jgi.p|Nanoce1779_2|537780, mRNA_604 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|537780
Unique Name	mRNA_604
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1227
Alignment location	scaffold_3:1511809..1513330 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	537866
Track	FilteredModels2
ProteinId	537780

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1511809..1513330 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537780	gene_604	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|537780	mRNA_604-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_604	CDS_604	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1511809..1513330+
coding sequence from alignment at scaffold_3:1511809..1513330+

mRNA sequence

>mRNA_604 ID=mRNA_604|Name=jgi.p|Nanoce1779_2|537780|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
CTCCATGCAAAGCCTGTCCTTGTGCCATCGATTTTCGTCTCACTCACACA
CCACCACACCCCGCATATGTAGACTTTTTTTTACCCTGGTACGCAGACGC
ACCGCGCACGGTCAGCCCAAGACTCTCTGGCCGGGCAACCTCCTCCCTCC
AGTCGCCATCCTCCTCCTGCAACAAAAGAGCAAACACACACAAGGCATGT
ACAACTGCTATACTCCTCGCATTGCCACGCGCCCACTGCCATCGCCATCG
TCACAAGCGACAAGCAGCAGCAATGAGGGGAGAAGAAGAAAAACTGCCAC
TGCATCTACAACAAGCGGCGGGGAGAAATATAAGCCATCACGTGTGGACG
ACCGGGCATGGAACCAACTTCGGCCTCTGTTCATTGATCTTGGTGTCGTC
TCACAGGCTTCAGGCTCCGCCTACCTGGAGCTCGAGCACACCAAGGTCCT
TGTAGCTGTGTACGGGCCTAAGCCCCGGCAGGACGTAGAATTCAGTGAAG
ATGGGAAACTGCTCTGTGATTTCCGATATGCGCCTTTCGCCCGCCGGGGT
GGGAGGCTCCGGCAGAGAAAGGAGAGGGGAGGGCGGGAAGGAGGAGGTGG
GGGCGGACCACAAGAGGAAGAGCGAGCGGCGTCACAACTCATAGCCCAGG
CCTTGGAAGCGTCGGTGCAGCTGGCGAAGCTACCGAAGAGCGTTATTGAG
ATTTACGTGTCGGTGCTGCAGGCGGATGGAGGAGAGGTAGGGGCGGCCAT
CACGTGTGCCTCCTTGGCATTGGCGGACGCGGGGATCGAACTGTTCGGGC
TGGTGGCGTCGAGCGTAGTGGGAGGGTGGAATGTGCATTTGGATCCAACG
GCCACAGAGGAGGAGGGAGATGGCGTGAGGGAGGGCGAGGGAGGGGTATT
GGGGTTGGCGCTGATGCCGACCTCTGGGGAGGTGACGCAGCTTTGGCAGA
GTGGGCGGTTGGACGGGACGGCCATGGAGAGGGCACTAGAGATAGCCACG
GATGGGGCCTTGATGGTGCACGCCATGATGCGGAAGAGGCTGTTGAAGTA
TATGGGAGACCAGGAGGGGGGAGGGGGGTCCTCGTCCTCGACATCCTTGT
TCTTGTCTTCCTCGTAGGGAGGGAAGGGCCAGAAGAGAAAGTAGTGGGAA
AGTGGTTGCAAAACATCAAAGCAATATGGAAAAGGAAAAAGAAGGCTATC
AGAAACATGCGACTTAGAAGGGGGGCC

protein sequence of jgi.p|Nanoce1779_2|537780

>mRNA_604-protein ID=mRNA_604-protein|Name=jgi.p|Nanoce1779_2|537780|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MQSLSLCHRFSSHSHTTTPRICRLFFTLVRRRTAHGQPKTLWPGNLLPPV
AILLLQQKSKHTQGMYNCYTPRIATRPLPSPSSQATSSSNEGRRRKTATA
STTSGGEKYKPSRVDDRAWNQLRPLFIDLGVVSQASGSAYLELEHTKVLV
AVYGPKPRQDVEFSEDGKLLCDFRYAPFARRGGRLRQRKERGGREGGGGG
GPQEEERAASQLIAQALEASVQLAKLPKSVIEIYVSVLQADGGEVGAAIT
CASLALADAGIELFGLVASSVVGGWNVHLDPTATEEEGDGVREGEGGVLG
LALMPTSGEVTQLWQSGRLDGTAMERALEIATDGALMVHAMMRKRLLKYM
GDQEGGGGSSSSTSLFLSSS*

mRNA from alignment at scaffold_3:1511809..1513330+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_604 ID=mRNA_604|Name=jgi.p|Nanoce1779_2|537780|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp|location=Sequence derived from alignment at scaffold_3:1511809..1513330+ (Nannochloropsis oceanica)
CTCCATGCAAAGCCTGTCCTTGTGCCATCGATTTTCGTCTCACTCACACA
CCACCACACCCCGCATATGTAGACTTTTTTTTACCCTGGTACGCAGACGC
ACCGCGCACGGTCAGCCCAAGACTCTCTGGCCGGGCAACCTCCTCCCTCC
AGTCGCCATCCTCCTCCTGCAACAAAAGAGCAAACACACACAAGGCATGT
ACAACTGCTATACTCCTCGCATTGCCACGCGCCCACTGCCATCGCCATCG
TCACAAGCGACAAGCAGCAGCAATGAGGGGAGAAGAAGAAAAACTGCCAC
TGCATCTACAACAAGCGGCGGGGAGGTGAGTGTCATAGGAGTGGTAGCTT
GCTGATAAGTTGACATTGCGAGGGTTATTACTGGTCGACCTACGCGCTCT
TTCTCACTCTGCCACTCTTAGAAATATAAGCCATCACGTGTGGACGACCG
GGCATGGAACCAACTTCGGCCTCTGTTCATTGATCTTGGTGTCGTCTCAC
AGGTATGCATGTAGACCTTTCCCAGCCCTCTCTTTCCTTCCTCTTTTCTT
CGGCTACAATGTTCTTCCCTCCATCGGTTCCCTACCACACGATACCCTTG
CTTGTCCTCGATTACTCTCGCCCATTCTCCTTCCCCCATTCCACTCTGCT
CCCTCTTTTCAGGCTTCAGGCTCCGCCTACCTGGAGCTCGAGCACACCAA
GGTCCTTGTAGCTGTGTACGGGCCTAAGCCCCGGCAGGACGTAGAATTCA
GTGAAGATGGGAAACTGCTCTGTGATTTCCGATATGCGCCTTTCGCCCGC
CGGGGTGGGAGGCTCCGGCAGAGAAAGGAGAGGGGAGGGCGGGAAGGAGG
AGGTGGGGGCGGACCACAAGAGGAAGAGCGAGCGGCGTCACAACTCATAG
CCCAGGCCTTGGAAGCGTCGGTGCAGCTGGCGAAGCTACCGAAGAGCGTT
ATTGAGATTTACGTGTCGGTGCTGCAGGCGGATGGAGGAGAGGTAGGGGC
GGCCATCACGTGTGCCTCCTTGGCATTGGCGGACGCGGGGATCGAACTGT
TCGGGCTGGTGGCGTCGAGCGTAGTGGTCGCTACTACCACAGCTTCTCTA
CCTGGAGATAAAAAGGGAGGGTGGAATGTGCATTTGGATCCAACGGCCAC
AGAGGAGGAGGGAGATGGCGTGAGGGAGGGCGAGGGAGGGGTATTGGGGT
TGGCGCTGATGCCGACCTCTGGGGAGGTGACGCAGCTTTGGCAGAGTGGG
CGGTTGGACGGGACGGCCATGGAGAGGGCACTAGAGATAGCCACGGATGG
GGCCTTGATGGTGCACGCCATGATGCGGAAGAGGCTGTTGAAGTATATGG
GAGACCAGGAGGGGGGAGGGGGGTCCTCGTCCTCGACATCCTTGTTCTTG
TCTTCCTCGTAGGGAGGGAAGGGCCAGAAGAGAAAGTAGTGGGAAAGTGG
TTGCAAAACATCAAAGCAATATGGAAAAGGAAAAAGAAGGCTATCAGAAA
CATGCGACTTAGAAGGGGGGCC

Coding sequence (CDS) from alignment at scaffold_3:1511809..1513330+

>mRNA_604 ID=mRNA_604|Name=jgi.p|Nanoce1779_2|537780|organism=Nannochloropsis oceanica|type=CDS|length=4452bp|location=Sequence derived from alignment at scaffold_3:1511809..1513330+ (Nannochloropsis oceanica)
ATGCAAAGCCTGTCCTTGTGCCATCGATTTTCGTCTCACTCACACACCAC
CACACCCCGCATATGTAGACTTTTTTTTACCCTGGTACGCAGACGCACCG
CGCACGGTCAGCCCAAGACTCTCTGGCCGGGCAACCTCCTCCCTCCAGTC
GCCATCCTCCTCCTGCAACAAAAGAGCAAACACACACAAGGCATGTACAA
CTGCTATACTCCTCGCATTGCCACGCGCCCACTGCCATCGCCATCGTCAC
AAGCGACAAGCAGCAGCAATGAGGGGAGAAGAAGAAAAACTGCCACTGCA
TCTACAACAAGCGGCGGGGAGAAATATAAGCCATCACGTGTGGACGACCG
GGCATGGAACCAACTTCGGCCTCTGTTCATTGATCTTGGTGTCGTCTCAC
AGGCTTCAGGCTCCGCCTACCTGGAGCTCGAGCACACCAAGGTCCTTGTA
GCTGTGTACGGGCCTAAGCCCCGGCAGGACGTAGAATTCAGTGAAGATGG
GAAACTGCTCTGTGATTTCCGATATGCGCCTTTCGCCCGCCGGGGTGGGA
GGCTCCGGCAGAGAAAGGAGAGGGGAGGGCGGGAAGGAGGAGGTGGGGGC
GGACCACAAGAGGAAGAGCGAGCGGCGTCACAACTCATAGCCCAGGCCTT
GGAAGCGTCGGTGCAGCTGGCGAAGCTACCGAAGAGCGTTATTGAGATTT
ACGTGTCGGTGCTGCAGGCGGATGGAGGAGAGGTAGGGGCGGCCATCACG
TGTGCCTCCTTGGCATTGGCGGACGCGGGGATCGAACTGTTCGGGCTGGT
GGCGTCGAGCGTAGTGGGAGGGTGGAATGTGCATTTGGATCCAACGGCCA
CAGAGGAGGAGGGAGATGGCGTGAGGGAGGGCGAGGGAGGGGTATTGGGG
TTGGCGCTGATGCCGACCTCTGGGGAGGTGACGCAGCTTTGGCAGAGTGG
GCGGTTGGACGGGACGGCCATGGAGAGGGCACTAGAGATAGCCACGGATG
GGGCCTTGATGGTGCACGCCATGATGCGGAAGAGGCTGTTGAAGTATATG
GGAGACCAGGAGGGGGGAGGGGGGTCCTCGTCCTCGACATCCTTGTTCTT
GTCTTCCTCGTAGATGCAAAGCCTGTCCTTGTGCCATCGATTTTCGTCTC
ACTCACACACCACCACACCCCGCATATGTAGACTTTTTTTTACCCTGGTA
CGCAGACGCACCGCGCACGGTCAGCCCAAGACTCTCTGGCCGGGCAACCT
CCTCCCTCCAGTCGCCATCCTCCTCCTGCAACAAAAGAGCAAACACACAC
AAGGCATGTACAACTGCTATACTCCTCGCATTGCCACGCGCCCACTGCCA
TCGCCATCGTCACAAGCGACAAGCAGCAGCAATGAGGGGAGAAGAAGAAA
AACTGCCACTGCATCTACAACAAGCGGCGGGGAGAAATATAAGCCATCAC
GTGTGGACGACCGGGCATGGAACCAACTTCGGCCTCTGTTCATTGATCTT
GGTGTCGTCTCACAGGCTTCAGGCTCCGCCTACCTGGAGCTCGAGCACAC
CAAGGTCCTTGTAGCTGTGTACGGGCCTAAGCCCCGGCAGGACGTAGAAT
TCAGTGAAGATGGGAAACTGCTCTGTGATTTCCGATATGCGCCTTTCGCC
CGCCGGGGTGGGAGGCTCCGGCAGAGAAAGGAGAGGGGAGGGCGGGAAGG
AGGAGGTGGGGGCGGACCACAAGAGGAAGAGCGAGCGGCGTCACAACTCA
TAGCCCAGGCCTTGGAAGCGTCGGTGCAGCTGGCGAAGCTACCGAAGAGC
GTTATTGAGATTTACGTGTCGGTGCTGCAGGCGGATGGAGGAGAGGTAGG
GGCGGCCATCACGTGTGCCTCCTTGGCATTGGCGGACGCGGGGATCGAAC
TGTTCGGGCTGGTGGCGTCGAGCGTAGTGGGAGGGTGGAATGTGCATTTG
GATCCAACGGCCACAGAGGAGGAGGGAGATGGCGTGAGGGAGGGCGAGGG
AGGGGTATTGGGGTTGGCGCTGATGCCGACCTCTGGGGAGGTGACGCAGC
TTTGGCAGAGTGGGCGGTTGGACGGGACGGCCATGGAGAGGGCACTAGAG
ATAGCCACGGATGGGGCCTTGATGGTGCACGCCATGATGCGGAAGAGGCT
GTTGAAGTATATGGGAGACCAGGAGGGGGGAGGGGGGTCCTCGTCCTCGA
CATCCTTGTTCTTGTCTTCCTCGTAGATGCAAAGCCTGTCCTTGTGCCAT
CGATTTTCGTCTCACTCACACACCACCACACCCCGCATATGTAGACTTTT
TTTTACCCTGGTACGCAGACGCACCGCGCACGGTCAGCCCAAGACTCTCT
GGCCGGGCAACCTCCTCCCTCCAGTCGCCATCCTCCTCCTGCAACAAAAG
AGCAAACACACACAAGGCATGTACAACTGCTATACTCCTCGCATTGCCAC
GCGCCCACTGCCATCGCCATCGTCACAAGCGACAAGCAGCAGCAATGAGG
GGAGAAGAAGAAAAACTGCCACTGCATCTACAACAAGCGGCGGGGAGAAA
TATAAGCCATCACGTGTGGACGACCGGGCATGGAACCAACTTCGGCCTCT
GTTCATTGATCTTGGTGTCGTCTCACAGGCTTCAGGCTCCGCCTACCTGG
AGCTCGAGCACACCAAGGTCCTTGTAGCTGTGTACGGGCCTAAGCCCCGG
CAGGACGTAGAATTCAGTGAAGATGGGAAACTGCTCTGTGATTTCCGATA
TGCGCCTTTCGCCCGCCGGGGTGGGAGGCTCCGGCAGAGAAAGGAGAGGG
GAGGGCGGGAAGGAGGAGGTGGGGGCGGACCACAAGAGGAAGAGCGAGCG
GCGTCACAACTCATAGCCCAGGCCTTGGAAGCGTCGGTGCAGCTGGCGAA
GCTACCGAAGAGCGTTATTGAGATTTACGTGTCGGTGCTGCAGGCGGATG
GAGGAGAGGTAGGGGCGGCCATCACGTGTGCCTCCTTGGCATTGGCGGAC
GCGGGGATCGAACTGTTCGGGCTGGTGGCGTCGAGCGTAGTGGGAGGGTG
GAATGTGCATTTGGATCCAACGGCCACAGAGGAGGAGGGAGATGGCGTGA
GGGAGGGCGAGGGAGGGGTATTGGGGTTGGCGCTGATGCCGACCTCTGGG
GAGGTGACGCAGCTTTGGCAGAGTGGGCGGTTGGACGGGACGGCCATGGA
GAGGGCACTAGAGATAGCCACGGATGGGGCCTTGATGGTGCACGCCATGA
TGCGGAAGAGGCTGTTGAAGTATATGGGAGACCAGGAGGGGGGAGGGGGG
TCCTCGTCCTCGACATCCTTGTTCTTGTCTTCCTCGTAGATGCAAAGCCT
GTCCTTGTGCCATCGATTTTCGTCTCACTCACACACCACCACACCCCGCA
TATGTAGACTTTTTTTTACCCTGGTACGCAGACGCACCGCGCACGGTCAG
CCCAAGACTCTCTGGCCGGGCAACCTCCTCCCTCCAGTCGCCATCCTCCT
CCTGCAACAAAAGAGCAAACACACACAAGGCATGTACAACTGCTATACTC
CTCGCATTGCCACGCGCCCACTGCCATCGCCATCGTCACAAGCGACAAGC
AGCAGCAATGAGGGGAGAAGAAGAAAAACTGCCACTGCATCTACAACAAG
CGGCGGGGAGAAATATAAGCCATCACGTGTGGACGACCGGGCATGGAACC
AACTTCGGCCTCTGTTCATTGATCTTGGTGTCGTCTCACAGGCTTCAGGC
TCCGCCTACCTGGAGCTCGAGCACACCAAGGTCCTTGTAGCTGTGTACGG
GCCTAAGCCCCGGCAGGACGTAGAATTCAGTGAAGATGGGAAACTGCTCT
GTGATTTCCGATATGCGCCTTTCGCCCGCCGGGGTGGGAGGCTCCGGCAG
AGAAAGGAGAGGGGAGGGCGGGAAGGAGGAGGTGGGGGCGGACCACAAGA
GGAAGAGCGAGCGGCGTCACAACTCATAGCCCAGGCCTTGGAAGCGTCGG
TGCAGCTGGCGAAGCTACCGAAGAGCGTTATTGAGATTTACGTGTCGGTG
CTGCAGGCGGATGGAGGAGAGGTAGGGGCGGCCATCACGTGTGCCTCCTT
GGCATTGGCGGACGCGGGGATCGAACTGTTCGGGCTGGTGGCGTCGAGCG
TAGTGGGAGGGTGGAATGTGCATTTGGATCCAACGGCCACAGAGGAGGAG
GGAGATGGCGTGAGGGAGGGCGAGGGAGGGGTATTGGGGTTGGCGCTGAT
GCCGACCTCTGGGGAGGTGACGCAGCTTTGGCAGAGTGGGCGGTTGGACG
GGACGGCCATGGAGAGGGCACTAGAGATAGCCACGGATGGGGCCTTGATG
GTGCACGCCATGATGCGGAAGAGGCTGTTGAAGTATATGGGAGACCAGGA
GGGGGGAGGGGGGTCCTCGTCCTCGACATCCTTGTTCTTGTCTTCCTCGT
AG

Synonyms

Publications