jgi.p|Nanoce1779_2|671713, mRNA_6045 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671713
Unique NamemRNA_6045
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2215
Alignment locationscaffold_14:394346..396560 -

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Properties
Property NameValue
TranscriptId671799
TrackFilteredModels2
ProteinId671713
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:394346..396560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671713gene_6045Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671713mRNA_6045-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6045CDS_6045Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6045 ID=mRNA_6045|Name=jgi.p|Nanoce1779_2|671713|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp
CGCTGCCTTCTTGGCCTTTGGTCCCGGCCGCTAATCTATTTGCTACCACT
ATAAAATACAGTGATTTATCCAGTCCTCGTCTATTATCCTGTGATGCCGC
AGGGCTGTCGGCTACTACCACCACCATAATGCCCCACCGCTGATGGAGGA
AGCCGACACGGCCCACCTGCGCTCTTTGGCAGCCCTTGCCCCTGCCGTCT
TTTTCCCTCCTGAACGATGTGACCGACAGAAAAACCACGAAGCGAATTTG
TGTCGGCTGGTTCGTTCAGAAGATCCACTGATAAGTCATGTGGCCACTGG
AATTCTGCTCAAGGGATTGCGGGATGCCAAGCCGGGTTCGTCGAAAGGAT
GCTTGACCGAGGTCTTGAGTCCCTACACTCCGAGTCACGGCCGGGTCAAT
ATCGAGCGACATCGCCTCACCAATACACTAGAAGCCTGTCGTCGTTTGGT
GGAGGAGGTGTGCTGTCCAGAGATAGACCCGGAGCTAAGGCATGACGAGA
AAGAGAACGGAGTCGACGGCGATTACTTGTGCCATACAAAAGACATGAAG
GCAACAAAAGTGTACATCCGACAGGTGGTCGCGCGGGCCTTGCCCGGTTG
GCAAGAAGCAGCTTTGCAATCGTATGTTGTTTCTGCGGCGGCTGCGCGAG
GAATCGATGCAGAGGAGGGCGAGGACGTGGAGTTTCCCCTCATTTGGGTC
ACCTCGTTGGGCTTAGTCCTTCGACGGAGCTACCACGAACCCGAAGAAGA
AGACGAGGACGACGTGGAAAAGGAGAAAGAAAAGCAATGTTTAGCAAAAA
TGCTGCTGGCTTGGTGTCAGACTTGTTGGCGTGTTATTGAGCGAGTGGGT
ATAGGAGGGGTAGAGGCTCGACGACAGGTTCTCGAATTGGCCTTGGCGCT
TCTGCGGGAGGCGGAAGGTGACGCGCAAGATGATGGCGAAGAAGAGAGAT
GTCGACGAAAGGCAGAGAAAAATGTTATCGAGGGATTGATTGCATTGGTG
CGCTGTGCTATCACCAAGTCAAATTCGATCAAAAAGCGCCACCGCAGCAA
CCTCAACACCGAAGAAGAATGGGATGAAGAGGTGGCTGTAACACCGACGC
CTCCAGTGGCGACTCCGCCGTGCCCCCTTCTCCTGCCCCTTCAGGCACAC
AATTTATTCAATACTCATATGGCATTGTGGAGCAAGCTAGCCAAGCTGAT
AATCCAGCGACGGAATGCCACTGATGTTGATGCTGGTGTTGGTGTTGGTG
CTGTTGCCGTTGCTGCGGCGGAATCGTCTTGCTTCTCCTCTTCCCCCTCC
TGTTCCTCCTCTTCATCGGTAGAGAGGTGGGAGACTCTCTTTCTGTGCTT
GTTGCAGAGCCCTATTTGTGAGGCACATTTCGGGATCCAACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGAAAA
AGAAGAAAAAGAAGAAGAAGAGCAAGATAGCCGATTAAGACTCCTGCTTG
TCGAGAAACTGGTAGAGGATGATAATAGGCTTATAGGTGTCTTAAAGGAC
CTGCTCCTCGTCAACTGGGGGCTTCGGATGCACACACTTTCTTCTGATGA
AGGACAGCGGCTTCTCCCGCCTTTCCTGGCGGGTTCGGACCCTGCCGTGC
TACTGTGTACTCTACTAGAGAAATTGCCCGATGGAAGTGCGGAGCAATTA
TTTTTGGATTTCCTTTTATCGAATGAGACGTGTGCTTTGGAGTACCTTGT
CAGGATAACGAAGTATACTGTGTGGCAACAACAACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCGAATGGTTCAT
TCCTTCTTACAGCGACTGAGCCAGCGTCTTGAGTCGTTGGCCTCCAGGCG
GCTTCTTCCTTTTGACCCTTCTGCTCTTCTGGTACGCTTGCGGTCGCTCC
AGGCACCGTGGCACGTGGATGCGTGAGCCGACAGAAAGGCATGGAAGTTT
GTAGATTAATTAAAAGCTTGTATACAGCCAAGGTCGGTAGAATGTAATGG
AGAAGAGGGAAAGGAAAGCGATGGATGGAGTGTGTGGGTGCCAACACTTT
ATTACCACAAGAAGCAGAAGCAATTTTATTCGAGAAGGCGGTAGGCTCGT
AGGATTGGGTTTGCG
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protein sequence of jgi.p|Nanoce1779_2|671713

>mRNA_6045-protein ID=mRNA_6045-protein|Name=jgi.p|Nanoce1779_2|671713|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MEEADTAHLRSLAALAPAVFFPPERCDRQKNHEANLCRLVRSEDPLISHV
ATGILLKGLRDAKPGSSKGCLTEVLSPYTPSHGRVNIERHRLTNTLEACR
RLVEEVCCPEIDPELRHDEKENGVDGDYLCHTKDMKATKVYIRQVVARAL
PGWQEAALQSYVVSAAAARGIDAEEGEDVEFPLIWVTSLGLVLRRSYHEP
EEEDEDDVEKEKEKQCLAKMLLAWCQTCWRVIERVGIGGVEARRQVLELA
LALLREAEGDAQDDGEEERCRRKAEKNVIEGLIALVRCAITKSNSIKKRH
RSNLNTEEEWDEEVAVTPTPPVATPPCPLLLPLQAHNLFNTHMALWSKLA
KLIIQRRNATDVDAGVGVGAVAVAAAESSCFSSSPSCSSSSSVERWETLF
LCLLQSPICEAHFGIQRGGGGGGGGGGGGGGEGGEGGGGGGGGGGGGGAG
GEKEEKEEEEQDSRLRLLLVEKLVEDDNRLIGVLKDLLLVNWGLRMHTLS
SDEGQRLLPPFLAGSDPAVLLCTLLEKLPDGSAEQLFLDFLLSNETCALE
YLVRITKYTVWQQQQQQQQQQQQQQQQQQQQQRMVHSFLQRLSQRLESLA
SRRLLPFDPSALLVRLRSLQAPWHVDA*
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mRNA from alignment at scaffold_14:394346..396560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6045 ID=mRNA_6045|Name=jgi.p|Nanoce1779_2|671713|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp|location=Sequence derived from alignment at scaffold_14:394346..396560- (Nannochloropsis oceanica)
CGCTGCCTTCTTGGCCTTTGGTCCCGGCCGCTAATCTATTTGCTACCACT
ATAAAATACAGTGATTTATCCAGTCCTCGTCTATTATCCTGTGATGCCGC
AGGGCTGTCGGCTACTACCACCACCATAATGCCCCACCGCTGATGGAGGA
AGCCGACACGGCCCACCTGCGCTCTTTGGCAGCCCTTGCCCCTGCCGTCT
TTTTCCCTCCTGAACGATGTGACCGACAGAAAAACCACGAAGCGAATTTG
TGTCGGCTGGTTCGTTCAGAAGATCCACTGATAAGTCATGTGGCCACTGG
AATTCTGCTCAAGGGATTGCGGGATGCCAAGCCGGGTTCGTCGAAAGGAT
GCTTGACCGAGGTCTTGAGTCCCTACACTCCGAGTCACGGCCGGGTCAAT
ATCGAGCGACATCGCCTCACCAATACACTAGAAGCCTGTCGTCGTTTGGT
GGAGGAGGTGTGCTGTCCAGAGATAGACCCGGAGCTAAGGCATGACGAGA
AAGAGAACGGAGTCGACGGCGATTACTTGTGCCATACAAAAGACATGAAG
GCAACAAAAGTGTACATCCGACAGGTGGTCGCGCGGGCCTTGCCCGGTTG
GCAAGAAGCAGCTTTGCAATCGTATGTTGTTTCTGCGGCGGCTGCGCGAG
GAATCGATGCAGAGGAGGGCGAGGACGTGGAGTTTCCCCTCATTTGGGTC
ACCTCGTTGGGCTTAGTCCTTCGACGGAGCTACCACGAACCCGAAGAAGA
AGACGAGGACGACGTGGAAAAGGAGAAAGAAAAGCAATGTTTAGCAAAAA
TGCTGCTGGCTTGGTGTCAGACTTGTTGGCGTGTTATTGAGCGAGTGGGT
ATAGGAGGGGTAGAGGCTCGACGACAGGTTCTCGAATTGGCCTTGGCGCT
TCTGCGGGAGGCGGAAGGTGACGCGCAAGATGATGGCGAAGAAGAGAGAT
GTCGACGAAAGGCAGAGAAAAATGTTATCGAGGGATTGATTGCATTGGTG
CGCTGTGCTATCACCAAGTCAAATTCGATCAAAAAGCGCCACCGCAGCAA
CCTCAACACCGAAGAAGAATGGGATGAAGAGGTGGCTGTAACACCGACGC
CTCCAGTGGCGACTCCGCCGTGCCCCCTTCTCCTGCCCCTTCAGGCACAC
AATTTATTCAATACTCATATGGCATTGTGGAGCAAGCTAGCCAAGCTGAT
AATCCAGCGACGGAATGCCACTGATGTTGATGCTGGTGTTGGTGTTGGTG
CTGTTGCCGTTGCTGCGGCGGAATCGTCTTGCTTCTCCTCTTCCCCCTCC
TGTTCCTCCTCTTCATCGGTAGAGAGGTGGGAGACTCTCTTTCTGTGCTT
GTTGCAGAGCCCTATTTGTGAGGCACATTTCGGGATCCAACGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGAAAA
AGAAGAAAAAGAAGAAGAAGAGCAAGATAGCCGATTAAGACTCCTGCTTG
TCGAGAAACTGGTAGAGGATGATAATAGGCTTATAGGTGTCTTAAAGGAC
CTGCTCCTCGTCAACTGGGGGCTTCGGATGCACACACTTTCTTCTGATGA
AGGACAGCGGCTTCTCCCGCCTTTCCTGGCGGGTTCGGACCCTGCCGTGC
TACTGTGTACTCTACTAGAGAAATTGCCCGATGGAAGTGCGGAGCAATTA
TTTTTGGATTTCCTTTTATCGAATGAGACGTGTGCTTTGGAGTACCTTGT
CAGGATAACGAAGTATACTGTGTGGCAACAACAACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCGAATGGTTCAT
TCCTTCTTACAGCGACTGAGCCAGCGTCTTGAGTCGTTGGCCTCCAGGCG
GCTTCTTCCTTTTGACCCTTCTGCTCTTCTGGTACGCTTGCGGTCGCTCC
AGGCACCGTGGCACGTGGATGCGTGAGCCGACAGAAAGGCATGGAAGTTT
GTAGATTAATTAAAAGCTTGTATACAGCCAAGGTCGGTAGAATGTAATGG
AGAAGAGGGAAAGGAAAGCGATGGATGGAGTGTGTGGGTGCCAACACTTT
ATTACCACAAGAAGCAGAAGCAATTTTATTCGAGAAGGCGGTAGGCTCGT
AGGATTGGGTTTGCG
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Coding sequence (CDS) from alignment at scaffold_14:394346..396560-

>mRNA_6045 ID=mRNA_6045|Name=jgi.p|Nanoce1779_2|671713|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_14:394346..396560- (Nannochloropsis oceanica)
ATGGAGGAAGCCGACACGGCCCACCTGCGCTCTTTGGCAGCCCTTGCCCC
TGCCGTCTTTTTCCCTCCTGAACGATGTGACCGACAGAAAAACCACGAAG
CGAATTTGTGTCGGCTGGTTCGTTCAGAAGATCCACTGATAAGTCATGTG
GCCACTGGAATTCTGCTCAAGGGATTGCGGGATGCCAAGCCGGGTTCGTC
GAAAGGATGCTTGACCGAGGTCTTGAGTCCCTACACTCCGAGTCACGGCC
GGGTCAATATCGAGCGACATCGCCTCACCAATACACTAGAAGCCTGTCGT
CGTTTGGTGGAGGAGGTGTGCTGTCCAGAGATAGACCCGGAGCTAAGGCA
TGACGAGAAAGAGAACGGAGTCGACGGCGATTACTTGTGCCATACAAAAG
ACATGAAGGCAACAAAAGTGTACATCCGACAGGTGGTCGCGCGGGCCTTG
CCCGGTTGGCAAGAAGCAGCTTTGCAATCGTATGTTGTTTCTGCGGCGGC
TGCGCGAGGAATCGATGCAGAGGAGGGCGAGGACGTGGAGTTTCCCCTCA
TTTGGGTCACCTCGTTGGGCTTAGTCCTTCGACGGAGCTACCACGAACCC
GAAGAAGAAGACGAGGACGACGTGGAAAAGGAGAAAGAAAAGCAATGTTT
AGCAAAAATGCTGCTGGCTTGGTGTCAGACTTGTTGGCGTGTTATTGAGC
GAGTGGGTATAGGAGGGGTAGAGGCTCGACGACAGGTTCTCGAATTGGCC
TTGGCGCTTCTGCGGGAGGCGGAAGGTGACGCGCAAGATGATGGCGAAGA
AGAGAGATGTCGACGAAAGGCAGAGAAAAATGTTATCGAGGGATTGATTG
CATTGGTGCGCTGTGCTATCACCAAGTCAAATTCGATCAAAAAGCGCCAC
CGCAGCAACCTCAACACCGAAGAAGAATGGGATGAAGAGGTGGCTGTAAC
ACCGACGCCTCCAGTGGCGACTCCGCCGTGCCCCCTTCTCCTGCCCCTTC
AGGCACACAATTTATTCAATACTCATATGGCATTGTGGAGCAAGCTAGCC
AAGCTGATAATCCAGCGACGGAATGCCACTGATGTTGATGCTGGTGTTGG
TGTTGGTGCTGTTGCCGTTGCTGCGGCGGAATCGTCTTGCTTCTCCTCTT
CCCCCTCCTGTTCCTCCTCTTCATCGGTAGAGAGGTGGGAGACTCTCTTT
CTGTGCTTGTTGCAGAGCCCTATTTGTGAGGCACATTTCGGGATCCAACG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGA
GGAGAAAAAGAAGAAAAAGAAGAAGAAGAGCAAGATAGCCGATTAAGACT
CCTGCTTGTCGAGAAACTGGTAGAGGATGATAATAGGCTTATAGGTGTCT
TAAAGGACCTGCTCCTCGTCAACTGGGGGCTTCGGATGCACACACTTTCT
TCTGATGAAGGACAGCGGCTTCTCCCGCCTTTCCTGGCGGGTTCGGACCC
TGCCGTGCTACTGTGTACTCTACTAGAGAAATTGCCCGATGGAAGTGCGG
AGCAATTATTTTTGGATTTCCTTTTATCGAATGAGACGTGTGCTTTGGAG
TACCTTGTCAGGATAACGAAGTATACTGTGTGGCAACAACAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCGAA
TGGTTCATTCCTTCTTACAGCGACTGAGCCAGCGTCTTGAGTCGTTGGCC
TCCAGGCGGCTTCTTCCTTTTGACCCTTCTGCTCTTCTGGTACGCTTGCG
GTCGCTCCAGGCACCGTGGCACGTGGATGCGTGA
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Synonyms
Publications