jgi.p|Nanoce1779_2|80895, mRNA_6048 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|80895
Unique Name	mRNA_6048
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1952
Alignment location	scaffold_14:400300..402251 +

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Properties


Property Name	Value
TranscriptId	80981
Track	FilteredModels2
ProteinId	80895

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:400300..402251 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|80895	gene_6048	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|80895	mRNA_6048-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6048	CDS_6048	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:400300..402251+
coding sequence from alignment at scaffold_14:400300..402251+

mRNA sequence

>mRNA_6048 ID=mRNA_6048|Name=jgi.p|Nanoce1779_2|80895|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp
CTACAACGGCCAGGAGACCGTTTCCGGCGAGTAAGACAGGCACTGAGTGC
ACAAGCAAGATGACTGTCGATGTCATGGAGGTGTTGTCTGCGCTGCCGAG
AGTGTATCGGCCCACCCTGTGTGTACATGACACGACTCTTTTCACTCATG
CATACCACTGTGTACTCGGCCCCAGACCACAGGAGGTCGATGTCCTCACC
ACTGCGGTTCAAAGAGATAGACTAAGGAGAGCCCAAGAACTGCATACGAA
GCGATGAAAATTAATGGTACGCATGACTTCAGCATGCGATGGCAGTACCG
CCCCCTACTCCTCCCTTCCCTTTTCGTCCTCCTATTAACGTCCCATAGCT
ATGGATTCCAGCAACACCAGCTCTTCGTCGCCTTTCGCAACCCTAGCCGC
AACACAATGGGCTTCCGCGTAGGACCGCAAACAAATTATTTATTGCCTCA
GGTTGAATTTCTCTCTGCGTTCAATGCCAGCAACCAGCACACTAGCAGTA
GTAGCAGCATCGCACTTCGACCCTTGACAAGCCAACCCACTATTCCCTTC
TACAGTATTGAGCGCAGCGATGGCGACGATACAACAGACTTCGAATATCA
ACTTGTACGGACGGTGCAGCGCTGTATTCTCGCCTACGGTCTCTTTCAGA
TCTTGGCGAATGGTGAGAGCTTGGCAGCCGCAGCTGCAAATGCTGCTGGT
TTGGATATGCCAATAAGCAGGGATGAAATCCACCCCACCGCCATGTCTTC
TGGGATGGGCAATATAATCAAACTCAAATGGCGAGTCAGTCTGGTAGATT
TGCGAATCGGCAACAATAAAGCGTCCAAATCAACAGACCGCGACTCTGTT
GTCCTTCAAGCCTTTCACCCCTATTTCCACACCGTGGCAAACCTCGACCC
AGCCCTACAGCAACGCGACGAGCGTGGCCCTCCCCCAGACCTGGATTTTG
TCATTTTTCTCCTTCCACGGCAAGATGGAGTGCTCTTGTGTCGACGACTG
ACCAAATGTCCTGCTATTGGAAATGGCTACACCTACGCCTGTACCCCACG
CAGGCCACGGAGTGGTATCCTCAGGCTTTTGGCCGAACGGAGACAAAAAG
CAGTGGTCATCACCCCAACAGCGATGGAACCTGAAATAGCGTGGGCGATG
AATAACTTGGCTAGGGTGCAGGTAGGAAGCAAGGTACTCGACCCCTTTGT
GGGCTCTGGTAGTATCTTATTTGCTGCGAGCCTGCTAGGGGCCCAGGAGT
TAGTAGGGACTGATGCAGCCGTCGAGCTTGTTGGGGAGGGAACGGGGACG
GCGAAACAGGAAATAATGAAGTCGTTTATATATTCAATCGACGAATTCCT
ACCGTGGGTGCCACTATCGGCCAGCGTGAGGCCTGTGCCAAAACTGGGAC
AGGCTGATATGTTGGCGTGGGAAAGCTACCCGCTCTGGTTTCGGCGGGAG
TACTACGACTGTATTGTAACTGACCCTCCATATGACCTAAAGGCTAAAGT
ACAAGGAACGACAACAGGAGCAGCAGGAGCAGCAGGAGCAGCAAAAGAAA
GAGAGACGGATCTGGCGAAGGAGAGGCAGCAAGCTGCTATGCCAGCGATA
AAGAAGCTAATTGAGGTGGCGGATCATGGGCTTGTCCCCGGTGGTCATCT
TGTCTTTTTTTTTCCAGAGTGGGGAAAACATGGTCTTGACGGCAAAGAGG
CTGGATGTGACAGCGTCATCAAGCCTCCTTCTGCGTTTCCGCAGCTCCCT
CCATCCCTTCACCTTGTCGCCATTTTGCCCCAGATTTTCTCGCCCACCTT
CGTCCGTTGGCTTGCGTGCGTGGAGAAGAGAGGACGAATTGCAAGACAAT
GAGAGGCAGTAAAGTACGGATGCACGAACATCGTCGATACCATTAGAATC
CAACACAAAATATGAAGTACCAAGTACATATCTATAGACTCCTATACATT
AT

protein sequence of jgi.p|Nanoce1779_2|80895

>mRNA_6048-protein ID=mRNA_6048-protein|Name=jgi.p|Nanoce1779_2|80895|organism=Nannochloropsis oceanica|type=polypeptide|length=533bp
MKINGTHDFSMRWQYRPLLLPSLFVLLLTSHSYGFQQHQLFVAFRNPSRN
TMGFRVGPQTNYLLPQVEFLSAFNASNQHTSSSSSIALRPLTSQPTIPFY
SIERSDGDDTTDFEYQLVRTVQRCILAYGLFQILANGESLAAAAANAAGL
DMPISRDEIHPTAMSSGMGNIIKLKWRVSLVDLRIGNNKASKSTDRDSVV
LQAFHPYFHTVANLDPALQQRDERGPPPDLDFVIFLLPRQDGVLLCRRLT
KCPAIGNGYTYACTPRRPRSGILRLLAERRQKAVVITPTAMEPEIAWAMN
NLARVQVGSKVLDPFVGSGSILFAASLLGAQELVGTDAAVELVGEGTGTA
KQEIMKSFIYSIDEFLPWVPLSASVRPVPKLGQADMLAWESYPLWFRREY
YDCIVTDPPYDLKAKVQGTTTGAAGAAGAAKERETDLAKERQQAAMPAIK
KLIEVADHGLVPGGHLVFFFPEWGKHGLDGKEAGCDSVIKPPSAFPQLPP
SLHLVAILPQIFSPTFVRWLACVEKRGRIARQ*

mRNA from alignment at scaffold_14:400300..402251+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6048 ID=mRNA_6048|Name=jgi.p|Nanoce1779_2|80895|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at scaffold_14:400300..402251+ (Nannochloropsis oceanica)
CTACAACGGCCAGGAGACCGTTTCCGGCGAGTAAGACAGGCACTGAGTGC
ACAAGCAAGATGACTGTCGATGTCATGGAGGTGTTGTCTGCGCTGCCGAG
AGTGTATCGGCCCACCCTGTGTGTACATGACACGACTCTTTTCACTCATG
CATACCACTGTGTACTCGGCCCCAGACCACAGGAGGTCGATGTCCTCACC
ACTGCGGTTCAAAGAGATAGACTAAGGAGAGCCCAAGAACTGCATACGAA
GCGATGAAAATTAATGGTACGCATGACTTCAGCATGCGATGGCAGTACCG
CCCCCTACTCCTCCCTTCCCTTTTCGTCCTCCTATTAACGTCCCATAGCT
ATGGATTCCAGCAACACCAGCTCTTCGTCGCCTTTCGCAACCCTAGCCGC
AACACAATGGGCTTCCGCGTAGGACCGCAAACAAATTATTTATTGCCTCA
GGTTGAATTTCTCTCTGCGTTCAATGCCAGCAACCAGCACACTAGCAGTA
GTAGCAGCATCGCACTTCGACCCTTGACAAGCCAACCCACTATTCCCTTC
TACAGTATTGAGCGCAGCGATGGCGACGATACAACAGACTTCGAATATCA
ACTTGTACGGACGGTGCAGCGCTGTATTCTCGCCTACGGTCTCTTTCAGA
TCTTGGCGAATGGTGAGAGCTTGGCAGCCGCAGCTGCAAATGCTGCTGGT
TTGGATATGCCAATAAGCAGGGATGAAATCCACCCCACCGCCATGTCTTC
TGGGATGGGCAATATAATCAAACTCAAATGGCGAGTCAGTCTGGTAGATT
TGCGAATCGGCAACAATAAAGCGTCCAAATCAACAGACCGCGACTCTGTT
GTCCTTCAAGCCTTTCACCCCTATTTCCACACCGTGGCAAACCTCGACCC
AGCCCTACAGCAACGCGACGAGCGTGGCCCTCCCCCAGACCTGGATTTTG
TCATTTTTCTCCTTCCACGGCAAGATGGAGTGCTCTTGTGTCGACGACTG
ACCAAATGTCCTGCTATTGGAAATGGCTACACCTACGCCTGTACCCCACG
CAGGCCACGGAGTGGTATCCTCAGGCTTTTGGCCGAACGGAGACAAAAAG
CAGTGGTCATCACCCCAACAGCGATGGAACCTGAAATAGCGTGGGCGATG
AATAACTTGGCTAGGGTGCAGGTAGGAAGCAAGGTACTCGACCCCTTTGT
GGGCTCTGGTAGTATCTTATTTGCTGCGAGCCTGCTAGGGGCCCAGGAGT
TAGTAGGGACTGATGCAGCCGTCGAGCTTGTTGGGGAGGGAACGGGGACG
GCGAAACAGGAAATAATGAAGTCGTTTATATATTCAATCGACGAATTCCT
ACCGTGGGTGCCACTATCGGCCAGCGTGAGGCCTGTGCCAAAACTGGGAC
AGGCTGATATGTTGGCGTGGGAAAGCTACCCGCTCTGGTTTCGGCGGGAG
TACTACGACTGTATTGTAACTGACCCTCCATATGACCTAAAGGCTAAAGT
ACAAGGAACGACAACAGGAGCAGCAGGAGCAGCAGGAGCAGCAAAAGAAA
GAGAGACGGATCTGGCGAAGGAGAGGCAGCAAGCTGCTATGCCAGCGATA
AAGAAGCTAATTGAGGTGGCGGATCATGGGCTTGTCCCCGGTGGTCATCT
TGTCTTTTTTTTTCCAGAGTGGGGAAAACATGGTCTTGACGGCAAAGAGG
CTGGATGTGACAGCGTCATCAAGCCTCCTTCTGCGTTTCCGCAGCTCCCT
CCATCCCTTCACCTTGTCGCCATTTTGCCCCAGATTTTCTCGCCCACCTT
CGTCCGTTGGCTTGCGTGCGTGGAGAAGAGAGGACGAATTGCAAGACAAT
GAGAGGCAGTAAAGTACGGATGCACGAACATCGTCGATACCATTAGAATC
CAACACAAAATATGAAGTACCAAGTACATATCTATAGACTCCTATACATT
AT

Coding sequence (CDS) from alignment at scaffold_14:400300..402251+

>mRNA_6048 ID=mRNA_6048|Name=jgi.p|Nanoce1779_2|80895|organism=Nannochloropsis oceanica|type=CDS|length=1599bp|location=Sequence derived from alignment at scaffold_14:400300..402251+ (Nannochloropsis oceanica)
ATGAAAATTAATGGTACGCATGACTTCAGCATGCGATGGCAGTACCGCCC
CCTACTCCTCCCTTCCCTTTTCGTCCTCCTATTAACGTCCCATAGCTATG
GATTCCAGCAACACCAGCTCTTCGTCGCCTTTCGCAACCCTAGCCGCAAC
ACAATGGGCTTCCGCGTAGGACCGCAAACAAATTATTTATTGCCTCAGGT
TGAATTTCTCTCTGCGTTCAATGCCAGCAACCAGCACACTAGCAGTAGTA
GCAGCATCGCACTTCGACCCTTGACAAGCCAACCCACTATTCCCTTCTAC
AGTATTGAGCGCAGCGATGGCGACGATACAACAGACTTCGAATATCAACT
TGTACGGACGGTGCAGCGCTGTATTCTCGCCTACGGTCTCTTTCAGATCT
TGGCGAATGGTGAGAGCTTGGCAGCCGCAGCTGCAAATGCTGCTGGTTTG
GATATGCCAATAAGCAGGGATGAAATCCACCCCACCGCCATGTCTTCTGG
GATGGGCAATATAATCAAACTCAAATGGCGAGTCAGTCTGGTAGATTTGC
GAATCGGCAACAATAAAGCGTCCAAATCAACAGACCGCGACTCTGTTGTC
CTTCAAGCCTTTCACCCCTATTTCCACACCGTGGCAAACCTCGACCCAGC
CCTACAGCAACGCGACGAGCGTGGCCCTCCCCCAGACCTGGATTTTGTCA
TTTTTCTCCTTCCACGGCAAGATGGAGTGCTCTTGTGTCGACGACTGACC
AAATGTCCTGCTATTGGAAATGGCTACACCTACGCCTGTACCCCACGCAG
GCCACGGAGTGGTATCCTCAGGCTTTTGGCCGAACGGAGACAAAAAGCAG
TGGTCATCACCCCAACAGCGATGGAACCTGAAATAGCGTGGGCGATGAAT
AACTTGGCTAGGGTGCAGGTAGGAAGCAAGGTACTCGACCCCTTTGTGGG
CTCTGGTAGTATCTTATTTGCTGCGAGCCTGCTAGGGGCCCAGGAGTTAG
TAGGGACTGATGCAGCCGTCGAGCTTGTTGGGGAGGGAACGGGGACGGCG
AAACAGGAAATAATGAAGTCGTTTATATATTCAATCGACGAATTCCTACC
GTGGGTGCCACTATCGGCCAGCGTGAGGCCTGTGCCAAAACTGGGACAGG
CTGATATGTTGGCGTGGGAAAGCTACCCGCTCTGGTTTCGGCGGGAGTAC
TACGACTGTATTGTAACTGACCCTCCATATGACCTAAAGGCTAAAGTACA
AGGAACGACAACAGGAGCAGCAGGAGCAGCAGGAGCAGCAAAAGAAAGAG
AGACGGATCTGGCGAAGGAGAGGCAGCAAGCTGCTATGCCAGCGATAAAG
AAGCTAATTGAGGTGGCGGATCATGGGCTTGTCCCCGGTGGTCATCTTGT
CTTTTTTTTTCCAGAGTGGGGAAAACATGGTCTTGACGGCAAAGAGGCTG
GATGTGACAGCGTCATCAAGCCTCCTTCTGCGTTTCCGCAGCTCCCTCCA
TCCCTTCACCTTGTCGCCATTTTGCCCCAGATTTTCTCGCCCACCTTCGT
CCGTTGGCTTGCGTGCGTGGAGAAGAGAGGACGAATTGCAAGACAATGA

Synonyms

Publications