jgi.p|Nanoce1779_2|593563, mRNA_6039 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593563
Unique Name	mRNA_6039
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2760
Alignment location	scaffold_14:379685..382444 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593649
Track	FilteredModels2
ProteinId	593563

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:379685..382444 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593563	gene_6039	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593563	mRNA_6039-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6039	CDS_6039	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:379685..382444+
coding sequence from alignment at scaffold_14:379685..382444+

mRNA sequence

>mRNA_6039 ID=mRNA_6039|Name=jgi.p|Nanoce1779_2|593563|organism=Nannochloropsis oceanica|type=mRNA|length=2760bp
CCTGTCTTTGTTTACGATGCCAAGTGGTGAGTAGTTCAATCGACGCCTGT
CGTTGACTGCTTTTCGTTCTCTTGCTTGACTTTACGTTTTCAGTCTGCCC
GCACCTCCAAGATCATGGTGCACCACATGATATGACATCCCCGGGCCTTA
GAGCATGATGCGTCGACAATCTTCGGGCGAGCCATCACGGCAACTAGAAC
ACTTGTTGGTATGGGAAAAGATCAGGGAGTGGTGCGCTGACTCAAGCCCT
TTTCTTATTTTTCTTGTATGCCCCTTTGGCTATGCGCAGCGCATTCTGCA
TGCACACACCACGTGCCCACACACATAGCAGGCCTTGTCATGCGGCGCCG
GAGTTGTTGACCGGCAGCTTTTTCGACGGCGTGCCTGGCCTCCTCACCCC
ACTCACGGCGCCGACGCTCCGGGGCATACGTGGTTGTGGAGGGGACACCA
GAGTGATGCAGCTCCTTAGAGTGTCGCTGTGTACACTTGTGCTCTTCCAC
ACGCTGTCATTTCACACTCATTCCACTGTCGCGCACGCACACTGAAGGTC
TGAGGCGGTCGTCGCGTCACGCCTGCACCCGCTGAGAATCATAACAGTCA
GGCCCTTCGACACGACCCCATCGATCCTCTGCCCGGCCGATGGGGGCTCG
AACCATGCATTTTGTGGGCGATTGGAACGCGTCCTTTCTGTCCCACCGTG
CTCTTAGGGAGGGTGGGCTGGTGCGTGTGACCTTCACAAATTCGCCGTGG
CCTTGCACGCAGCGACCGAGGAAGAGAACCTTTTTTGGTGCGGGCGCGTG
CCCCACATGGTACGCGCAGCCCTCACACAGCCATCATCATCTTAAGAGAC
ACACACACAGAGACATGCACGTACACACCACCTCTACGTACTTGGCATTC
CGAAGCACACACTTTCCTCTTATATCCCACCCGTATCTGACTCACCCCCC
CCCTCATTTTCTACCCATCACAGACACGCAAACATGGTCTTCCAGCTCGC
CCGAGACTCTGTCTCGGCCCTGGTCTATCATTTCAAAGAAGGAAACCTTA
ACTGGCCTATGATTATCTACCTCGTCCTTGTCCACTTGGCGGGCTACATC
GGTCTGACTACCATTCTGGCTTGCAAATGGCAAACTCTCCTCGAAGCGTT
CATCCTATGGCCCATCACCGGGCTGGGGATTACTGCCGGCGTACACCGAC
TTTGGGCACACCGTTCGTACAATGCCACGTTGCCTTATCGCATTCTGTTG
ATGTTGTTCAACTCAATTGCGAACCAAGGCAGCATCTACCACTGGTCCCG
GGACCACCGCGTGCACCACAAGTACTCCGAGACTGATGCTGACCCACATA
ACGCCACCCGTGGCTTCTTCTTCGCGCACATGGGCTGGCTCATTGTTAAG
AAGCACCCCAAGGTCGTCGAAGGGGGGAAGCAACTCGATTTCTCCGATTT
GGCTGCCGATCCCGTGGTGCGATTCCAGCGTGATTGGGATCCGTGGTTCG
CCCAGTTTATGTGCTTTGTCATGCCGGCGCTTGTTGCATCGAGGTTCTGG
GGTGAGGCGTTCTGGAACGCCTTTTGGGTGGCGGGGGCTTTGAGGTATAT
GTTGGTGCTGCACTTCACCTGGATGGTTAACAGTGCGGCGCACTTGTATG
GCGACCACCCGTACGACCCTACCATGTGGCCGGCGGAGAACCCGTTGGTA
TCGGTAGTGGCGATCGGAGAAGGCTGGCATAACTGGCACCATCGTTACCC
CTACGACTACGCGGCTTCCGAGTTTGGGATTTCGCAGCAGTTCAACCCGA
CCAAGGCGTTCATTGATTTTTTTGCGGCCATAGGGATGGTGACGAACCGA
AAACGTGCGACGGGGGCTTGGGCAAAGCTCAAGGAATCCAGGGCAAGGGA
TGCGGCGAATGGGAAGAGCATGAAAGATTTCAAGGGAAGAGGCTCGGGGT
CAGACTATGGTACGACAAACACCAATTACGCGGTGTCGAACAAGACAGTG
GTGACCGACAAGGGGGCGCAACAACCAGGGTGGGAGGAGAGCAATCACCC
CAAGTACAACTAATTTGGAAGAGAGTTTGCTGTTTGTAAGAGAAAAGGGA
AAGGGGAAAACTAATCGTCAGGAGGTATGATATGGATATAAAGAGTGCGC
CGTGGAAAGAAAACTAGAGTTGTTTCATTCCTTTGATTCCATTTAAGCAA
GCAACAGCAACGCCAACAGCAACCGCATTTAGAAAAAGATAGAGGGAACA
GTCTGAGTAGAGAGAATACAAGTAGAGCGGAAGTGATAGAGTGAGGCAAG
AGGGAAGTATCTGCGGGGCAGGAGATGGGGGACAGATTGCGCATCATAAA
AGGAGTAGAAATGCCATTGGTTAGCGTCGCTTTCCTCTGCCCTCTCTGTC
CTCAAATTCCTATGCACCCACACTTCTCGGTCCCGTGTTCCACGCATGCC
TTCCCCCGTGTCTCCCTCTCCGCCTTACCCTCTCCCCCATCTTTATCCAT
TATTAGAAATAGTTGTGTCGAGTCGATCGGATCGCAGAAGTATGTGTACA
GAGTGAGGGGGGAGGGAGAAGAAGACGACGGAAGTTAAGAGGACGGACAT
GATGACGGAGTAGAAAAAGAAACGCAAGCACACCAGCAGCGGTAGAAACT
TTTAAAAAAAGACCAAGGACTGGAAATCTGTAATCTTGGCGAAGACAAAA
AAATCCACCTACTTAATCTCTGAATCAAGAAAATAAAACACTCACTCCCC
TCGGTTTTAA

protein sequence of jgi.p|Nanoce1779_2|593563

>mRNA_6039-protein ID=mRNA_6039-protein|Name=jgi.p|Nanoce1779_2|593563|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MVFQLARDSVSALVYHFKEGNLNWPMIIYLVLVHLAGYIGLTTILACKWQ
TLLEAFILWPITGLGITAGVHRLWAHRSYNATLPYRILLMLFNSIANQGS
IYHWSRDHRVHHKYSETDADPHNATRGFFFAHMGWLIVKKHPKVVEGGKQ
LDFSDLAADPVVRFQRDWDPWFAQFMCFVMPALVASRFWGEAFWNAFWVA
GALRYMLVLHFTWMVNSAAHLYGDHPYDPTMWPAENPLVSVVAIGEGWHN
WHHRYPYDYAASEFGISQQFNPTKAFIDFFAAIGMVTNRKRATGAWAKLK
ESRARDAANGKSMKDFKGRGSGSDYGTTNTNYAVSNKTVVTDKGAQQPGW
EESNHPKYN*

mRNA from alignment at scaffold_14:379685..382444+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6039 ID=mRNA_6039|Name=jgi.p|Nanoce1779_2|593563|organism=Nannochloropsis oceanica|type=mRNA|length=2760bp|location=Sequence derived from alignment at scaffold_14:379685..382444+ (Nannochloropsis oceanica)
CCTGTCTTTGTTTACGATGCCAAGTGGTGAGTAGTTCAATCGACGCCTGT
CGTTGACTGCTTTTCGTTCTCTTGCTTGACTTTACGTTTTCAGTCTGCCC
GCACCTCCAAGATCATGGTGCACCACATGATATGACATCCCCGGGCCTTA
GAGCATGATGCGTCGACAATCTTCGGGCGAGCCATCACGGCAACTAGAAC
ACTTGTTGGTATGGGAAAAGATCAGGGAGTGGTGCGCTGACTCAAGCCCT
TTTCTTATTTTTCTTGTATGCCCCTTTGGCTATGCGCAGCGCATTCTGCA
TGCACACACCACGTGCCCACACACATAGCAGGCCTTGTCATGCGGCGCCG
GAGTTGTTGACCGGCAGCTTTTTCGACGGCGTGCCTGGCCTCCTCACCCC
ACTCACGGCGCCGACGCTCCGGGGCATACGTGGTTGTGGAGGGGACACCA
GAGTGATGCAGCTCCTTAGAGTGTCGCTGTGTACACTTGTGCTCTTCCAC
ACGCTGTCATTTCACACTCATTCCACTGTCGCGCACGCACACTGAAGGTC
TGAGGCGGTCGTCGCGTCACGCCTGCACCCGCTGAGAATCATAACAGTCA
GGCCCTTCGACACGACCCCATCGATCCTCTGCCCGGCCGATGGGGGCTCG
AACCATGCATTTTGTGGGCGATTGGAACGCGTCCTTTCTGTCCCACCGTG
CTCTTAGGGAGGGTGGGCTGGTGCGTGTGACCTTCACAAATTCGCCGTGG
CCTTGCACGCAGCGACCGAGGAAGAGAACCTTTTTTGGTGCGGGCGCGTG
CCCCACATGGTACGCGCAGCCCTCACACAGCCATCATCATCTTAAGAGAC
ACACACACAGAGACATGCACGTACACACCACCTCTACGTACTTGGCATTC
CGAAGCACACACTTTCCTCTTATATCCCACCCGTATCTGACTCACCCCCC
CCCTCATTTTCTACCCATCACAGACACGCAAACATGGTCTTCCAGCTCGC
CCGAGACTCTGTCTCGGCCCTGGTCTATCATTTCAAAGAAGGAAACCTTA
ACTGGCCTATGATTATCTACCTCGTCCTTGTCCACTTGGCGGGCTACATC
GGTCTGACTACCATTCTGGCTTGCAAATGGCAAACTCTCCTCGAAGCGTT
CATCCTATGGCCCATCACCGGGCTGGGGATTACTGCCGGCGTACACCGAC
TTTGGGCACACCGTTCGTACAATGCCACGTTGCCTTATCGCATTCTGTTG
ATGTTGTTCAACTCAATTGCGAACCAAGGCAGCATCTACCACTGGTCCCG
GGACCACCGCGTGCACCACAAGTACTCCGAGACTGATGCTGACCCACATA
ACGCCACCCGTGGCTTCTTCTTCGCGCACATGGGCTGGCTCATTGTTAAG
AAGCACCCCAAGGTCGTCGAAGGGGGGAAGCAACTCGATTTCTCCGATTT
GGCTGCCGATCCCGTGGTGCGATTCCAGCGTGATTGGGATCCGTGGTTCG
CCCAGTTTATGTGCTTTGTCATGCCGGCGCTTGTTGCATCGAGGTTCTGG
GGTGAGGCGTTCTGGAACGCCTTTTGGGTGGCGGGGGCTTTGAGGTATAT
GTTGGTGCTGCACTTCACCTGGATGGTTAACAGTGCGGCGCACTTGTATG
GCGACCACCCGTACGACCCTACCATGTGGCCGGCGGAGAACCCGTTGGTA
TCGGTAGTGGCGATCGGAGAAGGCTGGCATAACTGGCACCATCGTTACCC
CTACGACTACGCGGCTTCCGAGTTTGGGATTTCGCAGCAGTTCAACCCGA
CCAAGGCGTTCATTGATTTTTTTGCGGCCATAGGGATGGTGACGAACCGA
AAACGTGCGACGGGGGCTTGGGCAAAGCTCAAGGAATCCAGGGCAAGGGA
TGCGGCGAATGGGAAGAGCATGAAAGATTTCAAGGGAAGAGGCTCGGGGT
CAGACTATGGTACGACAAACACCAATTACGCGGTGTCGAACAAGACAGTG
GTGACCGACAAGGGGGCGCAACAACCAGGGTGGGAGGAGAGCAATCACCC
CAAGTACAACTAATTTGGAAGAGAGTTTGCTGTTTGTAAGAGAAAAGGGA
AAGGGGAAAACTAATCGTCAGGAGGTATGATATGGATATAAAGAGTGCGC
CGTGGAAAGAAAACTAGAGTTGTTTCATTCCTTTGATTCCATTTAAGCAA
GCAACAGCAACGCCAACAGCAACCGCATTTAGAAAAAGATAGAGGGAACA
GTCTGAGTAGAGAGAATACAAGTAGAGCGGAAGTGATAGAGTGAGGCAAG
AGGGAAGTATCTGCGGGGCAGGAGATGGGGGACAGATTGCGCATCATAAA
AGGAGTAGAAATGCCATTGGTTAGCGTCGCTTTCCTCTGCCCTCTCTGTC
CTCAAATTCCTATGCACCCACACTTCTCGGTCCCGTGTTCCACGCATGCC
TTCCCCCGTGTCTCCCTCTCCGCCTTACCCTCTCCCCCATCTTTATCCAT
TATTAGAAATAGTTGTGTCGAGTCGATCGGATCGCAGAAGTATGTGTACA
GAGTGAGGGGGGAGGGAGAAGAAGACGACGGAAGTTAAGAGGACGGACAT
GATGACGGAGTAGAAAAAGAAACGCAAGCACACCAGCAGCGGTAGAAACT
TTTAAAAAAAGACCAAGGACTGGAAATCTGTAATCTTGGCGAAGACAAAA
AAATCCACCTACTTAATCTCTGAATCAAGAAAATAAAACACTCACTCCCC
TCGGTTTTAA

Coding sequence (CDS) from alignment at scaffold_14:379685..382444+

>mRNA_6039 ID=mRNA_6039|Name=jgi.p|Nanoce1779_2|593563|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_14:379685..382444+ (Nannochloropsis oceanica)
ATGGTCTTCCAGCTCGCCCGAGACTCTGTCTCGGCCCTGGTCTATCATTT
CAAAGAAGGAAACCTTAACTGGCCTATGATTATCTACCTCGTCCTTGTCC
ACTTGGCGGGCTACATCGGTCTGACTACCATTCTGGCTTGCAAATGGCAA
ACTCTCCTCGAAGCGTTCATCCTATGGCCCATCACCGGGCTGGGGATTAC
TGCCGGCGTACACCGACTTTGGGCACACCGTTCGTACAATGCCACGTTGC
CTTATCGCATTCTGTTGATGTTGTTCAACTCAATTGCGAACCAAGGCAGC
ATCTACCACTGGTCCCGGGACCACCGCGTGCACCACAAGTACTCCGAGAC
TGATGCTGACCCACATAACGCCACCCGTGGCTTCTTCTTCGCGCACATGG
GCTGGCTCATTGTTAAGAAGCACCCCAAGGTCGTCGAAGGGGGGAAGCAA
CTCGATTTCTCCGATTTGGCTGCCGATCCCGTGGTGCGATTCCAGCGTGA
TTGGGATCCGTGGTTCGCCCAGTTTATGTGCTTTGTCATGCCGGCGCTTG
TTGCATCGAGGTTCTGGGGTGAGGCGTTCTGGAACGCCTTTTGGGTGGCG
GGGGCTTTGAGGTATATGTTGGTGCTGCACTTCACCTGGATGGTTAACAG
TGCGGCGCACTTGTATGGCGACCACCCGTACGACCCTACCATGTGGCCGG
CGGAGAACCCGTTGGTATCGGTAGTGGCGATCGGAGAAGGCTGGCATAAC
TGGCACCATCGTTACCCCTACGACTACGCGGCTTCCGAGTTTGGGATTTC
GCAGCAGTTCAACCCGACCAAGGCGTTCATTGATTTTTTTGCGGCCATAG
GGATGGTGACGAACCGAAAACGTGCGACGGGGGCTTGGGCAAAGCTCAAG
GAATCCAGGGCAAGGGATGCGGCGAATGGGAAGAGCATGAAAGATTTCAA
GGGAAGAGGCTCGGGGTCAGACTATGGTACGACAAACACCAATTACGCGG
TGTCGAACAAGACAGTGGTGACCGACAAGGGGGCGCAACAACCAGGGTGG
GAGGAGAGCAATCACCCCAAGTACAACTAA

Synonyms

Publications