTGACGCAAA
TGACTTCCTCCTTCTTTGTCTTGAGCCAGATGTTGACGCCAACATTCTTT
TTCCATCGCTTAATCCAGCGCGGCCCGAAGGGGTTGGCTGTGTGTGCGAT
GGACGAAGAGAGCAAGGAGGCGGACGCTTATGTGTAAGGAGCGCTGTTTG
AAGAGGGAGAGGAGGGAGATAATTGTCCTCGAGCCAAATAAAACGGCGCA
CAGTGAAATTCAGCAAGGAAATGAAGAAGAGATGGGTACACTTAATTGAT
AAAGTGCAAAAATATGCCCACGAGTATGTGTGGATTGAATGACAGACTGT
CCTAAAGGCCAAGAAGGAAGAAGGAAACATGACAGGGATGGTGAGAGAGA
AAGAGAAAAGTTAAGCATGGAGTGAAAATGCCCTCACAATTTCCGAAAGC
AAAGCACTAATAGCACCACACCAGCGTGA
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protein sequence of jgi.p|Nanoce1779_2|593598

>mRNA_6050-protein ID=mRNA_6050-protein|Name=jgi.p|Nanoce1779_2|593598|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MATEVVAQTSVHTSLDTHEELLSTTNAILQSAKSRRWFRGGGNEKELCLI
AAAQYEAQAKELRVAISLLGPSSINNGISSGSNSNSSMNSKVPTVDTIPS
SEEQGRKTDEALEEGQEREQEQATAQAAPTRASLLLGAVKGFLFRRLIDG
NLDDALQSVKDIQTLADCLKTQAELDVGHWTTGGGYVKPEELELLYLIRQ
IILCEGEKARYYEKHPTLDRHDESELKGESVDVCKRLLRYKSLFHIRSSR
WFSVYCDDYQVAADPHFPQSKPNSFHVQCFFDGTIREEDVANNTMGARIR
AAQKKRRFRLPSPFRDSTSRWGTTTSKHQFSFQGFLTQMTSSFFVLSQML
TPTFFFHRLIQRGPKGLAVCAMDEESKEADAYV*
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mRNA from alignment at scaffold_14:403994..405522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6050 ID=mRNA_6050|Name=jgi.p|Nanoce1779_2|593598|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp|location=Sequence derived from alignment at scaffold_14:403994..405522+ (Nannochloropsis oceanica)
AGCGAGCGCCCACCCATCAGAATATTCACGTCAGAAGGCCTGAGCACGAT
CACGGCATCGACCACACCCTCGTCCAGCAGCGACTATGGCGACGGAGGTG
GTTGCCCAAACCTCTGTGCACACGAGCCTTGACACCCACGAAGAGTTGCT
GAGCACGACCAATGCCATCCTCCAAAGTGCGAAGTCCCGACGATGGTTTC
GTGGAGGCGGGAACGAGAAGGAGCTGTGTTTGATCGCAGCCGCCCAATAT
GAAGCGCAGGCAAAAGAGCTTCGCGTCGCAATCAGTCTCTTGGGACCCTC
GAGTATTAACAACGGCATCAGCAGTGGTAGCAACAGTAACAGTAGCATGA
ACAGCAAGGTACCTACAGTGGACACGATCCCCTCGTCGGAGGAGCAGGGA
CGGAAAACGGATGAAGCATTGGAGGAGGGACAAGAAAGAGAGCAAGAACA
GGCCACGGCCCAGGCGGCTCCTACGCGGGCGAGTCTCCTTCTCGGCGCCG
TCAAAGGCTTCTTGTTCCGCCGCCTCATCGACGGTAATTTGGACGATGCC
TTGCAAAGTGTGAAAGACATTCAAACCCTTGCGGACTGTCTCAAGACTCA
AGCGGAGCTGGACGTGGGGCATTGGACGACTGGAGGGGGCTACGTGAAAC
CCGAGGAGTTGGAATTGCTCTATTTGATCCGACAGATAATTTTGTGCGAG
GGAGAAAAGGCCCGATACTACGAGAAGCACCCGACGTTGGACCGGCACGA
TGAGAGCGAGCTCAAGGGAGAGTCCGTCGACGTGTGCAAGCGCCTTCTGC
GGTATAAGTCGCTTTTTCATATTCGCAGCAGCCGTTGGTTCAGCGTTTAT
TGTGACGACTACCAGGTGGCGGCCGATCCCCATTTTCCCCAGTCCAAGCC
CAATTCATTTCATGTGCAATGCTTCTTTGACGGCACTATTCGGGAGGAAG
ACGTGGCGAACAACACGATGGGCGCACGGATCCGAGCGGCACAGAAAAAG
CGCCGATTCCGTCTTCCCTCCCCCTTTCGCGACAGCACCAGTCGGTGGGG
GACTACCACCAGCAAACACCAATTCTCGTTCCAAGGGTTCTTGACGCAAA
TGACTTCCTCCTTCTTTGTCTTGAGCCAGATGTTGACGCCAACATTCTTT
TTCCATCGCTTAATCCAGCGCGGCCCGAAGGGGTTGGCTGTGTGTGCGAT
GGACGAAGAGAGCAAGGAGGCGGACGCTTATGTGTAAGGAGCGCTGTTTG
AAGAGGGAGAGGAGGGAGATAATTGTCCTCGAGCCAAATAAAACGGCGCA
CAGTGAAATTCAGCAAGGAAATGAAGAAGAGATGGGTACACTTAATTGAT
AAAGTGCAAAAATATGCCCACGAGTATGTGTGGATTGAATGACAGACTGT
CCTAAAGGCCAAGAAGGAAGAAGGAAACATGACAGGGATGGTGAGAGAGA
AAGAGAAAAGTTAAGCATGGAGTGAAAATGCCCTCACAATTTCCGAAAGC
AAAGCACTAATAGCACCACACCAGCGTGA
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Coding sequence (CDS) from alignment at scaffold_14:403994..405522+

>mRNA_6050 ID=mRNA_6050|Name=jgi.p|Nanoce1779_2|593598|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_14:403994..405522+ (Nannochloropsis oceanica)
ATGGCGACGGAGGTGGTTGCCCAAACCTCTGTGCACACGAGCCTTGACAC
CCACGAAGAGTTGCTGAGCACGACCAATGCCATCCTCCAAAGTGCGAAGT
CCCGACGATGGTTTCGTGGAGGCGGGAACGAGAAGGAGCTGTGTTTGATC
GCAGCCGCCCAATATGAAGCGCAGGCAAAAGAGCTTCGCGTCGCAATCAG
TCTCTTGGGACCCTCGAGTATTAACAACGGCATCAGCAGTGGTAGCAACA
GTAACAGTAGCATGAACAGCAAGGTACCTACAGTGGACACGATCCCCTCG
TCGGAGGAGCAGGGACGGAAAACGGATGAAGCATTGGAGGAGGGACAAGA
AAGAGAGCAAGAACAGGCCACGGCCCAGGCGGCTCCTACGCGGGCGAGTC
TCCTTCTCGGCGCCGTCAAAGGCTTCTTGTTCCGCCGCCTCATCGACGGT
AATTTGGACGATGCCTTGCAAAGTGTGAAAGACATTCAAACCCTTGCGGA
CTGTCTCAAGACTCAAGCGGAGCTGGACGTGGGGCATTGGACGACTGGAG
GGGGCTACGTGAAACCCGAGGAGTTGGAATTGCTCTATTTGATCCGACAG
ATAATTTTGTGCGAGGGAGAAAAGGCCCGATACTACGAGAAGCACCCGAC
GTTGGACCGGCACGATGAGAGCGAGCTCAAGGGAGAGTCCGTCGACGTGT
GCAAGCGCCTTCTGCGGTATAAGTCGCTTTTTCATATTCGCAGCAGCCGT
TGGTTCAGCGTTTATTGTGACGACTACCAGGTGGCGGCCGATCCCCATTT
TCCCCAGTCCAAGCCCAATTCATTTCATGTGCAATGCTTCTTTGACGGCA
CTATTCGGGAGGAAGACGTGGCGAACAACACGATGGGCGCACGGATCCGA
GCGGCACAGAAAAAGCGCCGATTCCGTCTTCCCTCCCCCTTTCGCGACAG
CACCAGTCGGTGGGGGACTACCACCAGCAAACACCAATTCTCGTTCCAAG
GGTTCTTGACGCAAATGACTTCCTCCTTCTTTGTCTTGAGCCAGATGTTG
ACGCCAACATTCTTTTTCCATCGCTTAATCCAGCGCGGCCCGAAGGGGTT
GGCTGTGTGTGCGATGGACGAAGAGAGCAAGGAGGCGGACGCTTATGTGT
AA
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Synonyms
Publications