jgi.p|Nanoce1779_2|566855, mRNA_6044 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|566855
Unique Name	mRNA_6044
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1269
Alignment location	scaffold_14:392925..394193 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	566941
Track	FilteredModels2
ProteinId	566855

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:392925..394193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566855	gene_6044	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566855	mRNA_6044-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6044	CDS_6044	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:392925..394193+
coding sequence from alignment at scaffold_14:392925..394193+

mRNA sequence

>mRNA_6044 ID=mRNA_6044|Name=jgi.p|Nanoce1779_2|566855|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
ATGACCACGACGGCTAGCAGCTCACAAGATACATGTACCTTCTTTCAACC
CGATAATATTGCACTCAGCATGAATCCCGTCGTGCTGTTGGCTACGCAGC
GTATCCGTGAATTCACGGCCGGTTTTTTGGAGCAGAACCGGGCGGTGGTC
TTAGTCACCTCCGGCGGGACCTCGGTTCCCTTGGAACGCAACACAGTGCG
CTCCGTCGAGAATTTCAGTACGGGCAAGCGCGGGGCAACCTCGGCTGAGT
ACTTTTTGAAGCTGGGTTACGTTGTGATTTTCTTGCATCGTCCCGGAACG
GCCTGTCCTTTCGCCCGCTGCTTCCAGGCAGAGGTAGCGGAGCACGTGGA
CGGGACCTTGCTAGATGCCTTGTGGGTGCGGGAAAAAACAGGTGCTTTGG
TCCTAGACGTAAAGCGTGGGGCGGCAAATATTTTGCAGGGGGCACTGGAG
GGATATCAAGAAGCAAGGGAAGAAGGGACGTTGTTGCTGGTGACTTACGA
GACCGTGACAGACTACCTCCTCATCCTCCAAGCCGCCGCCCGAGCTTTGG
CTCCCTTTCGGCAAAACGCAATGTTTTTCCTGGCGTGTGCCGTGAGTGAT
TTCTATATTCCTGCCGCCGAGATGGCCGAGCATAAGATTCAGTCCTCCAT
TGAGCATCGACGCAAGCAGCAGCAGCAAGGAGGGAAGGAGGATGAGAAAC
AAGAAGGGCTAATCTTGCGGCTGCACGCTGTTCCTAAATGCCTACCCTTA
CTTCGTCATGAGTGGGCCCCGCATGCGTTCGTCGTCTCCTTCAAACTCGA
GACCGATCCCGACATTCTTCTCGAAAAAGCACAAGAGGCCGTGGCTCGCT
ACGGTGTTCACCTTGTAATTGCCAACTTACTACACACTCGCTATAAGGAA
GTCCAACTCGTGGCCGGGGCCGAAGCACCAATGGAGGGGGGGGAGAAAGG
CACTGAGCAGACCGATGTCCTTTCTACTCCTGGATTTCACGTGCAGCATG
TAGTCATGGATCCTGCGCAGAAGGACCTGGAAGCCCGCTTTGTCCCTCTC
GTCGCACAAGCCCACTTTACCTTTATTTCCCGGAGTGACCAGCCCTACGG
CCTACCTCCCCCTCCACTCAAGGCATTGCCGACCCCTTCATTGCTGCAGC
GGCTGCGTAGTGTGGACCTGGCGGACATTTTTATGGCGTTAATTCTAGGC
CCTGGTATGGTGGTGTTGTCGGTGGCGTTGCAGAGGAAGTTGCTTGAAAA
GATAGGGGAGAGGAAGTAG

protein sequence of jgi.p|Nanoce1779_2|566855

>mRNA_6044-protein ID=mRNA_6044-protein|Name=jgi.p|Nanoce1779_2|566855|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MTTTASSSQDTCTFFQPDNIALSMNPVVLLATQRIREFTAGFLEQNRAVV
LVTSGGTSVPLERNTVRSVENFSTGKRGATSAEYFLKLGYVVIFLHRPGT
ACPFARCFQAEVAEHVDGTLLDALWVREKTGALVLDVKRGAANILQGALE
GYQEAREEGTLLLVTYETVTDYLLILQAAARALAPFRQNAMFFLACAVSD
FYIPAAEMAEHKIQSSIEHRRKQQQQGGKEDEKQEGLILRLHAVPKCLPL
LRHEWAPHAFVVSFKLETDPDILLEKAQEAVARYGVHLVIANLLHTRYKE
VQLVAGAEAPMEGGEKGTEQTDVLSTPGFHVQHVVMDPAQKDLEARFVPL
VAQAHFTFISRSDQPYGLPPPPLKALPTPSLLQRLRSVDLADIFMALILG
PGMVVLSVALQRKLLEKIGERK*

mRNA from alignment at scaffold_14:392925..394193+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6044 ID=mRNA_6044|Name=jgi.p|Nanoce1779_2|566855|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at scaffold_14:392925..394193+ (Nannochloropsis oceanica)
ATGACCACGACGGCTAGCAGCTCACAAGATACATGTACCTTCTTTCAACC
CGATAATATTGCACTCAGCATGAATCCCGTCGTGCTGTTGGCTACGCAGC
GTATCCGTGAATTCACGGCCGGTTTTTTGGAGCAGAACCGGGCGGTGGTC
TTAGTCACCTCCGGCGGGACCTCGGTTCCCTTGGAACGCAACACAGTGCG
CTCCGTCGAGAATTTCAGTACGGGCAAGCGCGGGGCAACCTCGGCTGAGT
ACTTTTTGAAGCTGGGTTACGTTGTGATTTTCTTGCATCGTCCCGGAACG
GCCTGTCCTTTCGCCCGCTGCTTCCAGGCAGAGGTAGCGGAGCACGTGGA
CGGGACCTTGCTAGATGCCTTGTGGGTGCGGGAAAAAACAGGTGCTTTGG
TCCTAGACGTAAAGCGTGGGGCGGCAAATATTTTGCAGGGGGCACTGGAG
GGATATCAAGAAGCAAGGGAAGAAGGGACGTTGTTGCTGGTGACTTACGA
GACCGTGACAGACTACCTCCTCATCCTCCAAGCCGCCGCCCGAGCTTTGG
CTCCCTTTCGGCAAAACGCAATGTTTTTCCTGGCGTGTGCCGTGAGTGAT
TTCTATATTCCTGCCGCCGAGATGGCCGAGCATAAGATTCAGTCCTCCAT
TGAGCATCGACGCAAGCAGCAGCAGCAAGGAGGGAAGGAGGATGAGAAAC
AAGAAGGGCTAATCTTGCGGCTGCACGCTGTTCCTAAATGCCTACCCTTA
CTTCGTCATGAGTGGGCCCCGCATGCGTTCGTCGTCTCCTTCAAACTCGA
GACCGATCCCGACATTCTTCTCGAAAAAGCACAAGAGGCCGTGGCTCGCT
ACGGTGTTCACCTTGTAATTGCCAACTTACTACACACTCGCTATAAGGAA
GTCCAACTCGTGGCCGGGGCCGAAGCACCAATGGAGGGGGGGGAGAAAGG
CACTGAGCAGACCGATGTCCTTTCTACTCCTGGATTTCACGTGCAGCATG
TAGTCATGGATCCTGCGCAGAAGGACCTGGAAGCCCGCTTTGTCCCTCTC
GTCGCACAAGCCCACTTTACCTTTATTTCCCGGAGTGACCAGCCCTACGG
CCTACCTCCCCCTCCACTCAAGGCATTGCCGACCCCTTCATTGCTGCAGC
GGCTGCGTAGTGTGGACCTGGCGGACATTTTTATGGCGTTAATTCTAGGC
CCTGGTATGGTGGTGTTGTCGGTGGCGTTGCAGAGGAAGTTGCTTGAAAA
GATAGGGGAGAGGAAGTAG

Coding sequence (CDS) from alignment at scaffold_14:392925..394193+

>mRNA_6044 ID=mRNA_6044|Name=jgi.p|Nanoce1779_2|566855|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_14:392925..394193+ (Nannochloropsis oceanica)
ATGACCACGACGGCTAGCAGCTCACAAGATACATGTACCTTCTTTCAACC
CGATAATATTGCACTCAGCATGAATCCCGTCGTGCTGTTGGCTACGCAGC
GTATCCGTGAATTCACGGCCGGTTTTTTGGAGCAGAACCGGGCGGTGGTC
TTAGTCACCTCCGGCGGGACCTCGGTTCCCTTGGAACGCAACACAGTGCG
CTCCGTCGAGAATTTCAGTACGGGCAAGCGCGGGGCAACCTCGGCTGAGT
ACTTTTTGAAGCTGGGTTACGTTGTGATTTTCTTGCATCGTCCCGGAACG
GCCTGTCCTTTCGCCCGCTGCTTCCAGGCAGAGGTAGCGGAGCACGTGGA
CGGGACCTTGCTAGATGCCTTGTGGGTGCGGGAAAAAACAGGTGCTTTGG
TCCTAGACGTAAAGCGTGGGGCGGCAAATATTTTGCAGGGGGCACTGGAG
GGATATCAAGAAGCAAGGGAAGAAGGGACGTTGTTGCTGGTGACTTACGA
GACCGTGACAGACTACCTCCTCATCCTCCAAGCCGCCGCCCGAGCTTTGG
CTCCCTTTCGGCAAAACGCAATGTTTTTCCTGGCGTGTGCCGTGAGTGAT
TTCTATATTCCTGCCGCCGAGATGGCCGAGCATAAGATTCAGTCCTCCAT
TGAGCATCGACGCAAGCAGCAGCAGCAAGGAGGGAAGGAGGATGAGAAAC
AAGAAGGGCTAATCTTGCGGCTGCACGCTGTTCCTAAATGCCTACCCTTA
CTTCGTCATGAGTGGGCCCCGCATGCGTTCGTCGTCTCCTTCAAACTCGA
GACCGATCCCGACATTCTTCTCGAAAAAGCACAAGAGGCCGTGGCTCGCT
ACGGTGTTCACCTTGTAATTGCCAACTTACTACACACTCGCTATAAGGAA
GTCCAACTCGTGGCCGGGGCCGAAGCACCAATGGAGGGGGGGGAGAAAGG
CACTGAGCAGACCGATGTCCTTTCTACTCCTGGATTTCACGTGCAGCATG
TAGTCATGGATCCTGCGCAGAAGGACCTGGAAGCCCGCTTTGTCCCTCTC
GTCGCACAAGCCCACTTTACCTTTATTTCCCGGAGTGACCAGCCCTACGG
CCTACCTCCCCCTCCACTCAAGGCATTGCCGACCCCTTCATTGCTGCAGC
GGCTGCGTAGTGTGGACCTGGCGGACATTTTTATGGCGTTAATTCTAGGC
CCTGGTATGGTGGTGTTGTCGGTGGCGTTGCAGAGGAAGTTGCTTGAAAA
GATAGGGGAGAGGAAGTAG

Synonyms

Publications