jgi.p|Nanoce1779_2|593578, mRNA_6043 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593578
Unique NamemRNA_6043
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length959
Alignment locationscaffold_14:391485..392679 -

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Properties
Property NameValue
TranscriptId593664
TrackFilteredModels2
ProteinId593578
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:391485..392679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593578gene_6043Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593578mRNA_6043-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6043CDS_6043Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6043 ID=mRNA_6043|Name=jgi.p|Nanoce1779_2|593578|organism=Nannochloropsis oceanica|type=mRNA|length=959bp
ATGATACTTTGTGCCGCAAAACGCGAGGTCGCCAGAGAGCATCTTATATG
CGCTCATGTGTTAGGTGCATCGCGTCCACCACCCACCTAATAGACACATG
CTGGACGGCATCGACGAGCCCTGCGTGGGCAACACATGTTCCTTGTTGCA
AGACGTGCGTGCGCATGGCCGCTGGATCAGAGCCAATTGGGTGCATTGGC
AGGCAACGCGGGTGTTTTGGGGCCTGCAAGAAGCGATGGCCTCACTAATG
CAACTGCTCCGTCTATACTTTCATACAAACCACACTTAGACCCCTCCTAA
CTTAGCTATGTCGACGCTTGAGGTCAGCGACCTGCCTGTGCCCGCCAAGG
ATGAGCGCTTCCCGACCATTAACCAGGCCCTGAACTGCTGGAACAAATAC
AACGAGTGGGTGCTGTGCCTAAAGAACAACGAGAAGGATGAGGCCAAATG
CTTTTTACCTCGTTTTAATATGCGTGAGCTTTGTCCAGGGGAGTGGGTGG
AGAAATGGGATGCGGATCGCGACGGAGACAAGTTCGCCGGTCTCCAGGTG
GACGATGCTGAGCATTAAGCGTCTCGGGTGTGGTAGCGCTAGATAGAGAA
TATTCGTGCGTTATTTCTCAGCTTGGTCCTTGTATTTCCTATTTAGCGAT
GGACTGGTGGGGTCGTGATGCATGAGTATTAGCGACGTGGATGTTTTTTT
GTAGGAAGGAAGAAGCGAGGGGAAAGACATGGGGCGAGGCTACAAGGACG
AGTACAGGGAATATGGGACACTTGCCTCCTACTTTCGTCGTACGGCTATG
TGTATGGGTTGGTTCTGTTGATATGCCGCGCTGCATTAGGGTGGGTATCC
CTGGGAACGGCTCTTCGTCCGTGCGTTCTTTGTGTCGCGTTGTCAAGCAG
GAAAAAGAAAAGGTACCAAAAAAGGCATTGATGAAATGCAAAAACCACCA
TTCAGCTCG
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protein sequence of jgi.p|Nanoce1779_2|593578

>mRNA_6043-protein ID=mRNA_6043-protein|Name=jgi.p|Nanoce1779_2|593578|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSTLEVSDLPVPAKDERFPTINQALNCWNKYNEWVLCLKNNEKDEAKCFL
PRFNMRELCPGEWVEKWDADRDGDKFAGLQVDDAEH*
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mRNA from alignment at scaffold_14:391485..392679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6043 ID=mRNA_6043|Name=jgi.p|Nanoce1779_2|593578|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp|location=Sequence derived from alignment at scaffold_14:391485..392679- (Nannochloropsis oceanica)
ATGATACTTTGTGCCGCAAAACGCGAGGTCGCCAGAGAGCATCTTATATG
CGCTCATGTGTTAGGTGCATCGCGTCCACCACCCACCTAATAGACACATG
CTGGACGGCATCGACGAGCCCTGCGTGGGCAACACATGTTCCTTGTTGCA
AGACGTGCGTGCGCATGGCCGCTGGATCAGAGCCAATTGGGTGCATTGGC
AGGCAACGCGGGTGTTTTGGGGCCTGCAAGAAGCGATGGCCTCACTAATG
CAACTGCTCCGTCTATACTTTCATACAAACCACACTTAGACCCCTCCTAA
CTTAGCTATGTCGACGCTTGAGGTCAGCGACCTGCCTGTGCCCGCCAAGG
ATGAGCGCTTCCCGACCATTAACCAGGCCCTGAACTGCTGGTAAGTGTAA
ATGTGGAGAGCCAAGGGGAAGAGCAGGGGATTTGCCTTGCGTTGGGCACG
TCATATCTGCCCAGTGTACTTCGTGGCAGGGAAAGACTCGCCCGCTTTCC
GCATGTACAAATGCTCTCCAGTTGTCTATCTCTTCTTGGTGCTCTCATTT
ATTTTCTCTTTGCGGTAACAGTGCCAGTGTATGACCCATCTGGACTCACA
CCTCTCCTTTTCTCTCTCACGTCCAGGAACAAATACAACGAGTGGGTGCT
GTGCCTAAAGAACAACGAGAAGGATGAGGCCAAATGCTTTTTACCTCGTT
TTAATATGCGTGAGCTTTGTCCAGGGGAGTGGGTGGAGAAATGGGATGCG
GATCGCGACGGAGACAAGTTCGCCGGTCTCCAGGTGGACGATGCTGAGCA
TTAAGCGTCTCGGGTGTGGTAGCGCTAGATAGAGAATATTCGTGCGTTAT
TTCTCAGCTTGGTCCTTGTATTTCCTATTTAGCGATGGACTGGTGGGGTC
GTGATGCATGAGTATTAGCGACGTGGATGTTTTTTTGTAGGAAGGAAGAA
GCGAGGGGAAAGACATGGGGCGAGGCTACAAGGACGAGTACAGGGAATAT
GGGACACTTGCCTCCTACTTTCGTCGTACGGCTATGTGTATGGGTTGGTT
CTGTTGATATGCCGCGCTGCATTAGGGTGGGTATCCCTGGGAACGGCTCT
TCGTCCGTGCGTTCTTTGTGTCGCGTTGTCAAGCAGGAAAAAGAAAAGGT
ACCAAAAAAGGCATTGATGAAATGCAAAAACCACCATTCAGCTCG
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Coding sequence (CDS) from alignment at scaffold_14:391485..392679-

>mRNA_6043 ID=mRNA_6043|Name=jgi.p|Nanoce1779_2|593578|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_14:391485..392679- (Nannochloropsis oceanica)
GAACAAATACAACGAGTGGGTGCTGTGCCTAAAGAACAACGAGAAGGATG
AGGCCAAATGCTTTTTACCTCGTTTTAATATGCGTGAGCTTTGTCCAGGG
GAGTGGGTGGAGAAATGGGATGCGGATCGCGACGGAGACAAGTTCGCCGG
TCTCCAGGTGGACGATGCTGAGCATTAAATGTCGACGCTTGAGGTCAGCG
ACCTGCCTGTGCCCGCCAAGGATGAGCGCTTCCCGACCATTAACCAGGCC
CTGAACTGCTGGAACAAATACAACGAGTGGGTGCTGTGCCTAAAGAACAA
CGAGAAGGATGAGGCCAAATGCTTTTTACCTCGTTTTAATATGCGTGAGC
TTTGTCCAGGGGAGTGGGTGGAGAAATGGGATGCGGATCGCGACGGAGAC
AAGTTCGCCGGTCTCCAGGTGGACGATGCTGAGCATTAAATGTCGACGCT
TGAGGTCAGCGACCTGCCTGTGCCCGCCAAGGATGAGCGCTTCCCGACCA
TTAACCAGGCCCTGAACTGCTG
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Synonyms
Publications