jgi.p|Nanoce1779_2|640099, mRNA_6049 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640099
Unique NamemRNA_6049
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1362
Alignment locationscaffold_14:402352..403713 -

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Properties
Property NameValue
TranscriptId640185
TrackFilteredModels2
ProteinId640099
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:402352..403713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640099gene_6049Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6049CDS_6049Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640099mRNA_6049-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6049 ID=mRNA_6049|Name=jgi.p|Nanoce1779_2|640099|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGGCAAGAATACCTTGCCGACGACTGGACTGCTTTCTCCTTCTCCTCCT
TGCTGTTACCCCTTACACTACACCTGCAGCTGTAGCGGTTGCATCTATTC
CCACGCCCTCCTCCCTTCCAGTGCTGCAGTCCCCTCTCAAGAAAGGACGA
CAAGAGCCCCCGGCAACCCCTTCCCGCAGCACCTGGGACATCAAGACATT
CCATGCCTTTGTGAAAGCGCGGACGGGAGGGATGTGTGCCGCTTTGGCGG
GGCCCGCGTCCTCCACATCGTCTCCAACCGTGTATTGGGTGCTGCGAGGC
CAGCTCTCTAATCCTTTCACAGGGGACGTCATTGCAAATGTGCGGGGGTT
GGAGGTGCTCTATCTTTTGGGGTATACCCAGGCGCCAGATATTCCCAAGA
TAAGCAAGTATCAAACACTGGCTATCGCGCCATTGCCACCATCAGTCAGT
CACGCCTTGCCGGGCACACGCAAATGCTTGCATTTACCTGAGCCTCAAGC
CGACAACAGCAATAAGGCCAAGGCTGAAACCAAGGCAAACGCTTCGTCAT
CCGTTTCTAAGAAACAACCGTGGTGTGCGGTCGCCACCACAATCTCAGCC
AAGACGTTTAGGTATTTCGAACCACTCACAAACCAACCCTTACTGACATT
TCGGCCTGGCCCGCGCGCGAAGCCCCGGCAGGTACCCCTCGCTGTAACTA
CAACGCAAGCCGTCAGTTATGTGTTGTCACGCTCTGGTCATCTTCACTTG
GTCGCTGAGAGTGTCACTGGTGGATTGATGGCAGTGCAGGACCAAGGCGC
TGGGCCCGTGTGCAAGGCGAAGCGGAGCAAGTTGTTGTCCTTGTTCTTTC
CAATGCCAGCCCCTAAAACTTTTGAACTTTCCTTGCTCATGTGGCCTGGT
TCGAAGCGAAGCAATCACGGAATGAGCAGTGGCAGCAGCGGCAGCAATGG
GGTGGAGGATGGTGGTGGTGGTGGAGGGGGTTTCCCGTGGGGCTCAATCA
TTCAATTTGGTGCTTCTTCAGCACAACCAGCTTGTCGAGAGCTGTATGCA
CTCAGTACAGAACCGGCATCCAAGCAGCAGGGGCGACGACCACGCATGAA
GTATCTTCGATATGGGGAGGCGCCGCATTGGTGTGGTGCTGGGCGAGTGT
GTCACTTGGCTTTGAAGGGCACCAGATACGATCGCCTGCAGGACATTCCG
CGAGAGGAGCGGCAGCTATTTTTCCCCAACACTAAAAAGGGGTTGGAAGG
GGAGGAGGGAGGATCCCTGCTGGCTGTTTTTCCGCCTGGGTCGGCGCAGG
AATTTTTGGACGAAGCAGAAAGAGTCCGACGGACACAGCGGAAGCGATTT
ATCTTTTTTTAA
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protein sequence of jgi.p|Nanoce1779_2|640099

>mRNA_6049-protein ID=mRNA_6049-protein|Name=jgi.p|Nanoce1779_2|640099|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MARIPCRRLDCFLLLLLAVTPYTTPAAVAVASIPTPSSLPVLQSPLKKGR
QEPPATPSRSTWDIKTFHAFVKARTGGMCAALAGPASSTSSPTVYWVLRG
QLSNPFTGDVIANVRGLEVLYLLGYTQAPDIPKISKYQTLAIAPLPPSVS
HALPGTRKCLHLPEPQADNSNKAKAETKANASSSVSKKQPWCAVATTISA
KTFRYFEPLTNQPLLTFRPGPRAKPRQVPLAVTTTQAVSYVLSRSGHLHL
VAESVTGGLMAVQDQGAGPVCKAKRSKLLSLFFPMPAPKTFELSLLMWPG
SKRSNHGMSSGSSGSNGVEDGGGGGGGFPWGSIIQFGASSAQPACRELYA
LSTEPASKQQGRRPRMKYLRYGEAPHWCGAGRVCHLALKGTRYDRLQDIP
REERQLFFPNTKKGLEGEEGGSLLAVFPPGSAQEFLDEAERVRRTQRKRF
IFF*
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mRNA from alignment at scaffold_14:402352..403713-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6049 ID=mRNA_6049|Name=jgi.p|Nanoce1779_2|640099|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at scaffold_14:402352..403713- (Nannochloropsis oceanica)
ATGGCAAGAATACCTTGCCGACGACTGGACTGCTTTCTCCTTCTCCTCCT
TGCTGTTACCCCTTACACTACACCTGCAGCTGTAGCGGTTGCATCTATTC
CCACGCCCTCCTCCCTTCCAGTGCTGCAGTCCCCTCTCAAGAAAGGACGA
CAAGAGCCCCCGGCAACCCCTTCCCGCAGCACCTGGGACATCAAGACATT
CCATGCCTTTGTGAAAGCGCGGACGGGAGGGATGTGTGCCGCTTTGGCGG
GGCCCGCGTCCTCCACATCGTCTCCAACCGTGTATTGGGTGCTGCGAGGC
CAGCTCTCTAATCCTTTCACAGGGGACGTCATTGCAAATGTGCGGGGGTT
GGAGGTGCTCTATCTTTTGGGGTATACCCAGGCGCCAGATATTCCCAAGA
TAAGCAAGTATCAAACACTGGCTATCGCGCCATTGCCACCATCAGTCAGT
CACGCCTTGCCGGGCACACGCAAATGCTTGCATTTACCTGAGCCTCAAGC
CGACAACAGCAATAAGGCCAAGGCTGAAACCAAGGCAAACGCTTCGTCAT
CCGTTTCTAAGAAACAACCGTGGTGTGCGGTCGCCACCACAATCTCAGCC
AAGACGTTTAGGTATTTCGAACCACTCACAAACCAACCCTTACTGACATT
TCGGCCTGGCCCGCGCGCGAAGCCCCGGCAGGTACCCCTCGCTGTAACTA
CAACGCAAGCCGTCAGTTATGTGTTGTCACGCTCTGGTCATCTTCACTTG
GTCGCTGAGAGTGTCACTGGTGGATTGATGGCAGTGCAGGACCAAGGCGC
TGGGCCCGTGTGCAAGGCGAAGCGGAGCAAGTTGTTGTCCTTGTTCTTTC
CAATGCCAGCCCCTAAAACTTTTGAACTTTCCTTGCTCATGTGGCCTGGT
TCGAAGCGAAGCAATCACGGAATGAGCAGTGGCAGCAGCGGCAGCAATGG
GGTGGAGGATGGTGGTGGTGGTGGAGGGGGTTTCCCGTGGGGCTCAATCA
TTCAATTTGGTGCTTCTTCAGCACAACCAGCTTGTCGAGAGCTGTATGCA
CTCAGTACAGAACCGGCATCCAAGCAGCAGGGGCGACGACCACGCATGAA
GTATCTTCGATATGGGGAGGCGCCGCATTGGTGTGGTGCTGGGCGAGTGT
GTCACTTGGCTTTGAAGGGCACCAGATACGATCGCCTGCAGGACATTCCG
CGAGAGGAGCGGCAGCTATTTTTCCCCAACACTAAAAAGGGGTTGGAAGG
GGAGGAGGGAGGATCCCTGCTGGCTGTTTTTCCGCCTGGGTCGGCGCAGG
AATTTTTGGACGAAGCAGAAAGAGTCCGACGGACACAGCGGAAGCGATTT
ATCTTTTTTTAA
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Coding sequence (CDS) from alignment at scaffold_14:402352..403713-

>mRNA_6049 ID=mRNA_6049|Name=jgi.p|Nanoce1779_2|640099|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_14:402352..403713- (Nannochloropsis oceanica)
ATGGCAAGAATACCTTGCCGACGACTGGACTGCTTTCTCCTTCTCCTCCT
TGCTGTTACCCCTTACACTACACCTGCAGCTGTAGCGGTTGCATCTATTC
CCACGCCCTCCTCCCTTCCAGTGCTGCAGTCCCCTCTCAAGAAAGGACGA
CAAGAGCCCCCGGCAACCCCTTCCCGCAGCACCTGGGACATCAAGACATT
CCATGCCTTTGTGAAAGCGCGGACGGGAGGGATGTGTGCCGCTTTGGCGG
GGCCCGCGTCCTCCACATCGTCTCCAACCGTGTATTGGGTGCTGCGAGGC
CAGCTCTCTAATCCTTTCACAGGGGACGTCATTGCAAATGTGCGGGGGTT
GGAGGTGCTCTATCTTTTGGGGTATACCCAGGCGCCAGATATTCCCAAGA
TAAGCAAGTATCAAACACTGGCTATCGCGCCATTGCCACCATCAGTCAGT
CACGCCTTGCCGGGCACACGCAAATGCTTGCATTTACCTGAGCCTCAAGC
CGACAACAGCAATAAGGCCAAGGCTGAAACCAAGGCAAACGCTTCGTCAT
CCGTTTCTAAGAAACAACCGTGGTGTGCGGTCGCCACCACAATCTCAGCC
AAGACGTTTAGGTATTTCGAACCACTCACAAACCAACCCTTACTGACATT
TCGGCCTGGCCCGCGCGCGAAGCCCCGGCAGGTACCCCTCGCTGTAACTA
CAACGCAAGCCGTCAGTTATGTGTTGTCACGCTCTGGTCATCTTCACTTG
GTCGCTGAGAGTGTCACTGGTGGATTGATGGCAGTGCAGGACCAAGGCGC
TGGGCCCGTGTGCAAGGCGAAGCGGAGCAAGTTGTTGTCCTTGTTCTTTC
CAATGCCAGCCCCTAAAACTTTTGAACTTTCCTTGCTCATGTGGCCTGGT
TCGAAGCGAAGCAATCACGGAATGAGCAGTGGCAGCAGCGGCAGCAATGG
GGTGGAGGATGGTGGTGGTGGTGGAGGGGGTTTCCCGTGGGGCTCAATCA
TTCAATTTGGTGCTTCTTCAGCACAACCAGCTTGTCGAGAGCTGTATGCA
CTCAGTACAGAACCGGCATCCAAGCAGCAGGGGCGACGACCACGCATGAA
GTATCTTCGATATGGGGAGGCGCCGCATTGGTGTGGTGCTGGGCGAGTGT
GTCACTTGGCTTTGAAGGGCACCAGATACGATCGCCTGCAGGACATTCCG
CGAGAGGAGCGGCAGCTATTTTTCCCCAACACTAAAAAGGGGTTGGAAGG
GGAGGAGGGAGGATCCCTGCTGGCTGTTTTTCCGCCTGGGTCGGCGCAGG
AATTTTTGGACGAAGCAGAAAGAGTCCGACGGACACAGCGGAAGCGATTT
ATCTTTTTTTAA
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Synonyms
Publications