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Properties
| Property Name | Value |
|---|
| TranscriptId | 593654 |
| Track | FilteredModels2 |
| ProteinId | 593568 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_14 | supercontig | scaffold_14:384470..386243 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6040 ID=mRNA_6040|Name=jgi.p|Nanoce1779_2|593568|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp
GATCAAAATTCGGCAACTGCGCCGCAATTTTATCCACCGTCCGGAAGCCC
ACCCCCTCCATCTCATCCGCTAGTTGATATGGATTCCTCCTCAAAACTTC
CACAGAGCTGTTCCCATACTTCTTATATATCTTCGTTGCCAGCGTAGTAC
TCACATTGTGGCTCTGAAGGAAAAGCATCACCTCAGTCACCTCCTTCTGC
CCCTGCCACGCCTTGATAAACAGCTGCACCCTCTTCGGCCCAATGCCCTC
CACCTCCACCAAACGCTCCGGCGTTTCGTTCAACACTTCCAGCGTCCTCA
CACCAAAATGACTCACGATCTGTCGAGCAGCCACGGGCCCGATGCCCTTC
ACCAACCCCGAAGCCAGGTAATTCTCAATACCCTCCTGCGTGGCCGGCGC
CGTCTCCTTATACTGCACTGCACACAGTTGCTTACCCCACCGGGCGTCAT
GCTTCCAGTCCCCCCGAACCGAGAGACCCATCCCAACGGAAACAGGGCCG
AAATTTCCTACGACCGTAATCACTTCTGAAAGATTCTCGCAGTCAATTTT
CAGGACGCTGAAGCCGGTGGACCCGCTGGCGAAGGTGATTCGTTTGACGA
CCCCCTCGATGGAGACCGAGGAGTGGTTGGCGGTGGTGTTAGTTGAGGGG
GAGAAGGGTGGTGCTTGAACACGTGGTTGTTGTCGTGCGTATTTAAGTGG
GCCTGCTGGTGCTGCTGGTTGGAAGTTGGTGCTGCTGGTCTGATTTAAAC
CTGTCTTATAGTTCTCGAGGTGGCGCTGTGTTGGAGGAGGACGAGGAGAA
GGAGGGGGGGGGTTGACATTTCGCATGGGTTGTTGGGGTGTCAAAGGCAG
TGATGACGGCCACGCGCGAGGCATTTCAATCTCTGTGGCTGACTGTGTTG
AGAGCCACCTTCGTCGCTGCTGCTGCTGCTGCTGCTGTGATGGTGATTGT
TGTCGCTGTGGTTGCTCCGGCTGTGGCTGCTGCGGAACCGGCTGTAGCAT
CTCCACTGCATCTCCTGAATAACCACACCCGTTTGTGTTTGTTATCTGGC
GTTGCTGCACTCGCCCGCCTTTCCCTCCTTTTTCTCCTCCTCTTCCAGCT
CCTCCCACCCGACCTAAAGTCGGTGGATGCAACAATACGTCGTCTTGTGG
TGATGGCGAAGAAGACGTGGAGGATAGCGCTGAAGGAATTGGCGGAGGAA
CAACCAAAGACAGGCGGGCAATACCATTCCATGCCTTCACTCCATCAGCT
CCGCCCCCACCAGCTGCTTTTTCGCCGCCTTGCGAGGTTGCCTCCAATGC
CGTCGCGTGGACATGCGGTTGCCCTCCTCTTCTTTTTCTTCTCCATGGTA
CAATCGAGGAGGTCGGCTTGTTCGGGGAAGGAATAAAGGAAGAGGCGATG
GATGCGGCCCCGGTGCGTGTACCTCGGACGAGGCCGCGAGTAGAAGCCAT
GTGAAAGGTTGCCACCAAAAGCAAGAGAAGGTATTTCCAAAATCTACTTG
TACAACTAAAACTACAGTGACCACCGTTACCAATTCTCCTCTGTCTCTGT
CCCATGCGTTCTGAGTTTTTGTGCCGGGGTTCAGTATGCATTTTGTGTTG
GGTGTTGGTGGTCAGTGCTGTCTGTTTGTAGGCCATTTCGGACAAGAGAG
AGAGCGGAGAGGAGGAGCCTTTCCTGAATTCTTACCGCACAAAAAGACCG
CACGATCCCCTTTCTTAGGCCGCGCAGCAGGCCCTGCGCGTCTTTCGCCC
CGTTTTAGGGCACCTGTGCGGTCA back to topprotein sequence of jgi.p|Nanoce1779_2|593568 >mRNA_6040-protein ID=mRNA_6040-protein|Name=jgi.p|Nanoce1779_2|593568|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MTATREAFQSLWLTVLRATFVAAAAAAAVMVIVVAVVAPAVAAAEPAVAS
PLHLLNNHTRLCLLSGVAALARLSLLFLLLFQLLPPDLKSVDATIRRLVV
MAKKTWRIALKELAEEQPKTGGQYHSMPSLHQLRPHQLLFRRLARLPPMP
SRGHAVALLFFFFSMVQSRRSACSGKE* back to topmRNA from alignment at scaffold_14:384470..386243+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6040 ID=mRNA_6040|Name=jgi.p|Nanoce1779_2|593568|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp|location=Sequence derived from alignment at scaffold_14:384470..386243+ (Nannochloropsis oceanica)
GATCAAAATTCGGCAACTGCGCCGCAATTTTATCCACCGTCCGGAAGCCC
ACCCCCTCCATCTCATCCGCTAGTTGATATGGATTCCTCCTCAAAACTTC
CACAGAGCTGTTCCCATACTTCTTATATATCTTCGTTGCCAGCGTAGTAC
TCACATTGTGGCTCTGAAGGAAAAGCATCACCTCAGTCACCTCCTTCTGC
CCCTGCCACGCCTTGATAAACAGCTGCACCCTCTTCGGCCCAATGCCCTC
CACCTCCACCAAACGCTCCGGCGTTTCGTTCAACACTTCCAGCGTCCTCA
CACCAAAATGACTCACGATCTGTCGAGCAGCCACGGGCCCGATGCCCTTC
ACCAACCCCGAAGCCAGGTAATTCTCAATACCCTCCTGCGTGGCCGGCGC
CGTCTCCTTATACTGCACTGCACACAGTTGCTTACCCCACCGGGCGTCAT
GCTTCCAGTCCCCCCGAACCGAGAGACCCATCCCAACGGAAACAGGGCCG
AAATTTCCTACGACCGTAATCACTTCTGAAAGATTCTCGCAGTCAATTTT
CAGGACGCTGAAGCCGGTGGACCCGCTGGCGAAGGTGATTCGTTTGACGA
CCCCCTCGATGGAGACCGAGGAGTGGTTGGCGGTGGTGTTAGTTGAGGGG
GAGAAGGGTGGTGCTTGAACACGTGGTTGTTGTCGTGCGTATTTAAGTGG
GCCTGCTGGTGCTGCTGGTTGGAAGTTGGTGCTGCTGGTCTGATTTAAAC
CTGTCTTATAGTTCTCGAGGTGGCGCTGTGTTGGAGGAGGACGAGGAGAA
GGAGGGGGGGGGTTGACATTTCGCATGGGTTGTTGGGGTGTCAAAGGCAG
TGATGACGGCCACGCGCGAGGCATTTCAATCTCTGTGGCTGACTGTGTTG
AGAGCCACCTTCGTCGCTGCTGCTGCTGCTGCTGCTGTGATGGTGATTGT
TGTCGCTGTGGTTGCTCCGGCTGTGGCTGCTGCGGAACCGGCTGTAGCAT
CTCCACTGCATCTCCTGAATAACCACACCCGTTTGTGTTTGTTATCTGGC
GTTGCTGCACTCGCCCGCCTTTCCCTCCTTTTTCTCCTCCTCTTCCAGCT
CCTCCCACCCGACCTAAAGTCGGTGGATGCAACAATACGTCGTCTTGTGG
TGATGGCGAAGAAGACGTGGAGGATAGCGCTGAAGGAATTGGCGGAGGAA
CAACCAAAGACAGGCGGGCAATACCATTCCATGCCTTCACTCCATCAGCT
CCGCCCCCACCAGCTGCTTTTTCGCCGCCTTGCGAGGTTGCCTCCAATGC
CGTCGCGTGGACATGCGGTTGCCCTCCTCTTCTTTTTCTTCTCCATGGTA
CAATCGAGGAGGTCGGCTTGTTCGGGGAAGGAATAAAGGAAGAGGCGATG
GATGCGGCCCCGGTGCGTGTACCTCGGACGAGGCCGCGAGTAGAAGCCAT
GTGAAAGGTTGCCACCAAAAGCAAGAGAAGGTATTTCCAAAATCTACTTG
TACAACTAAAACTACAGTGACCACCGTTACCAATTCTCCTCTGTCTCTGT
CCCATGCGTTCTGAGTTTTTGTGCCGGGGTTCAGTATGCATTTTGTGTTG
GGTGTTGGTGGTCAGTGCTGTCTGTTTGTAGGCCATTTCGGACAAGAGAG
AGAGCGGAGAGGAGGAGCCTTTCCTGAATTCTTACCGCACAAAAAGACCG
CACGATCCCCTTTCTTAGGCCGCGCAGCAGGCCCTGCGCGTCTTTCGCCC
CGTTTTAGGGCACCTGTGCGGTCA back to topCoding sequence (CDS) from alignment at scaffold_14:384470..386243+ >mRNA_6040 ID=mRNA_6040|Name=jgi.p|Nanoce1779_2|593568|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at scaffold_14:384470..386243+ (Nannochloropsis oceanica)
ATGACGGCCACGCGCGAGGCATTTCAATCTCTGTGGCTGACTGTGTTGAG
AGCCACCTTCGTCGCTGCTGCTGCTGCTGCTGCTGTGATGGTGATTGTTG
TCGCTGTGGTTGCTCCGGCTGTGGCTGCTGCGGAACCGGCTGTAGCATCT
CCACTGCATCTCCTGAATAACCACACCCGTTTGTGTTTGTTATCTGGCGT
TGCTGCACTCGCCCGCCTTTCCCTCCTTTTTCTCCTCCTCTTCCAGCTCC
TCCCACCCGACCTAAAGTCGGTGGATGCAACAATACGTCGTCTTGTGGTG
ATGGCGAAGAAGACGTGGAGGATAGCGCTGAAGGAATTGGCGGAGGAACA
ACCAAAGACAGGCGGGCAATACCATTCCATGCCTTCACTCCATCAGCTCC
GCCCCCACCAGCTGCTTTTTCGCCGCCTTGCGAGGTTGCCTCCAATGCCG
TCGCGTGGACATGCGGTTGCCCTCCTCTTCTTTTTCTTCTCCATGGTACA
ATCGAGGAGGTCGGCTTGTTCGGGGAAGGAATAA back to top
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