jgi.p|Nanoce1779_2|577914, mRNA_605 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577914
Unique Name	mRNA_605
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1475
Alignment location	scaffold_3:1513334..1514808 +

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Properties


Property Name	Value
TranscriptId	578000
Track	FilteredModels2
ProteinId	577914

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1513334..1514808 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577914	gene_605	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577914	mRNA_605-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_605	CDS_605	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1513334..1514808+
coding sequence from alignment at scaffold_3:1513334..1514808+

mRNA sequence

>mRNA_605 ID=mRNA_605|Name=jgi.p|Nanoce1779_2|577914|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
TCCAGTCCATTTAAACAAATTCATCTGTGTGGCGCGTTATGGCAATCAGC
ACTCTCAATCACTCGCGTTCTGATGGCCTTTCTTGCTGTCCTTTACCTTT
ATTCATACGGTTAATAGCCCACACTCGGAAGGATTCCGTCAGAGTGCTTA
CTTGAAAGACTCTGAAGATGACTCCCCCCCCTCTCTGGTGGTATAACATA
TGACCCTTCTCCATGTGGCCCATTCAGTGCCGCCAGGATCTTCTGACGAG
CACATCCACATCCACTCTCTCTCTTTTCTCTCTCTTTCTCTTTCTCTTTC
TCTTTCTCTCTTTTCTATCTCACGCACACTCATAAACACACATGCACACA
CATACATACTTCCTAACTCTTTCTCACAGACATACATGTGTATCATCCAC
ATCCACCTTCCTCACACGCGGATGCTCACACACAAATGCATCTTCTTTCT
TTTTCTCACACACATTACACATAAAGCAGTCCACCAACAATCTACCTTGA
GGAACTTCAGTCTGTTGTCAACTAACCCTCTTCGCCGTTTTCTCGTCCCC
GATATCATCCACAGTCTTTTGTTAGTCATCACCATCTCCACACACTTATC
AAAAATCCAGCACCACCATCTTCGAGCAACCCATGGAGCGAAGAAGACCT
TTCCCGCTTCTTTCTTTCGCGCATTTTCCTTACTTTCTTCTCTCTCCTTT
TCCCATCCATCTCCTCTAGCCTTCCCATTTTGTTCTTGCGAATGGCCTGC
CTTCCGTCAAGAACTCATTCTCCAACGAGCCATACCGCACCGCTCTCTCC
TCTTCACACACGTACCGGCGTCAGTCGGGGCACATGACCGACTGCCGGCG
TCAGCATTTTCGAGATATTGTTGCTTTTGTTGCTGCTGTTGCTGCTGCTA
TCATCGTGGGCGCAGGAAGGAGAAGAGGCGGAGCGGATGACGGTTGGCTG
TTGTGCAGCAAGGGGATTCGCCAGCCTTCCCATCGCCCTCTGGTGGCTGC
TGTTGCCGGTGCTGCTGAAGTCCACAAAAGAGGCGCAACGACGAATTTTA
TTGCTGCTGCAGCAGCTGCTGTTATTGATGCTGCTGCTTATGCTTCCAGC
GACGCCGGCGGCGGTGGTGGTCAAGAGGAGGGCAAGTCGCCTCTGGTCCT
CGACGGAAGCACAACGACGCAGCAGCCCATCCACTTCTCCTTTAATCAAC
AGCTTCTCATGTGGCTCCGCTGCTGCTAACCTTGCCCTTCCTCCGCCTTC
TGCTACTATTGCTGAGAAACAATCGAGGGGAGAACGAGGGCAGGCTATAT
TTTTAGGGGTGACAGAGGAAGAGGGAGTGGAGGGAAAGAGGGGAGAGTCG
TCATCTAACCCTCCCTCCCCACCTTCTTCATCCTCCTCCTCCTTCTCCTC
CTCCTCTCCACAGTCCAGAATTTCAATTGCCATGCACTGCACCTTCTCTT
CCTTCCCCTCCTTCCCCTCCTCCTC

protein sequence of jgi.p|Nanoce1779_2|577914

>mRNA_605-protein ID=mRNA_605-protein|Name=jgi.p|Nanoce1779_2|577914|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MTLLHVAHSVPPGSSDEHIHIHSLSFLSLSLSLSLSLFSISRTLINTHAH
TYILPNSFSQTYMCIIHIHLPHTRMLTHKCIFFLFLTHITHKAVHQQSTL
RNFSLLSTNPLRRFLVPDIIHSLLLVITISTHLSKIQHHHLRATHGAKKT
FPASFFRAFSLLSSLSFSHPSPLAFPFCSCEWPAFRQELILQRAIPHRSL
LFTHVPASVGAHDRLPASAFSRYCCFCCCCCCCYHRGRRKEKRRSG*

mRNA from alignment at scaffold_3:1513334..1514808+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_605 ID=mRNA_605|Name=jgi.p|Nanoce1779_2|577914|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp|location=Sequence derived from alignment at scaffold_3:1513334..1514808+ (Nannochloropsis oceanica)
TCCAGTCCATTTAAACAAATTCATCTGTGTGGCGCGTTATGGCAATCAGC
ACTCTCAATCACTCGCGTTCTGATGGCCTTTCTTGCTGTCCTTTACCTTT
ATTCATACGGTTAATAGCCCACACTCGGAAGGATTCCGTCAGAGTGCTTA
CTTGAAAGACTCTGAAGATGACTCCCCCCCCTCTCTGGTGGTATAACATA
TGACCCTTCTCCATGTGGCCCATTCAGTGCCGCCAGGATCTTCTGACGAG
CACATCCACATCCACTCTCTCTCTTTTCTCTCTCTTTCTCTTTCTCTTTC
TCTTTCTCTCTTTTCTATCTCACGCACACTCATAAACACACATGCACACA
CATACATACTTCCTAACTCTTTCTCACAGACATACATGTGTATCATCCAC
ATCCACCTTCCTCACACGCGGATGCTCACACACAAATGCATCTTCTTTCT
TTTTCTCACACACATTACACATAAAGCAGTCCACCAACAATCTACCTTGA
GGAACTTCAGTCTGTTGTCAACTAACCCTCTTCGCCGTTTTCTCGTCCCC
GATATCATCCACAGTCTTTTGTTAGTCATCACCATCTCCACACACTTATC
AAAAATCCAGCACCACCATCTTCGAGCAACCCATGGAGCGAAGAAGACCT
TTCCCGCTTCTTTCTTTCGCGCATTTTCCTTACTTTCTTCTCTCTCCTTT
TCCCATCCATCTCCTCTAGCCTTCCCATTTTGTTCTTGCGAATGGCCTGC
CTTCCGTCAAGAACTCATTCTCCAACGAGCCATACCGCACCGCTCTCTCC
TCTTCACACACGTACCGGCGTCAGTCGGGGCACATGACCGACTGCCGGCG
TCAGCATTTTCGAGATATTGTTGCTTTTGTTGCTGCTGTTGCTGCTGCTA
TCATCGTGGGCGCAGGAAGGAGAAGAGGCGGAGCGGATGACGGTTGGCTG
TTGTGCAGCAAGGGGATTCGCCAGCCTTCCCATCGCCCTCTGGTGGCTGC
TGTTGCCGGTGCTGCTGAAGTCCACAAAAGAGGCGCAACGACGAATTTTA
TTGCTGCTGCAGCAGCTGCTGTTATTGATGCTGCTGCTTATGCTTCCAGC
GACGCCGGCGGCGGTGGTGGTCAAGAGGAGGGCAAGTCGCCTCTGGTCCT
CGACGGAAGCACAACGACGCAGCAGCCCATCCACTTCTCCTTTAATCAAC
AGCTTCTCATGTGGCTCCGCTGCTGCTAACCTTGCCCTTCCTCCGCCTTC
TGCTACTATTGCTGAGAAACAATCGAGGGGAGAACGAGGGCAGGCTATAT
TTTTAGGGGTGACAGAGGAAGAGGGAGTGGAGGGAAAGAGGGGAGAGTCG
TCATCTAACCCTCCCTCCCCACCTTCTTCATCCTCCTCCTCCTTCTCCTC
CTCCTCTCCACAGTCCAGAATTTCAATTGCCATGCACTGCACCTTCTCTT
CCTTCCCCTCCTTCCCCTCCTCCTC

Coding sequence (CDS) from alignment at scaffold_3:1513334..1514808+

>mRNA_605 ID=mRNA_605|Name=jgi.p|Nanoce1779_2|577914|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_3:1513334..1514808+ (Nannochloropsis oceanica)
ATGACCCTTCTCCATGTGGCCCATTCAGTGCCGCCAGGATCTTCTGACGA
GCACATCCACATCCACTCTCTCTCTTTTCTCTCTCTTTCTCTTTCTCTTT
CTCTTTCTCTCTTTTCTATCTCACGCACACTCATAAACACACATGCACAC
ACATACATACTTCCTAACTCTTTCTCACAGACATACATGTGTATCATCCA
CATCCACCTTCCTCACACGCGGATGCTCACACACAAATGCATCTTCTTTC
TTTTTCTCACACACATTACACATAAAGCAGTCCACCAACAATCTACCTTG
AGGAACTTCAGTCTGTTGTCAACTAACCCTCTTCGCCGTTTTCTCGTCCC
CGATATCATCCACAGTCTTTTGTTAGTCATCACCATCTCCACACACTTAT
CAAAAATCCAGCACCACCATCTTCGAGCAACCCATGGAGCGAAGAAGACC
TTTCCCGCTTCTTTCTTTCGCGCATTTTCCTTACTTTCTTCTCTCTCCTT
TTCCCATCCATCTCCTCTAGCCTTCCCATTTTGTTCTTGCGAATGGCCTG
CCTTCCGTCAAGAACTCATTCTCCAACGAGCCATACCGCACCGCTCTCTC
CTCTTCACACACGTACCGGCGTCAGTCGGGGCACATGACCGACTGCCGGC
GTCAGCATTTTCGAGATATTGTTGCTTTTGTTGCTGCTGTTGCTGCTGCT
ATCATCGTGGGCGCAGGAAGGAGAAGAGGCGGAGCGGATGA

Synonyms

Publications