jgi.p|Nanoce1779_2|593552, mRNA_6036 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593552
Unique Name	mRNA_6036
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1821
Alignment location	scaffold_14:372171..373991 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	593638
Track	FilteredModels2
ProteinId	593552

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:372171..373991 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593552	gene_6036	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593552	mRNA_6036-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6036	CDS_6036	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:372171..373991-
coding sequence from alignment at scaffold_14:372171..373991-

mRNA sequence

>mRNA_6036 ID=mRNA_6036|Name=jgi.p|Nanoce1779_2|593552|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
AGCCTTTACAAAGCACCTCAATACATCAACGATGCTGCGGCGACTCTTCC
TGCGCTCGTCCACCTCTCTCTCTCGCACCATCGCCACCATCACGCCCGGC
TTGTCCCGTGCCCTTGCCACTCTTTCTGTTGGCGCGCCCGACCTCCCTCG
TGCCTCGAGCACCAACACGAAGCGGCGGTTCGAATGGCAAGACCCCCTGA
TGCTGCGGGCGCAATTGACGGAGGAAGAGGGCATGATCCAAGACATGACC
CGCGCCTACTGCAAAGAAAGCCTGCAATCCCGCATCCTCCAAGCGAACCG
CCACGAGGAGTTTGACCGGAAGATCCTGACGGAAATGGGCGAGTTGGGCT
TGCTAGGGCCGACCTTAAAAGGGTACGGATGCCCGGGAGTGGGATATGTG
GCATACGGCCTGATTGCCCATGAGGTGGAAGCGGTGGATAGTGCCTATCG
CTCCGCGATGAGCGTGCAGTCTTCTTTGGTCATGCATCCTATTTATACGT
TCGGCACGGAGAAGCAGAAGGAGACGTATTTGCCGGGGTTGGCAAAGGGG
ACGTTGGTGGGGTGTTTCGGGTTGACGGAGCCGAATCATGGTTCGGACCC
GGGGGGAATGGAGACACGTGCCCGCCGGCAGAAGGACGGGAGTTTCGTGT
TGAGTGGCAGTAAAAACTGGATCACCAACTCACCCATCGCGGACGTGTTT
GTGGTATGGGCGAAGGATGACGAGGGTGCTATCCGGGGGTTCGTCTTGGA
GAAGGGGATGGCCGGGTTAACAGCGCCTAAAATCGAGGGTAAGTTCTCGT
TGCGTGCGTCGGCGACGGGCATGATTGTGATGGACGACGTAAAAGTCCCA
GGGGAGAACTTATTGCCGAAAGCCAAGGGGTTAGGAGGGCCTTTCTCGTG
CTTGAATAGTGCGCGGTACGGCATCTCGTGGGGCACCATGGGGGCGGCTG
GGTTTTGCATGGCTACTGCCCGGGAGTACGTGCTGGACAGGATGCAGTTT
GGGGCGCCTTTGGCAAGCAATCAGCTGATACAAAAGAAACTCGCAGACAT
GGGGACTGAGATTGCGCTTGGTCTCCAGGCGTCGTTGAGGGTAGGGAGGT
TACTGGATCAGAAAGAGGCCGTGCCGGAGATGATCTCGATGGTAAAGAGG
AATAATTGTGGGAAGGCGTTGGAGGTGGTGAGGGTTGCAAGGGATATGTT
GGGAGGGAATGGAATCTCGGACGAATATCATGTGATTCGACATGTGATGA
ATTTGGAGGCGGTTAACACCTATGAAGGGACTCATGATGTGCATGCGTTG
ATACTGGGGAGAGCGATAACGGGCATCCCGGCGTTCGTGCCGCGGAATAG
CACATTTCAGTAAGACAGCAGAGGAAGAGGAAAACATGAGAAAGGAAGGG
AGGGTGTGAGATCGGGAGAGAGAGAGGAGGCATTGAAGATGTAAATATCA
TATAGCATAGGCCCGGGCGGGCAGTTGTGCATTTGTACCGCGTCGGATAG
CTTAGGAAGTTGGCGGAAGGGATGGGGGCAGAGGAGAAGGGTACGAGGAA
AGAAGTGAAAGTTACCAAAATCCGCTGGGCAGGTGTGAGTTGTGTGTAAG
AAAGGAAAGCGGGATGGAAGGGAGAAAGATTGTGAATAGCTATTCCGTGC
TCACAATTTTCTATGAAACATGTGCACTTTGGCGAGTAGAAGAGATGAAA
AATTAAACAAAAGGTAAAGCTGATGTACAACCAAAGGATGAGTATGAATG
CTTACGGTACTTTAATATCTGTCGAGGCCGAGGCCTCCGAGGCCAATTTC
CACTTCCACAAAATGAAACTC

protein sequence of jgi.p|Nanoce1779_2|593552

>mRNA_6036-protein ID=mRNA_6036-protein|Name=jgi.p|Nanoce1779_2|593552|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MLRRLFLRSSTSLSRTIATITPGLSRALATLSVGAPDLPRASSTNTKRRF
EWQDPLMLRAQLTEEEGMIQDMTRAYCKESLQSRILQANRHEEFDRKILT
EMGELGLLGPTLKGYGCPGVGYVAYGLIAHEVEAVDSAYRSAMSVQSSLV
MHPIYTFGTEKQKETYLPGLAKGTLVGCFGLTEPNHGSDPGGMETRARRQ
KDGSFVLSGSKNWITNSPIADVFVVWAKDDEGAIRGFVLEKGMAGLTAPK
IEGKFSLRASATGMIVMDDVKVPGENLLPKAKGLGGPFSCLNSARYGISW
GTMGAAGFCMATAREYVLDRMQFGAPLASNQLIQKKLADMGTEIALGLQA
SLRVGRLLDQKEAVPEMISMVKRNNCGKALEVVRVARDMLGGNGISDEYH
VIRHVMNLEAVNTYEGTHDVHALILGRAITGIPAFVPRNSTFQ*

mRNA from alignment at scaffold_14:372171..373991-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6036 ID=mRNA_6036|Name=jgi.p|Nanoce1779_2|593552|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp|location=Sequence derived from alignment at scaffold_14:372171..373991- (Nannochloropsis oceanica)
AGCCTTTACAAAGCACCTCAATACATCAACGATGCTGCGGCGACTCTTCC
TGCGCTCGTCCACCTCTCTCTCTCGCACCATCGCCACCATCACGCCCGGC
TTGTCCCGTGCCCTTGCCACTCTTTCTGTTGGCGCGCCCGACCTCCCTCG
TGCCTCGAGCACCAACACGAAGCGGCGGTTCGAATGGCAAGACCCCCTGA
TGCTGCGGGCGCAATTGACGGAGGAAGAGGGCATGATCCAAGACATGACC
CGCGCCTACTGCAAAGAAAGCCTGCAATCCCGCATCCTCCAAGCGAACCG
CCACGAGGAGTTTGACCGGAAGATCCTGACGGAAATGGGCGAGTTGGGCT
TGCTAGGGCCGACCTTAAAAGGGTACGGATGCCCGGGAGTGGGATATGTG
GCATACGGCCTGATTGCCCATGAGGTGGAAGCGGTGGATAGTGCCTATCG
CTCCGCGATGAGCGTGCAGTCTTCTTTGGTCATGCATCCTATTTATACGT
TCGGCACGGAGAAGCAGAAGGAGACGTATTTGCCGGGGTTGGCAAAGGGG
ACGTTGGTGGGGTGTTTCGGGTTGACGGAGCCGAATCATGGTTCGGACCC
GGGGGGAATGGAGACACGTGCCCGCCGGCAGAAGGACGGGAGTTTCGTGT
TGAGTGGCAGTAAAAACTGGATCACCAACTCACCCATCGCGGACGTGTTT
GTGGTATGGGCGAAGGATGACGAGGGTGCTATCCGGGGGTTCGTCTTGGA
GAAGGGGATGGCCGGGTTAACAGCGCCTAAAATCGAGGGTAAGTTCTCGT
TGCGTGCGTCGGCGACGGGCATGATTGTGATGGACGACGTAAAAGTCCCA
GGGGAGAACTTATTGCCGAAAGCCAAGGGGTTAGGAGGGCCTTTCTCGTG
CTTGAATAGTGCGCGGTACGGCATCTCGTGGGGCACCATGGGGGCGGCTG
GGTTTTGCATGGCTACTGCCCGGGAGTACGTGCTGGACAGGATGCAGTTT
GGGGCGCCTTTGGCAAGCAATCAGCTGATACAAAAGAAACTCGCAGACAT
GGGGACTGAGATTGCGCTTGGTCTCCAGGCGTCGTTGAGGGTAGGGAGGT
TACTGGATCAGAAAGAGGCCGTGCCGGAGATGATCTCGATGGTAAAGAGG
AATAATTGTGGGAAGGCGTTGGAGGTGGTGAGGGTTGCAAGGGATATGTT
GGGAGGGAATGGAATCTCGGACGAATATCATGTGATTCGACATGTGATGA
ATTTGGAGGCGGTTAACACCTATGAAGGGACTCATGATGTGCATGCGTTG
ATACTGGGGAGAGCGATAACGGGCATCCCGGCGTTCGTGCCGCGGAATAG
CACATTTCAGTAAGACAGCAGAGGAAGAGGAAAACATGAGAAAGGAAGGG
AGGGTGTGAGATCGGGAGAGAGAGAGGAGGCATTGAAGATGTAAATATCA
TATAGCATAGGCCCGGGCGGGCAGTTGTGCATTTGTACCGCGTCGGATAG
CTTAGGAAGTTGGCGGAAGGGATGGGGGCAGAGGAGAAGGGTACGAGGAA
AGAAGTGAAAGTTACCAAAATCCGCTGGGCAGGTGTGAGTTGTGTGTAAG
AAAGGAAAGCGGGATGGAAGGGAGAAAGATTGTGAATAGCTATTCCGTGC
TCACAATTTTCTATGAAACATGTGCACTTTGGCGAGTAGAAGAGATGAAA
AATTAAACAAAAGGTAAAGCTGATGTACAACCAAAGGATGAGTATGAATG
CTTACGGTACTTTAATATCTGTCGAGGCCGAGGCCTCCGAGGCCAATTTC
CACTTCCACAAAATGAAACTC

Coding sequence (CDS) from alignment at scaffold_14:372171..373991-

>mRNA_6036 ID=mRNA_6036|Name=jgi.p|Nanoce1779_2|593552|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_14:372171..373991- (Nannochloropsis oceanica)
ATGCTGCGGCGACTCTTCCTGCGCTCGTCCACCTCTCTCTCTCGCACCAT
CGCCACCATCACGCCCGGCTTGTCCCGTGCCCTTGCCACTCTTTCTGTTG
GCGCGCCCGACCTCCCTCGTGCCTCGAGCACCAACACGAAGCGGCGGTTC
GAATGGCAAGACCCCCTGATGCTGCGGGCGCAATTGACGGAGGAAGAGGG
CATGATCCAAGACATGACCCGCGCCTACTGCAAAGAAAGCCTGCAATCCC
GCATCCTCCAAGCGAACCGCCACGAGGAGTTTGACCGGAAGATCCTGACG
GAAATGGGCGAGTTGGGCTTGCTAGGGCCGACCTTAAAAGGGTACGGATG
CCCGGGAGTGGGATATGTGGCATACGGCCTGATTGCCCATGAGGTGGAAG
CGGTGGATAGTGCCTATCGCTCCGCGATGAGCGTGCAGTCTTCTTTGGTC
ATGCATCCTATTTATACGTTCGGCACGGAGAAGCAGAAGGAGACGTATTT
GCCGGGGTTGGCAAAGGGGACGTTGGTGGGGTGTTTCGGGTTGACGGAGC
CGAATCATGGTTCGGACCCGGGGGGAATGGAGACACGTGCCCGCCGGCAG
AAGGACGGGAGTTTCGTGTTGAGTGGCAGTAAAAACTGGATCACCAACTC
ACCCATCGCGGACGTGTTTGTGGTATGGGCGAAGGATGACGAGGGTGCTA
TCCGGGGGTTCGTCTTGGAGAAGGGGATGGCCGGGTTAACAGCGCCTAAA
ATCGAGGGTAAGTTCTCGTTGCGTGCGTCGGCGACGGGCATGATTGTGAT
GGACGACGTAAAAGTCCCAGGGGAGAACTTATTGCCGAAAGCCAAGGGGT
TAGGAGGGCCTTTCTCGTGCTTGAATAGTGCGCGGTACGGCATCTCGTGG
GGCACCATGGGGGCGGCTGGGTTTTGCATGGCTACTGCCCGGGAGTACGT
GCTGGACAGGATGCAGTTTGGGGCGCCTTTGGCAAGCAATCAGCTGATAC
AAAAGAAACTCGCAGACATGGGGACTGAGATTGCGCTTGGTCTCCAGGCG
TCGTTGAGGGTAGGGAGGTTACTGGATCAGAAAGAGGCCGTGCCGGAGAT
GATCTCGATGGTAAAGAGGAATAATTGTGGGAAGGCGTTGGAGGTGGTGA
GGGTTGCAAGGGATATGTTGGGAGGGAATGGAATCTCGGACGAATATCAT
GTGATTCGACATGTGATGAATTTGGAGGCGGTTAACACCTATGAAGGGAC
TCATGATGTGCATGCGTTGATACTGGGGAGAGCGATAACGGGCATCCCGG
CGTTCGTGCCGCGGAATAGCACATTTCAGTAA

Synonyms

Publications